Wall clock time and date at job start Sun Mar 29 2020 21:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38388 * 120.00356 * 2 1 4 4 N 1.32122 * 119.99848 * 179.97438 * 3 2 1 5 5 C 1.32155 * 120.00350 * 359.97438 * 4 3 2 6 6 C 1.38342 * 119.99846 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99985 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46831 * 84.99964 * 7 6 5 9 9 N 1.46908 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.46894 * 110.99837 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47104 * 324.99694 * 10 9 8 12 12 C 1.52997 * 109.47515 * 84.99962 * 10 9 8 13 13 C 1.50708 * 109.46991 * 205.00145 * 10 9 8 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 9 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 9 16 16 N 1.31509 * 120.00195 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99968 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46959 * 89.99935 * 17 15 13 19 19 H 1.48491 * 109.47193 * 210.00326 * 17 15 13 20 20 H 1.48498 * 109.47096 * 330.00479 * 17 15 13 21 21 N 1.32131 * 120.00160 * 180.24634 * 2 1 3 22 22 H 1.08996 * 109.47092 * 90.00510 * 1 2 3 23 23 H 1.09003 * 109.47111 * 210.00486 * 1 2 3 24 24 H 1.09003 * 109.46860 * 330.00277 * 1 2 3 25 25 H 1.08005 * 119.99924 * 359.97243 * 3 2 1 26 26 H 1.07998 * 120.00508 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.46688 * 325.00044 * 7 6 5 28 28 H 1.09002 * 109.47055 * 204.99941 * 7 6 5 29 29 H 1.08993 * 109.47108 * 60.00380 * 8 7 6 30 30 H 1.09002 * 109.47282 * 299.99838 * 8 7 6 31 31 H 1.00898 * 110.99816 * 56.04433 * 9 8 7 32 32 H 1.09002 * 109.47153 * 59.99762 * 12 10 9 33 33 H 1.09001 * 109.46832 * 299.99953 * 12 10 9 34 34 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 35 35 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1983 0.0005 5 6 4.1810 0.0538 0.0015 6 6 3.4892 -1.1442 0.0026 7 6 4.2427 -2.4494 0.0032 8 6 4.6070 -2.8272 1.4403 9 7 5.3421 -4.0992 1.4409 10 6 5.7088 -4.4947 2.8072 11 1 5.9375 -3.6050 3.3940 12 6 4.5413 -5.2446 3.4519 13 6 6.9189 -5.3919 2.7628 14 1 7.3700 -5.6434 1.8143 15 6 7.4499 -5.8915 3.9329 16 7 6.9002 -5.5856 5.0878 17 14 8.9494 -7.0041 3.8778 18 1 10.1813 -6.1791 3.9626 19 1 8.9068 -7.9493 5.0223 20 1 8.9522 -7.7683 2.6046 21 7 2.1677 -1.1443 -0.0049 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6590 2.1338 -0.0005 26 1 5.2610 0.0537 0.0024 27 1 5.1531 -2.3435 -0.5867 28 1 3.6175 -3.2300 -0.4304 29 1 3.6966 -2.9330 2.0301 30 1 5.2322 -2.0466 1.8739 31 1 6.1570 -4.0461 0.8484 32 1 4.3126 -6.1343 2.8651 33 1 3.6661 -4.5956 3.4840 34 1 4.8136 -5.5384 4.4656 35 1 7.2736 -5.9374 5.9111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594717034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:41 Heat of formation + Delta-G solvation = 32.725949 kcal Electronic energy + Delta-G solvation = -15833.113016 eV Core-core repulsion = 13251.652481 eV Total energy + Delta-G solvation = -2581.460535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17885 -36.40975 -34.59029 -34.14119 -32.40708 -30.20191 -28.20525 -27.02893 -25.22925 -23.86891 -22.97117 -21.16990 -19.78528 -17.75147 -16.92326 -16.49841 -15.38878 -15.13665 -14.76837 -14.43135 -13.79909 -13.50555 -13.20496 -13.00442 -12.74761 -12.41668 -12.13928 -12.01437 -11.56828 -11.29156 -11.03500 -10.97036 -10.75044 -10.68329 -10.22196 -10.11104 -9.97238 -9.08887 -9.04459 -8.81534 -8.48185 -7.30725 -6.02981 -4.09793 0.71298 1.10563 3.29293 3.36102 3.39889 3.59593 3.88941 4.21693 4.37788 4.41242 4.66287 4.93869 5.15663 5.24175 5.28619 5.32665 5.38904 5.49633 5.58988 5.73089 5.83627 5.95064 6.33865 6.39429 6.46718 6.89147 7.14918 7.23199 7.26580 7.49314 7.77196 7.77695 7.89014 8.26865 8.36496 8.65180 9.00607 9.56279 11.03403 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.049414 B = 0.004306 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.502076 B = 6501.632509 C = 6711.026451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.081 3.919 3 C 0.033 3.967 4 N -0.435 5.435 5 C 0.042 3.958 6 C 0.104 3.896 7 C -0.068 4.068 8 C 0.071 3.929 9 N -0.687 5.687 10 C 0.211 3.789 11 H 0.001 0.999 12 C -0.124 4.124 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 N -0.437 5.437 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.165 0.835 26 H 0.169 0.831 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.331 0.669 32 H 0.032 0.968 33 H 0.003 0.997 34 H 0.080 0.920 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 11.383 -9.630 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.060 4.060 3 C -0.127 4.127 4 N -0.148 5.148 5 C -0.118 4.118 6 C -0.037 4.037 7 C -0.107 4.107 8 C -0.060 4.060 9 N -0.318 5.318 10 C 0.104 3.896 11 H 0.018 0.982 12 C -0.183 4.183 13 C -0.557 4.557 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.153 5.153 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.182 0.818 26 H 0.186 0.814 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.148 0.852 32 H 0.051 0.949 33 H 0.023 0.977 34 H 0.099 0.901 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.821 10.970 -9.433 17.487 hybrid contribution 1.519 0.098 0.322 1.556 sum -8.302 11.069 -9.111 16.567 Atomic orbital electron populations 1.20683 0.87868 1.03957 1.03321 1.22362 0.98454 0.89634 0.95562 1.23524 0.90971 0.99062 0.99133 1.68401 1.08811 1.29745 1.07874 1.23613 1.01932 0.88270 0.97954 1.22416 0.90343 0.97325 0.93620 1.20608 0.99012 0.91617 0.99501 1.21800 0.98952 0.92007 0.93263 1.60707 1.28654 1.27550 1.14921 1.19112 0.93368 0.94252 0.82871 0.98179 1.21713 0.95457 0.98338 1.02776 1.21262 1.11436 1.30068 0.92981 0.92129 1.24925 0.97299 0.96409 0.95391 1.69901 1.40379 1.45069 0.97531 0.86513 0.82791 0.80486 0.77708 1.20760 1.21202 1.19802 1.68213 1.08525 1.29166 1.09436 0.90110 0.90023 0.90323 0.81764 0.81404 0.89932 0.88890 0.91583 0.96217 0.85216 0.94888 0.97749 0.90121 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.19 36.01 0.37 -0.43 16 2 C 0.08 0.95 6.79 -82.41 -0.56 0.39 16 3 C 0.03 0.37 10.88 -17.37 -0.19 0.18 16 4 N -0.43 -5.81 10.50 -13.06 -0.14 -5.94 16 5 C 0.04 0.56 10.90 -17.37 -0.19 0.37 16 6 C 0.10 1.48 6.04 -82.41 -0.50 0.98 16 7 C -0.07 -0.99 5.76 -27.88 -0.16 -1.15 16 8 C 0.07 1.27 5.47 -3.82 -0.02 1.25 16 9 N -0.69 -14.55 6.30 -107.95 -0.68 -15.23 16 10 C 0.21 5.41 2.60 -68.87 -0.18 5.23 16 11 H 0.00 0.02 7.80 -51.93 -0.40 -0.39 16 12 C -0.12 -3.17 9.19 37.16 0.34 -2.83 16 13 C -0.52 -14.23 8.59 -34.44 -0.30 -14.53 16 14 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 N -0.44 -6.35 10.35 -5.56 -0.06 -6.40 16 22 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 25 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 26 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.07 1.30 7.44 -51.93 -0.39 0.91 16 30 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 31 H 0.33 6.63 8.23 -39.29 -0.32 6.30 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 34 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 296.90 15.07 4.47 4.47 Total: -1.00 -30.81 296.90 -7.42 -38.23 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.15 Total: 2.56 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.48 Total: -8.92 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.25 Total: -52.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.81 -7.42 -38.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594717034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.959 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds