Wall clock time and date at job start Sun Mar 29 2020 21:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38388 * 120.00356 * 2 1 4 4 N 1.32122 * 119.99848 * 179.97438 * 3 2 1 5 5 C 1.32155 * 120.00350 * 359.97438 * 4 3 2 6 6 C 1.38342 * 119.99846 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99985 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46831 * 84.99964 * 7 6 5 9 9 N 1.46908 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.46894 * 110.99837 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47104 * 324.99694 * 10 9 8 12 12 C 1.52997 * 109.47515 * 84.99962 * 10 9 8 13 13 C 1.50708 * 109.46991 * 205.00145 * 10 9 8 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 9 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 9 16 16 N 1.31509 * 120.00195 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99968 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46959 * 89.99935 * 17 15 13 19 19 H 1.48491 * 109.47193 * 210.00326 * 17 15 13 20 20 H 1.48498 * 109.47096 * 330.00479 * 17 15 13 21 21 N 1.32131 * 120.00160 * 180.24634 * 2 1 3 22 22 H 1.08996 * 109.47092 * 90.00510 * 1 2 3 23 23 H 1.09003 * 109.47111 * 210.00486 * 1 2 3 24 24 H 1.09003 * 109.46860 * 330.00277 * 1 2 3 25 25 H 1.08005 * 119.99924 * 359.97243 * 3 2 1 26 26 H 1.07998 * 120.00508 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.46688 * 325.00044 * 7 6 5 28 28 H 1.09002 * 109.47055 * 204.99941 * 7 6 5 29 29 H 1.08993 * 109.47108 * 60.00380 * 8 7 6 30 30 H 1.09002 * 109.47282 * 299.99838 * 8 7 6 31 31 H 1.00898 * 110.99816 * 56.04433 * 9 8 7 32 32 H 1.09002 * 109.47153 * 59.99762 * 12 10 9 33 33 H 1.09001 * 109.46832 * 299.99953 * 12 10 9 34 34 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 35 35 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1983 0.0005 5 6 4.1810 0.0538 0.0015 6 6 3.4892 -1.1442 0.0026 7 6 4.2427 -2.4494 0.0032 8 6 4.6070 -2.8272 1.4403 9 7 5.3421 -4.0992 1.4409 10 6 5.7088 -4.4947 2.8072 11 1 5.9375 -3.6050 3.3940 12 6 4.5413 -5.2446 3.4519 13 6 6.9189 -5.3919 2.7628 14 1 7.3700 -5.6434 1.8143 15 6 7.4499 -5.8915 3.9329 16 7 6.9002 -5.5856 5.0878 17 14 8.9494 -7.0041 3.8778 18 1 10.1813 -6.1791 3.9626 19 1 8.9068 -7.9493 5.0223 20 1 8.9522 -7.7683 2.6046 21 7 2.1677 -1.1443 -0.0049 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6590 2.1338 -0.0005 26 1 5.2610 0.0537 0.0024 27 1 5.1531 -2.3435 -0.5867 28 1 3.6175 -3.2300 -0.4304 29 1 3.6966 -2.9330 2.0301 30 1 5.2322 -2.0466 1.8739 31 1 6.1570 -4.0461 0.8484 32 1 4.3126 -6.1343 2.8651 33 1 3.6661 -4.5956 3.4840 34 1 4.8136 -5.5384 4.4656 35 1 7.2736 -5.9374 5.9111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594717034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:40 Heat of formation + Delta-G solvation = 11.148087 kcal Electronic energy + Delta-G solvation = -15834.048702 eV Core-core repulsion = 13251.652481 eV Total energy + Delta-G solvation = -2582.396222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.13532 -38.09502 -35.76942 -35.34980 -34.08281 -31.69470 -29.43883 -28.31054 -27.30004 -25.08351 -24.02862 -22.39837 -21.76054 -18.73509 -18.53054 -17.81168 -16.99197 -16.37536 -16.11857 -15.95144 -15.25028 -14.94442 -14.43669 -14.16241 -13.86736 -13.59731 -13.39580 -13.24098 -13.00940 -12.82353 -12.64052 -12.55940 -12.43414 -12.23626 -12.06545 -11.94328 -11.72733 -10.90891 -10.57821 -10.04751 -9.99080 -9.10433 -8.13452 -6.28209 -0.22687 0.12905 1.43445 1.44857 1.55651 2.41897 2.63528 2.96558 3.15563 3.34283 3.45896 3.63151 3.94919 4.00339 4.21179 4.31139 4.40308 4.47153 4.62409 4.75991 4.78470 4.84986 5.02686 5.05083 5.13499 5.14014 5.19945 5.44795 5.47674 5.66427 5.83355 6.20087 6.32090 6.44246 6.75300 6.82251 7.00449 7.42591 8.92618 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.049414 B = 0.004306 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.502076 B = 6501.632509 C = 6711.026451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.073 3.927 3 C 0.039 3.961 4 N -0.454 5.454 5 C 0.034 3.966 6 C 0.085 3.915 7 C -0.053 4.053 8 C 0.078 3.922 9 N -0.684 5.684 10 C 0.214 3.786 11 H -0.032 1.032 12 C -0.114 4.114 13 C -0.537 4.537 14 H 0.064 0.936 15 C 0.011 3.989 16 N -0.920 5.920 17 Si 0.966 3.034 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.466 5.466 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.203 0.797 26 H 0.183 0.817 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.017 0.983 31 H 0.339 0.661 32 H 0.029 0.971 33 H 0.015 0.985 34 H 0.057 0.943 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 12.167 -10.778 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.068 4.068 3 C -0.121 4.121 4 N -0.168 5.168 5 C -0.124 4.124 6 C -0.055 4.055 7 C -0.091 4.091 8 C -0.053 4.053 9 N -0.316 5.316 10 C 0.106 3.894 11 H -0.014 1.014 12 C -0.172 4.172 13 C -0.576 4.576 14 H 0.083 0.917 15 C -0.188 4.188 16 N -0.560 5.560 17 Si 0.791 3.209 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.190 1.190 21 N -0.183 5.183 22 H 0.115 0.885 23 H 0.090 0.910 24 H 0.126 0.874 25 H 0.220 0.780 26 H 0.200 0.800 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.157 0.843 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.026 11.755 -10.604 18.739 hybrid contribution 1.468 -0.045 0.673 1.615 sum -8.558 11.709 -9.931 17.578 Atomic orbital electron populations 1.20812 0.85179 1.04899 1.04618 1.23011 1.00223 0.89099 0.94451 1.24174 0.90468 1.00448 0.97016 1.68461 1.09982 1.29703 1.08617 1.23813 1.02738 0.88021 0.97862 1.22300 0.90604 0.97253 0.95324 1.20393 0.99994 0.91878 0.96884 1.21722 0.97402 0.90432 0.95709 1.60582 1.28897 1.29557 1.12529 1.18923 0.93052 0.92813 0.84629 1.01419 1.21549 0.95963 0.98391 1.01299 1.21598 1.12206 1.30456 0.93310 0.91746 1.25776 1.00213 0.97782 0.94989 1.70035 1.41778 1.46020 0.98133 0.85440 0.79138 0.78506 0.77839 1.20019 1.21020 1.19013 1.68190 1.08881 1.30937 1.10313 0.88474 0.91018 0.87422 0.78015 0.79985 0.87693 0.89641 0.93595 0.96445 0.84332 0.95137 0.96549 0.92424 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.19 71.24 0.73 -0.58 16 2 C 0.07 1.60 6.79 42.55 0.29 1.89 16 3 C 0.04 0.79 10.88 84.68 0.92 1.71 16 4 N -0.45 -11.39 10.50 -195.22 -2.05 -13.44 16 5 C 0.03 0.87 10.90 84.67 0.92 1.79 16 6 C 0.09 2.37 6.04 42.54 0.26 2.63 16 7 C -0.05 -1.49 5.76 29.85 0.17 -1.32 16 8 C 0.08 2.82 5.47 86.30 0.47 3.29 16 9 N -0.68 -29.04 6.30 -495.44 -3.12 -32.16 16 10 C 0.21 11.16 2.60 44.17 0.11 11.27 16 11 H -0.03 -1.83 7.80 -2.39 -0.02 -1.85 16 12 C -0.11 -5.89 9.19 71.98 0.66 -5.23 16 13 C -0.54 -29.58 8.59 25.60 0.22 -29.36 16 14 H 0.06 3.42 7.62 -2.91 -0.02 3.39 16 15 C 0.01 0.64 5.30 84.65 0.45 1.08 16 16 N -0.92 -53.61 11.32 21.44 0.24 -53.37 16 17 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 21 N -0.47 -13.22 10.35 -171.51 -1.77 -15.00 16 22 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.11 0.81 8.09 -2.39 -0.02 0.79 16 25 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 26 H 0.18 3.86 8.06 -2.91 -0.02 3.83 16 27 H 0.10 2.45 8.12 -2.39 -0.02 2.43 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.05 1.84 7.44 -2.39 -0.02 1.82 16 30 H 0.02 0.64 8.06 -2.39 -0.02 0.62 16 31 H 0.34 13.42 8.23 -89.70 -0.74 12.68 16 32 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.02 0.76 7.45 -2.39 -0.02 0.74 16 34 H 0.06 3.25 6.07 -2.38 -0.01 3.23 16 35 H 0.26 14.49 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -66.39 296.90 0.87 -65.52 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.34 Total: 15.89 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.21 Total: -12.81 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -6.70 Total: -113.97 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -66.39 0.87 -65.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594717034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.671 kcal (2) G-P(sol) polarization free energy of solvation -66.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds