Wall clock time and date at job start Sun Mar 29 2020 22:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 120.00183 * 2 1 4 4 H 1.07994 * 120.00127 * 200.36786 * 3 2 1 5 5 C 1.38814 * 119.99829 * 20.36973 * 3 2 1 6 6 N 1.31615 * 120.00230 * 14.98485 * 5 3 2 7 7 Si 1.86797 * 119.99615 * 194.98253 * 5 3 2 8 8 H 1.48494 * 109.47147 * 85.00553 * 7 5 3 9 9 H 1.48511 * 109.46948 * 205.00417 * 7 5 3 10 10 H 1.48498 * 109.47482 * 324.99814 * 7 5 3 11 11 C 1.46502 * 119.99973 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47063 * 270.00498 * 11 2 1 13 13 C 1.40053 * 125.87708 * 94.99788 * 12 11 2 14 14 C 1.34743 * 107.80098 * 180.02562 * 13 12 11 15 15 N 1.35291 * 107.91291 * 0.05971 * 14 13 12 16 16 N 1.31022 * 125.87051 * 275.02117 * 12 11 2 17 17 C 1.46586 * 124.54680 * 179.88137 * 15 14 13 18 18 C 1.53245 * 108.80244 * 342.73247 * 17 15 14 19 19 C 1.53155 * 109.55687 * 50.56401 * 18 17 15 20 20 C 1.50880 * 127.76546 * 180.08557 * 14 13 12 21 21 H 1.09000 * 109.47190 * 275.10253 * 1 2 3 22 22 H 1.09004 * 109.46742 * 35.09221 * 1 2 3 23 23 H 1.08997 * 109.47633 * 155.09422 * 1 2 3 24 24 H 0.96993 * 120.00297 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.47234 * 150.00196 * 11 2 1 26 26 H 1.08998 * 109.46546 * 30.00307 * 11 2 1 27 27 H 1.08005 * 126.10203 * 359.96969 * 13 12 11 28 28 H 1.08997 * 109.58485 * 102.53021 * 17 15 14 29 29 H 1.08999 * 109.58352 * 222.80312 * 17 15 14 30 30 H 1.09000 * 109.45682 * 290.54142 * 18 17 15 31 31 H 1.08990 * 109.46237 * 170.59006 * 18 17 15 32 32 H 1.08993 * 109.51716 * 170.65428 * 19 18 17 33 33 H 1.09001 * 109.51416 * 50.48271 * 19 18 17 34 34 H 1.08994 * 109.72258 * 44.54201 * 20 14 13 35 35 H 1.09000 * 109.72085 * 283.87739 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3255 5 6 1.5208 2.3505 0.4185 6 7 0.3877 2.2836 1.0847 7 14 2.2827 4.0126 0.0359 8 1 1.8684 4.4461 -1.3226 9 1 1.8226 5.0099 1.0356 10 1 3.7626 3.9033 0.0909 11 6 2.1975 -1.2687 0.0006 12 6 2.4485 -1.7032 1.4216 13 6 1.6528 -2.5858 2.1627 14 6 2.2094 -2.7166 3.3828 15 7 3.3195 -1.9441 3.4188 16 7 3.4486 -1.3198 2.1763 17 6 4.2041 -1.8136 4.5804 18 6 3.4625 -2.3135 5.8247 19 6 2.8684 -3.6974 5.5460 20 6 1.7222 -3.5600 4.5351 21 1 -0.3633 0.0914 1.0236 22 1 -0.3633 0.8409 -0.5908 23 1 -0.3634 -0.9320 -0.4328 24 1 -0.0520 3.0973 1.3768 25 1 3.1499 -1.1387 -0.5133 26 1 1.6084 -2.0285 -0.5130 27 1 0.7530 -3.0738 1.8182 28 1 5.1018 -2.4120 4.4250 29 1 4.4808 -0.7677 4.7132 30 1 2.6611 -1.6179 6.0737 31 1 4.1588 -2.3791 6.6606 32 1 2.4866 -4.1234 6.4737 33 1 3.6399 -4.3489 5.1355 34 1 1.4316 -4.5458 4.1723 35 1 0.8689 -3.0759 5.0102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593008711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:44 Heat of formation + Delta-G solvation = 92.753206 kcal Electronic energy + Delta-G solvation = -16770.066410 eV Core-core repulsion = 14191.208852 eV Total energy + Delta-G solvation = -2578.857558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80242 -36.51617 -35.13078 -32.19242 -31.37707 -29.70888 -27.74880 -26.24233 -25.56902 -23.72154 -21.91204 -21.15895 -19.31915 -18.20302 -16.58878 -16.07439 -15.40016 -14.69421 -14.23420 -14.11982 -13.88297 -13.45773 -13.31596 -13.03341 -12.83889 -12.31090 -11.53937 -11.44426 -11.23649 -11.10380 -10.97818 -10.77530 -10.75191 -10.54955 -10.27381 -9.92353 -9.81812 -9.56771 -8.44522 -8.29646 -7.79370 -6.71255 -5.61956 -3.04308 2.56786 3.11596 3.45722 3.51024 3.53149 3.64845 4.54475 4.62516 4.65931 4.73205 4.92068 5.30330 5.41168 5.43712 5.55364 5.61731 5.73668 5.76530 5.82372 5.85460 5.91345 6.10505 6.18102 6.36368 6.54986 6.74159 6.85540 6.92961 7.45742 7.52029 7.70050 7.83881 7.94202 8.48172 8.65503 9.34036 9.96299 10.44301 11.43351 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031000 B = 0.007058 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.997901 B = 3966.331712 C = 4335.526161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.586 5.586 3 C -0.242 4.242 4 H 0.071 0.929 5 C -0.001 4.001 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.219 3.781 12 C 0.076 3.924 13 C -0.261 4.261 14 C 0.064 3.936 15 N -0.383 5.383 16 N -0.282 5.282 17 C 0.137 3.863 18 C -0.136 4.136 19 C -0.123 4.123 20 C -0.055 4.055 21 H 0.028 0.972 22 H 0.045 0.955 23 H 0.000 1.000 24 H 0.250 0.750 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.135 0.865 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -12.480 8.137 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.308 5.308 3 C -0.372 4.372 4 H 0.089 0.911 5 C -0.199 4.199 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.089 3.911 12 C -0.095 4.095 13 C -0.291 4.291 14 C -0.062 4.062 15 N -0.167 5.167 16 N -0.103 5.103 17 C 0.016 3.984 18 C -0.174 4.174 19 C -0.161 4.161 20 C -0.093 4.093 21 H 0.046 0.954 22 H 0.063 0.937 23 H 0.019 0.981 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.153 0.847 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.402 -11.577 8.365 14.946 hybrid contribution -0.435 0.631 0.187 0.788 sum 3.967 -10.946 8.552 14.446 Atomic orbital electron populations 1.20816 0.82212 0.95563 0.99487 1.44159 1.02036 1.00333 1.84255 1.19259 0.97068 0.84518 1.36382 0.91079 1.24989 0.97974 0.98385 0.98522 1.70103 1.18910 1.26560 1.39757 0.86260 0.78724 0.84041 0.77490 1.21447 1.21947 1.20570 1.19461 0.96571 0.88517 0.86578 1.24074 0.91655 0.93588 1.00142 1.20873 1.04790 1.09124 0.94272 1.20778 0.91033 0.97419 0.96967 1.48664 1.20683 1.35881 1.11436 1.77366 1.24306 1.19036 0.89567 1.21554 0.92001 1.02743 0.82150 1.21925 1.01021 0.97735 0.96714 1.21643 0.98248 0.96773 0.99387 1.20352 0.97966 0.98757 0.92270 0.95363 0.93664 0.98132 0.93963 0.92375 0.92195 0.84675 0.90857 0.89587 0.90726 0.89672 0.90807 0.91454 0.89682 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.22 9.02 59.85 0.54 4.76 16 2 N -0.59 -15.66 2.91 -182.50 -0.53 -16.19 16 3 C -0.24 -7.06 9.68 -15.06 -0.15 -7.21 16 4 H 0.07 2.06 7.86 -52.49 -0.41 1.65 16 5 C 0.00 -0.03 5.06 -17.43 -0.09 -0.11 16 6 N -0.91 -27.79 10.67 55.49 0.59 -27.20 16 7 Si 0.90 23.03 29.58 -169.99 -5.03 18.00 16 8 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 9 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 11 C 0.22 4.95 6.27 -5.19 -0.03 4.92 16 12 C 0.08 1.72 6.81 -82.26 -0.56 1.16 16 13 C -0.26 -5.19 10.69 -40.14 -0.43 -5.62 16 14 C 0.06 1.14 6.59 -82.22 -0.54 0.60 16 15 N -0.38 -7.36 4.04 -56.95 -0.23 -7.59 16 16 N -0.28 -6.62 12.62 33.73 0.43 -6.19 16 17 C 0.14 1.95 7.28 -3.87 -0.03 1.92 16 18 C -0.14 -1.45 5.93 -26.52 -0.16 -1.61 16 19 C -0.12 -1.21 5.97 -26.42 -0.16 -1.37 16 20 C -0.05 -0.67 6.29 -27.56 -0.17 -0.85 16 21 H 0.03 0.80 7.40 -51.93 -0.38 0.41 16 22 H 0.04 1.23 7.21 -51.93 -0.37 0.86 16 23 H 0.00 0.00 7.84 -51.93 -0.41 -0.40 16 24 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.06 1.29 8.03 -51.93 -0.42 0.88 16 26 H 0.06 1.17 7.86 -51.93 -0.41 0.77 16 27 H 0.14 2.40 8.06 -52.48 -0.42 1.97 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 288.36 15.07 4.35 4.35 Total: -1.00 -34.60 288.36 -7.54 -42.14 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.34 Total: -3.91 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.77 Total: -3.41 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.26 Total: -57.17 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.03 Total: 18.00 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.60 -7.54 -42.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593008711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.889 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds