Wall clock time and date at job start Sun Mar 29 2020 22:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 120.00183 * 2 1 4 4 H 1.07994 * 120.00127 * 200.36786 * 3 2 1 5 5 C 1.38814 * 119.99829 * 20.36973 * 3 2 1 6 6 N 1.31615 * 120.00230 * 14.98485 * 5 3 2 7 7 Si 1.86797 * 119.99615 * 194.98253 * 5 3 2 8 8 H 1.48494 * 109.47147 * 85.00553 * 7 5 3 9 9 H 1.48511 * 109.46948 * 205.00417 * 7 5 3 10 10 H 1.48498 * 109.47482 * 324.99814 * 7 5 3 11 11 C 1.46502 * 119.99973 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47063 * 270.00498 * 11 2 1 13 13 C 1.40053 * 125.87708 * 94.99788 * 12 11 2 14 14 C 1.34743 * 107.80098 * 180.02562 * 13 12 11 15 15 N 1.35291 * 107.91291 * 0.05971 * 14 13 12 16 16 N 1.31022 * 125.87051 * 275.02117 * 12 11 2 17 17 C 1.46586 * 124.54680 * 179.88137 * 15 14 13 18 18 C 1.53245 * 108.80244 * 342.73247 * 17 15 14 19 19 C 1.53155 * 109.55687 * 50.56401 * 18 17 15 20 20 C 1.50880 * 127.76546 * 180.08557 * 14 13 12 21 21 H 1.09000 * 109.47190 * 275.10253 * 1 2 3 22 22 H 1.09004 * 109.46742 * 35.09221 * 1 2 3 23 23 H 1.08997 * 109.47633 * 155.09422 * 1 2 3 24 24 H 0.96993 * 120.00297 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.47234 * 150.00196 * 11 2 1 26 26 H 1.08998 * 109.46546 * 30.00307 * 11 2 1 27 27 H 1.08005 * 126.10203 * 359.96969 * 13 12 11 28 28 H 1.08997 * 109.58485 * 102.53021 * 17 15 14 29 29 H 1.08999 * 109.58352 * 222.80312 * 17 15 14 30 30 H 1.09000 * 109.45682 * 290.54142 * 18 17 15 31 31 H 1.08990 * 109.46237 * 170.59006 * 18 17 15 32 32 H 1.08993 * 109.51716 * 170.65428 * 19 18 17 33 33 H 1.09001 * 109.51416 * 50.48271 * 19 18 17 34 34 H 1.08994 * 109.72258 * 44.54201 * 20 14 13 35 35 H 1.09000 * 109.72085 * 283.87739 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3255 5 6 1.5208 2.3505 0.4185 6 7 0.3877 2.2836 1.0847 7 14 2.2827 4.0126 0.0359 8 1 1.8684 4.4461 -1.3226 9 1 1.8226 5.0099 1.0356 10 1 3.7626 3.9033 0.0909 11 6 2.1975 -1.2687 0.0006 12 6 2.4485 -1.7032 1.4216 13 6 1.6528 -2.5858 2.1627 14 6 2.2094 -2.7166 3.3828 15 7 3.3195 -1.9441 3.4188 16 7 3.4486 -1.3198 2.1763 17 6 4.2041 -1.8136 4.5804 18 6 3.4625 -2.3135 5.8247 19 6 2.8684 -3.6974 5.5460 20 6 1.7222 -3.5600 4.5351 21 1 -0.3633 0.0914 1.0236 22 1 -0.3633 0.8409 -0.5908 23 1 -0.3634 -0.9320 -0.4328 24 1 -0.0520 3.0973 1.3768 25 1 3.1499 -1.1387 -0.5133 26 1 1.6084 -2.0285 -0.5130 27 1 0.7530 -3.0738 1.8182 28 1 5.1018 -2.4120 4.4250 29 1 4.4808 -0.7677 4.7132 30 1 2.6611 -1.6179 6.0737 31 1 4.1588 -2.3791 6.6606 32 1 2.4866 -4.1234 6.4737 33 1 3.6399 -4.3489 5.1355 34 1 1.4316 -4.5458 4.1723 35 1 0.8689 -3.0759 5.0102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593008711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:44 Heat of formation + Delta-G solvation = 70.302466 kcal Electronic energy + Delta-G solvation = -16771.039948 eV Core-core repulsion = 14191.208852 eV Total energy + Delta-G solvation = -2579.831095 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.24524 -37.93369 -36.85768 -33.65742 -33.15077 -31.28082 -29.17291 -28.07835 -27.53957 -24.89976 -23.55363 -22.63312 -20.86066 -19.49983 -18.73823 -17.43366 -16.91393 -16.49381 -15.62729 -15.40039 -15.22212 -15.05210 -14.92165 -14.50604 -14.26993 -13.87350 -13.38558 -12.93578 -12.84814 -12.67944 -12.56737 -12.28938 -12.03485 -11.98931 -11.93282 -11.87272 -11.69071 -11.18801 -10.65523 -9.85369 -9.28502 -8.86406 -7.83966 -5.29371 1.10732 1.42044 1.44280 1.52354 1.80468 1.99714 2.52347 3.29953 3.54382 3.72324 3.82260 3.85883 3.88977 4.14724 4.32063 4.45970 4.52042 4.65815 4.82764 4.83363 4.85789 4.87825 4.88878 4.98826 5.02872 5.17317 5.29320 5.33116 5.43674 5.61654 5.71985 5.91814 6.30361 6.37384 7.04947 7.15618 7.84660 8.27029 9.19582 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031000 B = 0.007058 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.997901 B = 3966.331712 C = 4335.526161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.252 4.252 4 H 0.065 0.935 5 C -0.056 4.056 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.277 1.277 9 H -0.295 1.295 10 H -0.276 1.276 11 C 0.218 3.782 12 C 0.054 3.946 13 C -0.290 4.290 14 C 0.076 3.924 15 N -0.385 5.385 16 N -0.337 5.337 17 C 0.122 3.878 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.056 4.056 21 H -0.003 1.003 22 H 0.021 0.979 23 H 0.040 0.960 24 H 0.246 0.754 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.152 0.848 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 -14.140 9.675 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.324 5.324 3 C -0.382 4.382 4 H 0.083 0.917 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.797 3.203 8 H -0.204 1.204 9 H -0.222 1.222 10 H -0.201 1.201 11 C 0.089 3.911 12 C -0.114 4.114 13 C -0.320 4.320 14 C -0.052 4.052 15 N -0.169 5.169 16 N -0.160 5.160 17 C 0.001 3.999 18 C -0.166 4.166 19 C -0.154 4.154 20 C -0.094 4.094 21 H 0.015 0.985 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.169 0.831 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.820 -13.262 9.894 17.234 hybrid contribution -0.479 1.029 -0.231 1.158 sum 4.341 -12.233 9.663 16.182 Atomic orbital electron populations 1.20558 0.82015 0.96498 0.97406 1.44304 1.02417 1.01072 1.84655 1.19472 0.96931 0.85983 1.35820 0.91749 1.25750 0.98732 1.01702 0.98853 1.70274 1.20242 1.26953 1.41072 0.85260 0.77981 0.79681 0.77404 1.20381 1.22168 1.20081 1.19544 0.96472 0.87700 0.87354 1.23966 0.92645 0.94822 1.00003 1.21176 1.05760 1.09811 0.95241 1.21631 0.89526 0.96203 0.97834 1.49016 1.21638 1.35141 1.11114 1.77203 1.25804 1.21013 0.91951 1.22041 0.92836 1.02836 0.82151 1.21971 1.01138 0.97855 0.95679 1.21675 0.97393 0.96228 1.00140 1.20619 0.99083 0.98796 0.90908 0.98511 0.96046 0.94164 0.94464 0.92903 0.89140 0.83057 0.88908 0.90827 0.92040 0.85943 0.87309 0.90872 0.87252 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.41 9.02 127.77 1.15 10.56 16 2 N -0.60 -32.71 2.91 -731.31 -2.13 -34.84 16 3 C -0.25 -15.00 9.68 84.03 0.81 -14.18 16 4 H 0.06 3.83 7.86 -2.91 -0.02 3.81 16 5 C -0.06 -3.35 5.06 84.86 0.43 -2.92 16 6 N -0.94 -58.94 10.67 21.65 0.23 -58.71 16 7 Si 0.97 48.24 29.58 68.60 2.03 50.27 16 8 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 9 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 11 C 0.22 9.95 6.27 85.63 0.54 10.49 16 12 C 0.05 2.50 6.81 43.12 0.29 2.79 16 13 C -0.29 -11.40 10.69 21.91 0.23 -11.17 16 14 C 0.08 2.58 6.59 41.28 0.27 2.85 16 15 N -0.39 -14.59 4.04 -334.10 -1.35 -15.94 16 16 N -0.34 -16.15 12.62 -47.18 -0.60 -16.74 16 17 C 0.12 3.27 7.28 86.45 0.63 3.90 16 18 C -0.13 -2.31 5.93 30.73 0.18 -2.13 16 19 C -0.12 -1.79 5.97 30.80 0.18 -1.60 16 20 C -0.06 -1.18 6.29 30.05 0.19 -0.99 16 21 H 0.00 -0.20 7.40 -2.39 -0.02 -0.22 16 22 H 0.02 1.18 7.21 -2.38 -0.02 1.16 16 23 H 0.04 1.73 7.84 -2.39 -0.02 1.72 16 24 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 25 H 0.05 2.41 8.03 -2.39 -0.02 2.39 16 26 H 0.09 3.47 7.86 -2.39 -0.02 3.45 16 27 H 0.15 5.20 8.06 -2.91 -0.02 5.18 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 30 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 31 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.08 8.12 -2.39 -0.02 1.07 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -77.51 288.36 4.16 -73.35 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.06 Total: 5.00 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 4.92 Total: -2.39 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -3.84 Total: -126.23 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -77.51 4.16 -73.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593008711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.655 kcal (2) G-P(sol) polarization free energy of solvation -77.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds