Wall clock time and date at job start Sun Mar 29 2020 22:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99843 * 2 1 4 4 C 1.50698 * 109.47705 * 66.04480 * 3 2 1 5 5 H 1.08004 * 119.99401 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00460 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99724 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99970 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47045 * 60.00435 * 8 6 4 10 10 H 1.48505 * 109.46860 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47134 * 300.00042 * 8 6 4 12 12 C 1.46897 * 111.00270 * 236.04506 * 2 1 3 13 13 C 1.50704 * 109.46923 * 293.95605 * 12 2 1 14 14 C 1.39786 * 125.89696 * 94.99693 * 13 12 2 15 15 C 1.35539 * 107.89386 * 180.02562 * 14 13 12 16 16 N 1.34715 * 107.88239 * 359.87905 * 15 14 13 17 17 N 1.30710 * 125.89023 * 274.97284 * 13 12 2 18 18 C 1.47147 * 111.00938 * 180.22194 * 16 15 14 19 19 C 1.54376 * 105.64079 * 342.81263 * 18 16 15 20 20 C 1.51418 * 141.97278 * 179.72830 * 15 14 13 21 21 H 1.09004 * 109.47027 * 183.95362 * 1 2 3 22 22 H 1.08996 * 109.47066 * 303.95785 * 1 2 3 23 23 H 1.09004 * 109.46918 * 63.95670 * 1 2 3 24 24 H 1.09004 * 109.47090 * 186.04860 * 3 2 1 25 25 H 1.09000 * 109.47078 * 306.04213 * 3 2 1 26 26 H 0.96996 * 119.99560 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47407 * 173.95741 * 12 2 1 28 28 H 1.08996 * 109.46984 * 53.95287 * 12 2 1 29 29 H 1.07999 * 126.05304 * 0.05479 * 14 13 12 30 30 H 1.09002 * 110.22893 * 101.88068 * 18 16 15 31 31 H 1.09000 * 110.22761 * 223.75052 * 18 16 15 32 32 H 1.09000 * 110.97115 * 143.88304 * 19 18 16 33 33 H 1.09002 * 110.97310 * 267.65321 * 19 18 16 34 34 H 1.08993 * 110.49040 * 315.33607 * 20 15 14 35 35 H 1.09002 * 110.48515 * 77.97913 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0016 0.6152 8 14 1.5826 4.1871 3.1380 9 1 2.1733 3.4295 4.2704 10 1 2.1159 5.5730 3.1385 11 1 0.1053 4.2245 3.2845 12 6 1.9955 -0.7660 -1.1375 13 6 1.6369 -2.2204 -0.9728 14 6 0.5253 -2.8588 -1.5303 15 6 0.5574 -4.1592 -1.1495 16 7 1.6498 -4.3386 -0.3818 17 7 2.3120 -3.1028 -0.2842 18 6 1.7552 -5.7358 0.0674 19 6 0.3550 -6.3491 -0.1480 20 6 -0.2033 -5.4612 -1.2863 21 1 -0.3633 -1.0253 0.0709 22 1 -0.3633 0.5740 0.8524 23 1 -0.3633 0.4512 -0.9234 24 1 3.0797 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 2.9880 4.9174 0.7775 27 1 3.0797 -0.6611 -1.1755 28 1 1.5612 -0.3873 -2.0627 29 1 -0.2258 -2.3976 -2.1544 30 1 2.4959 -6.2686 -0.5290 31 1 2.0245 -5.7730 1.1230 32 1 0.4292 -7.3896 -0.4640 33 1 -0.2533 -6.2586 0.7520 34 1 -1.2719 -5.2948 -1.1506 35 1 -0.0075 -5.9172 -2.2568 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593014903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:14 Heat of formation + Delta-G solvation = 69.211816 kcal Electronic energy + Delta-G solvation = -16207.389447 eV Core-core repulsion = 13627.511058 eV Total energy + Delta-G solvation = -2579.878389 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.61092 -38.58803 -36.87903 -34.66425 -31.92148 -30.95407 -29.31771 -28.36402 -27.50009 -25.59427 -22.76149 -22.26639 -21.16232 -20.16585 -18.47444 -17.54030 -16.89903 -16.68882 -16.12272 -15.85958 -15.41343 -14.92721 -14.50063 -14.13492 -13.97762 -13.72580 -13.64703 -13.38092 -12.99859 -12.84727 -12.60928 -12.51834 -12.41076 -12.29341 -11.95779 -11.87613 -11.42659 -11.31099 -10.61427 -10.01662 -9.44304 -9.03164 -8.20114 -6.30497 0.92884 1.40513 1.44699 1.48610 1.52585 1.74444 2.41451 3.11929 3.19235 3.46986 3.65047 3.75369 3.95518 4.09226 4.32520 4.44244 4.49190 4.59482 4.61785 4.68067 4.74009 4.86646 4.89112 5.03440 5.05453 5.15987 5.16648 5.24562 5.27186 5.63065 5.71363 6.01753 6.04510 6.31581 6.57233 6.83922 6.90053 7.38636 8.90968 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.049018 B = 0.004762 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.082937 B = 5878.339114 C = 6000.332890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.548 5.548 3 C 0.209 3.791 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.265 1.265 12 C 0.136 3.864 13 C 0.083 3.917 14 C -0.275 4.275 15 C 0.059 3.941 16 N -0.404 5.404 17 N -0.312 5.312 18 C 0.113 3.887 19 C -0.115 4.115 20 C -0.061 4.061 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.021 0.979 24 H 0.003 0.997 25 H -0.028 1.028 26 H 0.266 0.734 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.154 0.846 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 -22.288 -4.393 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.273 5.273 3 C 0.083 3.917 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.190 1.190 12 C 0.006 3.994 13 C -0.082 4.082 14 C -0.305 4.305 15 C -0.070 4.070 16 N -0.187 5.187 17 N -0.134 5.134 18 C -0.006 4.006 19 C -0.153 4.153 20 C -0.099 4.099 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.021 0.979 25 H -0.010 1.010 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.171 0.829 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.157 0.843 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.323 -22.652 -3.119 23.724 hybrid contribution -0.539 1.662 -0.546 1.831 sum -6.862 -20.990 -3.666 22.385 Atomic orbital electron populations 1.22150 0.87159 1.00698 1.00048 1.61932 1.08677 1.15454 1.41195 1.19405 0.93698 0.83096 0.95515 1.21398 1.35191 0.97583 1.02285 0.92246 1.25910 0.94889 0.97877 1.00814 1.70078 1.39136 1.11962 1.36198 0.85412 0.78937 0.77175 0.78927 1.19689 1.20474 1.18999 1.20287 0.99905 0.86274 0.92901 1.22129 0.94745 0.95173 0.96181 1.20742 1.03397 0.92957 1.13394 1.22970 0.92050 0.97208 0.94812 1.50581 1.20086 1.08083 1.39998 1.77315 1.22184 0.89216 1.24705 1.22787 1.01833 0.73911 1.02102 1.22913 0.91811 1.01254 0.99368 1.21139 1.00432 0.86854 1.01490 0.91518 0.92471 0.96088 0.97884 1.01020 0.92560 0.91423 0.92359 0.82873 0.88032 0.89277 0.84278 0.89088 0.87116 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.03 9.14 127.69 1.17 3.20 16 2 N -0.55 -26.66 4.74 -931.66 -4.42 -31.08 16 3 C 0.21 11.90 4.72 85.56 0.40 12.30 16 4 C -0.53 -31.49 8.46 25.60 0.22 -31.27 16 5 H 0.06 3.52 7.12 -2.91 -0.02 3.49 16 6 C 0.00 0.19 5.46 84.65 0.46 0.65 16 7 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 8 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 C 0.14 5.75 5.53 85.56 0.47 6.22 16 13 C 0.08 3.23 5.92 43.10 0.26 3.48 16 14 C -0.28 -8.64 9.76 22.02 0.21 -8.42 16 15 C 0.06 1.52 7.49 41.72 0.31 1.83 16 16 N -0.40 -11.95 4.85 -330.19 -1.60 -13.55 16 17 N -0.31 -12.51 12.70 -47.49 -0.60 -13.11 16 18 C 0.11 1.90 7.77 86.72 0.67 2.57 16 19 C -0.12 -0.96 7.19 31.67 0.23 -0.73 16 20 C -0.06 -0.74 6.86 30.68 0.21 -0.53 16 21 H 0.07 2.57 6.55 -2.38 -0.02 2.55 16 22 H 0.06 2.59 6.76 -2.39 -0.02 2.57 16 23 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.00 0.19 7.93 -2.38 -0.02 0.17 16 25 H -0.03 -1.67 8.12 -2.39 -0.02 -1.69 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.07 2.98 7.93 -2.39 -0.02 2.96 16 28 H 0.06 2.26 8.12 -2.39 -0.02 2.24 16 29 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.11 290.63 1.37 -75.75 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 1.06 Total: 2.39 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.62 Total: -10.69 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -6.34 Total: -115.25 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -77.11 1.37 -75.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593014903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.959 kcal (2) G-P(sol) polarization free energy of solvation -77.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds