Wall clock time and date at job start Sun Mar 29 2020 21:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46505 * 125.86763 * 180.17814 * 12 11 10 14 14 C 1.52998 * 109.46658 * 125.29510 * 13 12 11 15 15 C 1.54264 * 110.03481 * 292.16820 * 14 13 12 16 16 C 1.54895 * 104.19394 * 217.10222 * 15 14 13 17 17 C 1.54893 * 102.74660 * 37.94812 * 16 15 14 18 18 C 1.53880 * 110.03137 * 174.99857 * 14 13 12 19 19 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 20 20 N 1.28632 * 110.17939 * 359.72812 * 19 12 11 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 25 25 H 1.09001 * 109.47211 * 245.29764 * 13 12 11 26 26 H 1.08999 * 109.47008 * 5.29843 * 13 12 11 27 27 H 1.09007 * 110.01912 * 53.61381 * 14 13 12 28 28 H 1.08997 * 110.48796 * 335.78670 * 15 14 13 29 29 H 1.09008 * 110.48461 * 98.42922 * 15 14 13 30 30 H 1.08995 * 110.75931 * 279.62620 * 16 15 14 31 31 H 1.09007 * 110.90773 * 156.33104 * 16 15 14 32 32 H 1.08997 * 110.48379 * 203.37482 * 17 16 15 33 33 H 1.08997 * 110.59786 * 80.78581 * 17 16 15 34 34 H 1.09002 * 110.03409 * 238.57142 * 18 14 13 35 35 H 1.09002 * 110.02934 * 359.95708 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.8698 -3.1744 -0.8760 12 7 5.0376 -4.4573 -0.4799 13 6 5.8860 -5.4546 -1.1371 14 6 6.8674 -6.0394 -0.1195 15 6 7.8832 -4.9625 0.3143 16 6 9.2148 -5.7380 0.4718 17 6 9.1614 -6.7502 -0.6994 18 6 7.6801 -7.1761 -0.7640 19 7 4.3199 -4.6523 0.5707 20 7 3.6970 -3.5728 0.8891 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 5.3283 -2.6931 -1.7272 25 1 5.2627 -6.2525 -1.5409 26 1 6.4413 -4.9820 -1.9473 27 1 6.3254 -6.4140 0.7490 28 1 7.9771 -4.1951 -0.4540 29 1 7.5859 -4.5183 1.2643 30 1 9.2488 -6.2568 1.4297 31 1 10.0692 -5.0693 0.3658 32 1 9.7969 -7.6105 -0.4892 33 1 9.4624 -6.2736 -1.6322 34 1 7.5332 -8.1020 -0.2078 35 1 7.3747 -7.3116 -1.8015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594649745.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:03 Heat of formation + Delta-G solvation = 53.087973 kcal Electronic energy + Delta-G solvation = -16174.979336 eV Core-core repulsion = 13594.401764 eV Total energy + Delta-G solvation = -2580.577572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.04555 -39.39319 -35.93934 -34.91680 -33.12247 -31.15996 -29.74427 -29.57131 -26.51101 -25.08578 -22.74582 -22.04824 -21.44445 -20.37233 -18.90892 -18.28494 -17.24608 -16.53562 -16.25673 -15.87170 -15.49173 -15.09650 -14.74752 -14.24964 -14.18589 -13.90916 -13.41239 -12.90437 -12.53183 -12.40803 -12.16700 -12.09658 -11.97069 -11.95770 -11.85532 -11.65017 -11.59451 -11.42996 -11.28700 -10.76592 -10.71844 -9.84760 -8.24046 -6.29436 0.80023 1.40967 1.45767 1.57292 1.63427 1.77551 2.41535 3.10083 3.43796 3.56168 3.66352 3.74297 4.01171 4.24278 4.28492 4.29983 4.42941 4.52082 4.58992 4.64470 4.71456 4.82191 4.86878 4.96670 5.07440 5.10035 5.23968 5.27102 5.36462 5.38317 5.41598 5.47949 5.63474 5.89035 6.32973 6.75836 7.32354 7.74201 8.93978 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.053346 B = 0.004855 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.744494 B = 5766.019549 C = 6032.022973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.254 1.254 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.519 4.519 8 H 0.016 0.984 9 C 0.067 3.933 10 C -0.011 4.011 11 C -0.049 4.049 12 N -0.280 5.280 13 C 0.113 3.887 14 C -0.103 4.103 15 C -0.122 4.122 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.111 4.111 19 N -0.123 5.123 20 N -0.316 5.316 21 H 0.267 0.733 22 H 0.060 0.940 23 H 0.032 0.968 24 H 0.231 0.769 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.271 -11.390 -6.600 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.178 1.178 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.558 4.558 8 H 0.035 0.965 9 C 0.028 3.972 10 C -0.150 4.150 11 C -0.200 4.200 12 N -0.075 5.075 13 C -0.006 4.006 14 C -0.122 4.122 15 C -0.160 4.160 16 C -0.161 4.161 17 C -0.156 4.156 18 C -0.149 4.149 19 N -0.101 5.101 20 N -0.181 5.181 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.247 0.753 25 H 0.126 0.874 26 H 0.158 0.842 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 22.704 -12.372 -5.537 26.442 hybrid contribution -0.396 1.298 -0.349 1.401 sum 22.308 -11.074 -5.886 25.591 Atomic orbital electron populations 1.70094 1.08667 1.28280 1.52634 1.26099 0.95711 1.03786 0.93856 0.85520 0.79349 0.77132 0.79777 1.17850 1.21290 1.16612 1.21148 0.91185 0.92802 1.50629 0.96544 1.17960 0.94043 0.86830 0.98343 1.22422 0.99114 0.98654 0.94765 1.23831 1.05547 0.85693 1.04901 1.47633 1.30472 1.10337 1.19081 1.22781 0.91721 0.90326 0.95789 1.22075 0.95520 0.96883 0.97746 1.22437 0.95548 0.97589 1.00435 1.22486 0.96370 0.98045 0.99153 1.22361 0.95789 0.98927 0.98568 1.22126 0.94568 0.96381 1.01798 1.78050 1.07685 1.20630 1.03769 1.75009 1.19812 0.97385 1.25944 0.92428 0.92148 0.94954 0.75284 0.87415 0.84204 0.91893 0.90667 0.94699 0.92101 0.90721 0.90592 0.90240 0.91044 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.32 13.96 21.45 0.30 -62.02 16 2 C 0.00 0.09 5.47 84.66 0.46 0.55 16 3 Si 0.96 44.07 27.47 68.60 1.88 45.96 16 4 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 7 C -0.52 -31.87 9.64 25.60 0.25 -31.62 16 8 H 0.02 1.15 7.98 -2.91 -0.02 1.13 16 9 C 0.07 3.30 4.62 29.10 0.13 3.43 16 10 C -0.01 -0.49 6.44 41.60 0.27 -0.22 16 11 C -0.05 -1.61 11.49 83.49 0.96 -0.65 16 12 N -0.28 -8.66 3.26 -347.73 -1.13 -9.79 16 13 C 0.11 2.03 5.51 86.38 0.48 2.51 16 14 C -0.10 -1.81 2.99 -10.07 -0.03 -1.84 16 15 C -0.12 -2.25 6.19 31.67 0.20 -2.06 16 16 C -0.12 -1.69 6.91 31.89 0.22 -1.47 16 17 C -0.12 -1.17 6.83 31.67 0.22 -0.96 16 18 C -0.11 -1.22 6.46 31.32 0.20 -1.02 16 19 N -0.12 -5.08 12.82 37.02 0.47 -4.61 16 20 N -0.32 -15.77 12.40 -48.60 -0.60 -16.38 16 21 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 22 H 0.06 2.56 7.56 -2.38 -0.02 2.54 16 23 H 0.03 1.59 7.19 -2.39 -0.02 1.57 16 24 H 0.23 4.97 8.06 -2.91 -0.02 4.95 16 25 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.14 1.47 7.93 -2.39 -0.02 1.45 16 27 H 0.06 1.47 7.99 -2.38 -0.02 1.45 16 28 H 0.07 1.25 7.76 -2.39 -0.02 1.23 16 29 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.66 7.67 -2.39 -0.02 0.64 16 Total: -1.00 -80.91 290.65 5.28 -75.63 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.00 Total: 4.56 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 3.35 Total: -33.35 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -0.96 Total: -92.80 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -80.91 5.28 -75.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649745.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.722 kcal (2) G-P(sol) polarization free energy of solvation -80.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds