Wall clock time and date at job start Sun Mar 29 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34667 * 126.59002 * 2 1 4 4 N 1.34131 * 108.02323 * 180.02562 * 3 2 1 5 5 C 1.30504 * 109.25286 * 359.97438 * 4 3 2 6 6 C 1.50692 * 125.64957 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47323 * 275.02461 * 6 5 4 8 8 C 1.46905 * 111.00092 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46704 * 174.70280 * 8 7 6 10 10 C 1.50698 * 115.55159 * 65.17103 * 9 8 7 11 11 H 1.07997 * 119.99756 * 264.96319 * 10 9 8 12 12 C 1.37877 * 119.99850 * 84.96390 * 10 9 8 13 13 N 1.31511 * 120.00497 * 353.06581 * 12 10 9 14 14 Si 1.86800 * 119.99645 * 173.06535 * 12 10 9 15 15 H 1.48501 * 109.47128 * 60.00239 * 14 12 10 16 16 H 1.48502 * 109.47055 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47424 * 299.99801 * 14 12 10 18 18 C 1.53006 * 117.49947 * 279.49351 * 9 8 7 19 19 C 1.53005 * 117.49223 * 210.83655 * 9 8 7 20 20 N 1.35041 * 108.69805 * 0.26260 * 5 4 3 21 21 H 0.97005 * 126.39316 * 179.73977 * 20 5 4 22 22 H 1.09005 * 109.47117 * 89.98422 * 1 2 3 23 23 H 1.09003 * 109.47539 * 209.97854 * 1 2 3 24 24 H 1.08994 * 109.47723 * 329.98145 * 1 2 3 25 25 H 1.07998 * 125.98966 * 0.03356 * 3 2 1 26 26 H 1.08998 * 109.47470 * 155.02642 * 6 5 4 27 27 H 1.09004 * 109.47588 * 35.02392 * 6 5 4 28 28 H 1.00907 * 111.00064 * 56.04601 * 7 6 5 29 29 H 1.09002 * 109.47277 * 294.70020 * 8 7 6 30 30 H 1.08993 * 109.47088 * 54.70422 * 8 7 6 31 31 H 0.96996 * 120.00517 * 185.04365 * 13 12 10 32 32 H 1.09001 * 117.49513 * 0.02562 * 18 9 8 33 33 H 1.08992 * 117.49366 * 145.02072 * 18 9 8 34 34 H 1.09000 * 117.49548 * 214.97967 * 19 9 8 35 35 H 1.08994 * 117.50322 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6542 -0.0006 5 6 3.5968 -0.6508 -0.0004 6 6 4.8317 -1.5143 -0.0014 7 7 5.3013 -1.6958 -1.3815 8 6 6.5070 -2.5340 -1.4215 9 6 6.8888 -2.8091 -2.8773 10 6 7.3084 -1.6036 -3.6782 11 1 6.5858 -1.0826 -4.2888 12 6 8.6150 -1.1657 -3.6315 13 7 9.4620 -1.7124 -2.7870 14 14 9.1820 0.2043 -4.7678 15 1 8.3837 1.4284 -4.5041 16 1 10.6187 0.4884 -4.5221 17 1 8.9943 -0.2144 -6.1801 18 6 6.1260 -3.9141 -3.6110 19 6 7.5797 -4.1387 -3.1872 20 7 2.3229 -1.0990 -0.0055 21 1 2.0392 -2.0266 -0.0101 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3634 0.8897 0.5141 25 1 1.9863 2.1117 0.0005 26 1 4.5961 -2.4859 0.4328 27 1 5.6124 -1.0328 0.5876 28 1 5.4651 -0.8057 -1.8277 29 1 7.3263 -2.0161 -0.9227 30 1 6.3105 -3.4777 -0.9128 31 1 10.3603 -1.3563 -2.7020 32 1 5.3519 -4.4447 -3.0565 33 1 5.9280 -3.7691 -4.6729 34 1 8.3375 -4.1414 -3.9707 35 1 7.7627 -4.8170 -2.3540 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594938109.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:58 Heat of formation + Delta-G solvation = 73.528479 kcal Electronic energy + Delta-G solvation = -16152.446482 eV Core-core repulsion = 13572.755278 eV Total energy + Delta-G solvation = -2579.691205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88200 -36.96818 -34.51641 -32.58730 -31.88036 -31.47560 -28.01436 -25.63381 -24.82823 -22.93607 -20.98042 -20.93258 -20.19554 -19.06451 -17.22812 -15.90051 -15.26969 -14.83280 -14.59253 -14.12574 -13.80984 -13.68792 -13.51260 -12.88816 -12.73209 -12.60733 -12.44682 -11.62026 -11.38583 -11.20835 -10.90603 -10.82565 -10.41821 -10.12096 -9.81577 -9.76956 -9.42913 -8.73679 -8.39538 -8.22574 -7.95597 -7.54625 -5.98656 -4.04643 2.14736 3.21632 3.32073 3.35274 3.39431 3.43101 4.44898 4.63412 4.93905 5.03704 5.14562 5.29719 5.35231 5.40495 5.54203 5.63280 5.71004 5.86326 6.02105 6.17717 6.37914 6.46421 6.57316 6.82341 6.83132 6.90314 6.92492 7.18092 7.50505 7.53104 7.56322 7.92520 7.93004 8.21243 8.31752 8.52848 8.98110 9.61365 11.09283 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027501 B = 0.005930 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.896024 B = 4720.618355 C = 5245.915661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.026 4.026 4 N -0.487 5.487 5 C 0.230 3.770 6 C 0.138 3.862 7 N -0.677 5.677 8 C 0.105 3.895 9 C 0.051 3.949 10 C -0.494 4.494 11 H 0.059 0.941 12 C 0.072 3.928 13 N -0.881 5.881 14 Si 0.888 3.112 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.201 4.201 19 C -0.161 4.161 20 N -0.557 5.557 21 H 0.417 0.583 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.165 0.835 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.357 0.643 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 0.006 6.709 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.155 4.155 3 C -0.175 4.175 4 N -0.207 5.207 5 C -0.035 4.035 6 C 0.007 3.993 7 N -0.311 5.311 8 C -0.023 4.023 9 C 0.050 3.950 10 C -0.532 4.532 11 H 0.077 0.923 12 C -0.131 4.131 13 N -0.517 5.517 14 Si 0.715 3.285 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.238 4.238 19 C -0.199 4.199 20 N -0.160 5.160 21 H 0.254 0.746 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.183 0.817 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.177 0.823 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.377 0.010 6.608 14.920 hybrid contribution 0.217 0.409 -0.279 0.540 sum -13.160 0.419 6.329 14.609 Atomic orbital electron populations 1.20162 0.87439 1.02933 1.02568 1.21210 0.94262 0.87415 1.12620 1.22071 0.88519 0.98381 1.08503 1.70268 1.22310 1.08417 1.19680 1.23253 0.85735 0.90806 1.03676 1.20215 0.89766 0.95707 0.93598 1.60558 1.35965 1.22173 1.12377 1.21476 0.88650 0.94226 0.97959 1.18712 0.96666 0.88779 0.90815 1.20411 0.93979 1.11820 1.27019 0.92277 1.24982 0.96526 0.96320 0.95303 1.69968 1.06203 1.40401 1.35173 0.86730 0.77574 0.82541 0.81616 1.20152 1.21393 1.20273 1.22870 0.93944 1.07322 0.99714 1.22533 0.93665 1.01895 1.01792 1.43111 1.06969 1.09193 1.56720 0.74590 0.91089 0.92027 0.90223 0.81745 0.90474 0.92512 0.82347 0.94169 0.94350 0.93037 0.91810 0.90926 0.90292 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.44 36.00 0.38 -0.21 16 2 C -0.04 -0.49 7.24 -81.61 -0.59 -1.08 16 3 C -0.03 -0.39 11.79 -17.81 -0.21 -0.60 16 4 N -0.49 -8.74 11.25 -10.82 -0.12 -8.86 16 5 C 0.23 3.74 7.67 -155.42 -1.19 2.55 16 6 C 0.14 2.28 6.30 -4.98 -0.03 2.25 16 7 N -0.68 -13.46 6.46 -115.05 -0.74 -14.21 16 8 C 0.11 2.33 5.54 -3.82 -0.02 2.30 16 9 C 0.05 1.25 1.56 -155.65 -0.24 1.01 16 10 C -0.49 -13.41 8.32 -34.44 -0.29 -13.70 16 11 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 12 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 13 N -0.88 -24.86 12.95 55.43 0.72 -24.14 16 14 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 C -0.20 -4.49 9.96 -26.69 -0.27 -4.75 16 19 C -0.16 -3.80 9.46 -26.69 -0.25 -4.05 16 20 N -0.56 -7.29 6.15 -6.54 -0.04 -7.33 16 21 H 0.42 4.25 8.96 -40.82 -0.37 3.88 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.36 7.92 8.29 -39.29 -0.33 7.59 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 302.29 15.07 4.56 4.56 Total: -1.00 -30.34 302.29 -8.77 -39.11 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.31 Total: 8.93 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.81 Total: -14.41 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.19 Total: -54.54 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.34 -8.77 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594938109.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.640 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds