Wall clock time and date at job start Sun Mar 29 2020 22:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99843 * 2 1 4 4 C 1.50698 * 109.47705 * 66.04480 * 3 2 1 5 5 H 1.08004 * 119.99401 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00460 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99724 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99970 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47045 * 60.00435 * 8 6 4 10 10 H 1.48505 * 109.46860 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47134 * 300.00042 * 8 6 4 12 12 C 1.46897 * 111.00270 * 236.04506 * 2 1 3 13 13 C 1.50704 * 109.46923 * 293.95605 * 12 2 1 14 14 C 1.39786 * 125.89696 * 94.99693 * 13 12 2 15 15 C 1.35539 * 107.89386 * 180.02562 * 14 13 12 16 16 N 1.34715 * 107.88239 * 359.87905 * 15 14 13 17 17 N 1.30710 * 125.89023 * 274.97284 * 13 12 2 18 18 C 1.47147 * 111.00938 * 180.22194 * 16 15 14 19 19 C 1.54376 * 105.64079 * 342.81263 * 18 16 15 20 20 C 1.51418 * 141.97278 * 179.72830 * 15 14 13 21 21 H 1.09004 * 109.47027 * 183.95362 * 1 2 3 22 22 H 1.08996 * 109.47066 * 303.95785 * 1 2 3 23 23 H 1.09004 * 109.46918 * 63.95670 * 1 2 3 24 24 H 1.09004 * 109.47090 * 186.04860 * 3 2 1 25 25 H 1.09000 * 109.47078 * 306.04213 * 3 2 1 26 26 H 0.96996 * 119.99560 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47407 * 173.95741 * 12 2 1 28 28 H 1.08996 * 109.46984 * 53.95287 * 12 2 1 29 29 H 1.07999 * 126.05304 * 0.05479 * 14 13 12 30 30 H 1.09002 * 110.22893 * 101.88068 * 18 16 15 31 31 H 1.09000 * 110.22761 * 223.75052 * 18 16 15 32 32 H 1.09000 * 110.97115 * 143.88304 * 19 18 16 33 33 H 1.09002 * 110.97310 * 267.65321 * 19 18 16 34 34 H 1.08993 * 110.49040 * 315.33607 * 20 15 14 35 35 H 1.09002 * 110.48515 * 77.97913 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0016 0.6152 8 14 1.5826 4.1871 3.1380 9 1 2.1733 3.4295 4.2704 10 1 2.1159 5.5730 3.1385 11 1 0.1053 4.2245 3.2845 12 6 1.9955 -0.7660 -1.1375 13 6 1.6369 -2.2204 -0.9728 14 6 0.5253 -2.8588 -1.5303 15 6 0.5574 -4.1592 -1.1495 16 7 1.6498 -4.3386 -0.3818 17 7 2.3120 -3.1028 -0.2842 18 6 1.7552 -5.7358 0.0674 19 6 0.3550 -6.3491 -0.1480 20 6 -0.2033 -5.4612 -1.2863 21 1 -0.3633 -1.0253 0.0709 22 1 -0.3633 0.5740 0.8524 23 1 -0.3633 0.4512 -0.9234 24 1 3.0797 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 2.9880 4.9174 0.7775 27 1 3.0797 -0.6611 -1.1755 28 1 1.5612 -0.3873 -2.0627 29 1 -0.2258 -2.3976 -2.1544 30 1 2.4959 -6.2686 -0.5290 31 1 2.0245 -5.7730 1.1230 32 1 0.4292 -7.3896 -0.4640 33 1 -0.2533 -6.2586 0.7520 34 1 -1.2719 -5.2948 -1.1506 35 1 -0.0075 -5.9172 -2.2568 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593014903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:14 Heat of formation + Delta-G solvation = 93.768776 kcal Electronic energy + Delta-G solvation = -16206.324578 eV Core-core repulsion = 13627.511058 eV Total energy + Delta-G solvation = -2578.813520 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48090 -37.06040 -35.60358 -32.49705 -30.82599 -29.70771 -27.62362 -26.74816 -26.25170 -23.74653 -21.78344 -20.58367 -20.00398 -18.84674 -16.67619 -16.24594 -15.75726 -14.88205 -14.44186 -14.30309 -13.81088 -13.63504 -13.47552 -13.20012 -12.60461 -12.55032 -11.89948 -11.80578 -11.77916 -11.37039 -11.30778 -10.95585 -10.80281 -10.62948 -10.37967 -10.14706 -9.77882 -9.19895 -8.80657 -8.37096 -8.24649 -7.14979 -5.96123 -3.96802 2.08491 2.49897 3.05953 3.38669 3.41989 3.45904 3.96408 4.35436 4.48940 4.49775 4.69181 5.06549 5.21845 5.23985 5.30929 5.34796 5.40332 5.50059 5.66129 5.72710 5.89462 6.07831 6.18272 6.34737 6.37995 6.49247 6.85403 6.97296 7.07533 7.35949 7.40661 7.86715 8.11530 8.18029 8.28985 8.61894 9.10345 9.66722 11.14883 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.049018 B = 0.004762 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.082937 B = 5878.339114 C = 6000.332890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 C 0.102 3.898 14 C -0.250 4.250 15 C 0.047 3.953 16 N -0.401 5.401 17 N -0.256 5.256 18 C 0.132 3.868 19 C -0.132 4.132 20 C -0.063 4.063 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.012 0.988 24 H 0.031 0.969 25 H -0.007 1.007 26 H 0.261 0.739 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.140 0.860 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 -19.927 -4.844 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.259 5.259 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.002 3.998 13 C -0.066 4.066 14 C -0.280 4.280 15 C -0.081 4.081 16 N -0.183 5.183 17 N -0.076 5.076 18 C 0.010 3.990 19 C -0.171 4.171 20 C -0.102 4.102 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.030 0.970 24 H 0.050 0.950 25 H 0.011 0.989 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.158 0.842 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.511 -20.262 -3.567 21.063 hybrid contribution -1.134 1.083 -0.367 1.610 sum -5.645 -19.180 -3.934 20.376 Atomic orbital electron populations 1.22234 0.88706 0.99734 1.00358 1.62046 1.07188 1.17596 1.39060 1.19756 0.95520 0.81139 0.96744 1.21122 1.34728 0.96841 1.01669 0.91943 1.24975 0.95348 0.97309 0.96963 1.69952 1.38443 1.11490 1.34082 0.86556 0.78653 0.78280 0.83883 1.20205 1.21371 1.20307 1.20389 1.00867 0.84994 0.93537 1.22397 0.93218 0.96135 0.94816 1.20561 1.03536 0.91733 1.12176 1.22107 0.92481 0.96175 0.97310 1.50143 1.20312 1.07633 1.40255 1.77505 1.20063 0.86995 1.23064 1.22200 0.98714 0.76404 1.01658 1.22824 0.94651 0.99841 0.99743 1.20856 1.00107 0.89757 0.99495 0.93466 0.90894 0.96999 0.95046 0.98905 0.92917 0.89862 0.93619 0.84169 0.89854 0.89323 0.88370 0.89563 0.89032 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.14 60.07 0.55 1.36 16 2 N -0.53 -12.53 4.74 -245.83 -1.17 -13.69 16 3 C 0.19 5.25 4.72 -4.98 -0.02 5.23 16 4 C -0.50 -14.72 8.46 -34.44 -0.29 -15.01 16 5 H 0.06 1.81 7.12 -52.48 -0.37 1.44 16 6 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 7 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 8 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.13 2.67 5.53 -4.98 -0.03 2.64 16 13 C 0.10 1.93 5.92 -82.49 -0.49 1.44 16 14 C -0.25 -4.02 9.76 -39.97 -0.39 -4.41 16 15 C 0.05 0.66 7.49 -81.94 -0.61 0.04 16 16 N -0.40 -6.17 4.85 -55.72 -0.27 -6.44 16 17 N -0.26 -5.03 12.70 33.64 0.43 -4.60 16 18 C 0.13 1.28 7.77 -2.97 -0.02 1.26 16 19 C -0.13 -0.86 7.19 -25.07 -0.18 -1.04 16 20 C -0.06 -0.53 6.86 -26.59 -0.18 -0.71 16 21 H 0.05 0.91 6.55 -51.93 -0.34 0.57 16 22 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.03 0.90 7.93 -51.93 -0.41 0.49 16 25 H -0.01 -0.19 8.12 -51.93 -0.42 -0.62 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.08 1.70 7.93 -51.93 -0.41 1.29 16 28 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 29 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -34.26 290.63 -7.93 -42.20 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -5.25 Total: -4.78 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.77 Total: -7.69 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.27 Total: -51.30 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.26 -7.93 -42.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593014903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.965 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds