Wall clock time and date at job start Sun Mar 29 2020 22:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47390 * 2 1 4 4 C 1.36940 * 119.99860 * 265.77491 * 3 2 1 5 5 H 1.07994 * 120.00249 * 146.20982 * 4 3 2 6 6 C 1.38812 * 119.99951 * 326.20473 * 4 3 2 7 7 N 1.31624 * 120.00053 * 337.69181 * 6 4 3 8 8 Si 1.86806 * 120.00075 * 157.69065 * 6 4 3 9 9 H 1.48496 * 109.46898 * 89.99976 * 8 6 4 10 10 H 1.48502 * 109.46863 * 210.00177 * 8 6 4 11 11 H 1.48498 * 109.46813 * 329.99864 * 8 6 4 12 12 C 1.46496 * 120.00273 * 85.77052 * 3 2 1 13 13 C 1.50692 * 109.47145 * 90.00304 * 12 3 2 14 14 C 1.39786 * 125.89953 * 95.00134 * 13 12 3 15 15 C 1.35530 * 107.89861 * 180.02562 * 14 13 12 16 16 N 1.34717 * 107.88379 * 359.87116 * 15 14 13 17 17 N 1.30709 * 125.89580 * 274.97933 * 13 12 3 18 18 C 1.47151 * 111.01023 * 180.22021 * 16 15 14 19 19 C 1.54372 * 105.64072 * 342.82173 * 18 16 15 20 20 C 1.51426 * 141.97551 * 179.73584 * 15 14 13 21 21 H 1.08999 * 109.47486 * 300.00539 * 1 2 3 22 22 H 1.09006 * 109.47026 * 60.00168 * 1 2 3 23 23 H 1.08993 * 109.47137 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47481 * 240.00010 * 2 1 3 25 25 H 1.08998 * 109.47127 * 119.99479 * 2 1 3 26 26 H 0.96997 * 120.00079 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46865 * 330.00018 * 12 3 2 28 28 H 1.08996 * 109.47260 * 210.00388 * 12 3 2 29 29 H 1.08005 * 126.04675 * 0.04866 * 14 13 12 30 30 H 1.09007 * 110.22149 * 101.88820 * 18 16 15 31 31 H 1.09000 * 110.22745 * 223.74994 * 18 16 15 32 32 H 1.09003 * 110.97045 * 143.88729 * 19 18 16 33 33 H 1.09001 * 110.96654 * 267.64706 * 19 18 16 34 34 H 1.09002 * 110.48323 * 315.32656 * 20 15 14 35 35 H 1.08997 * 110.48875 * 77.96825 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3290 1.9976 -1.1827 5 1 2.1599 3.0577 -1.2999 6 6 2.8614 1.2597 -2.2310 7 7 3.4703 0.1180 -1.9896 8 14 2.7136 1.8870 -3.9844 9 1 3.8911 2.7317 -4.3087 10 1 2.6585 0.7345 -4.9194 11 1 1.4738 2.6932 -4.1188 12 6 2.1744 2.1030 1.2652 13 6 3.5637 1.8782 1.8038 14 6 4.6632 2.7199 1.6121 15 6 5.7245 2.1708 2.2516 16 7 5.3124 1.0257 2.8292 17 7 3.9487 0.8627 2.5311 18 6 6.4156 0.3718 3.5507 19 6 7.7086 1.0160 3.0062 20 6 7.1948 2.3976 2.5343 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 3.8420 -0.3978 -2.7222 27 1 1.4420 1.7372 1.9849 28 1 2.0178 3.1685 1.0973 29 1 4.6662 3.6444 1.0537 30 1 6.3258 0.5541 4.6217 31 1 6.4148 -0.6995 3.3499 32 1 8.4529 1.1239 3.7953 33 1 8.1086 0.4416 2.1707 34 1 7.7141 2.7079 1.6275 35 1 7.3217 3.1411 3.3211 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593008392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:04 Heat of formation + Delta-G solvation = 86.200187 kcal Electronic energy + Delta-G solvation = -16808.193557 eV Core-core repulsion = 14229.051839 eV Total energy + Delta-G solvation = -2579.141718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.38719 -38.10594 -36.74721 -33.53712 -32.10657 -31.32561 -30.03532 -28.16157 -26.97610 -25.19751 -22.79630 -22.16806 -20.92361 -20.21650 -18.49226 -17.43567 -16.81118 -16.65635 -15.86645 -15.64265 -14.95337 -14.79620 -14.49081 -14.08742 -13.96437 -13.58661 -13.49912 -13.22736 -12.74045 -12.68542 -12.66401 -12.42618 -12.39205 -12.05289 -11.89062 -11.78758 -11.47185 -11.25279 -10.51326 -9.83609 -9.25801 -8.64556 -7.81539 -5.39395 1.08391 1.46320 1.48489 1.58990 1.67563 2.00577 2.54655 3.25584 3.28620 3.67200 3.81176 3.93273 4.00942 4.22102 4.48109 4.55381 4.57195 4.61100 4.76615 4.82997 4.89428 4.93494 4.99602 4.99996 5.12536 5.16381 5.18227 5.37915 5.49953 5.68005 5.84807 5.97123 6.20192 6.45395 7.07857 7.16253 7.83847 8.38023 9.16759 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.007996 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.789574 B = 3500.957084 C = 4039.536422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.260 4.260 5 H 0.068 0.932 6 C -0.042 4.042 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.284 1.284 10 H -0.294 1.294 11 H -0.267 1.267 12 C 0.215 3.785 13 C 0.068 3.932 14 C -0.278 4.278 15 C 0.047 3.953 16 N -0.413 5.413 17 N -0.325 5.325 18 C 0.117 3.883 19 C -0.115 4.115 20 C -0.059 4.059 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.009 0.991 26 H 0.248 0.752 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 3.404 10.176 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 N -0.302 5.302 4 C -0.390 4.390 5 H 0.085 0.915 6 C -0.239 4.239 7 N -0.565 5.565 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.220 1.220 11 H -0.191 1.191 12 C 0.087 3.913 13 C -0.100 4.100 14 C -0.308 4.308 15 C -0.083 4.083 16 N -0.196 5.196 17 N -0.147 5.147 18 C -0.003 4.003 19 C -0.154 4.154 20 C -0.098 4.098 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.028 0.972 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.291 1.976 10.760 13.147 hybrid contribution 0.139 0.574 -1.531 1.641 sum 7.430 2.550 9.229 12.120 Atomic orbital electron populations 1.22084 0.97473 1.00292 1.00695 1.20841 0.92235 0.85808 0.99711 1.44199 1.73011 1.12136 1.00838 1.19408 1.35140 0.94384 0.90102 0.91461 1.25873 0.96962 0.98244 1.02788 1.70206 1.37864 1.17254 1.31204 0.85372 0.78313 0.77149 0.80184 1.21109 1.22020 1.19117 1.19623 0.86927 0.97377 0.87380 1.23902 1.00282 0.91462 0.94310 1.20700 0.92394 1.05581 1.12127 1.22875 0.97977 0.90147 0.97263 1.50537 1.07257 1.20009 1.41771 1.77156 0.90020 1.23814 1.23749 1.22667 0.82216 0.98403 0.96989 1.22893 0.95166 0.94008 1.03287 1.21077 0.85209 0.99470 1.04024 0.93256 0.93971 0.92489 0.91688 0.97250 0.94336 0.92166 0.90470 0.84587 0.87670 0.90025 0.83802 0.90092 0.88359 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.18 10.24 71.98 0.74 -5.44 16 2 C 0.14 7.28 5.97 86.38 0.52 7.79 16 3 N -0.58 -30.84 2.44 -706.38 -1.72 -32.56 16 4 C -0.26 -14.64 9.49 84.03 0.80 -13.84 16 5 H 0.07 3.67 7.92 -2.91 -0.02 3.65 16 6 C -0.04 -2.41 4.93 84.86 0.42 -1.99 16 7 N -0.92 -56.54 11.32 21.65 0.25 -56.29 16 8 Si 0.96 45.60 29.61 68.60 2.03 47.63 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.22 10.04 6.24 85.63 0.53 10.57 16 13 C 0.07 3.28 6.79 43.10 0.29 3.57 16 14 C -0.28 -12.20 10.74 22.02 0.24 -11.97 16 15 C 0.05 1.72 7.49 41.72 0.31 2.03 16 16 N -0.41 -16.08 4.85 -330.18 -1.60 -17.68 16 17 N -0.32 -15.64 12.70 -47.50 -0.60 -16.24 16 18 C 0.12 2.91 7.77 86.72 0.67 3.58 16 19 C -0.12 -1.97 7.19 31.67 0.23 -1.74 16 20 C -0.06 -1.31 6.86 30.68 0.21 -1.10 16 21 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.07 3.84 5.32 -2.39 -0.01 3.82 16 25 H 0.01 0.49 8.10 -2.39 -0.02 0.47 16 26 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.06 2.61 8.07 -2.39 -0.02 2.59 16 28 H 0.08 3.32 8.04 -2.39 -0.02 3.30 16 29 H 0.14 5.66 8.06 -2.91 -0.02 5.64 16 30 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -75.51 293.06 4.37 -71.14 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.06 Total: 12.54 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 4.96 Total: -8.53 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -3.68 Total: -122.78 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.51 4.37 -71.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593008392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.340 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds