Wall clock time and date at job start Sun Mar 29 2020 21:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34667 * 126.59002 * 2 1 4 4 N 1.34131 * 108.02323 * 180.02562 * 3 2 1 5 5 C 1.30504 * 109.25286 * 359.97438 * 4 3 2 6 6 C 1.50692 * 125.64957 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47323 * 275.02461 * 6 5 4 8 8 C 1.46905 * 111.00092 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46704 * 174.70280 * 8 7 6 10 10 C 1.50698 * 115.55159 * 65.17103 * 9 8 7 11 11 H 1.07997 * 119.99756 * 264.96319 * 10 9 8 12 12 C 1.37877 * 119.99850 * 84.96390 * 10 9 8 13 13 N 1.31511 * 120.00497 * 353.06581 * 12 10 9 14 14 Si 1.86800 * 119.99645 * 173.06535 * 12 10 9 15 15 H 1.48501 * 109.47128 * 60.00239 * 14 12 10 16 16 H 1.48502 * 109.47055 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47424 * 299.99801 * 14 12 10 18 18 C 1.53006 * 117.49947 * 279.49351 * 9 8 7 19 19 C 1.53005 * 117.49223 * 210.83655 * 9 8 7 20 20 N 1.35041 * 108.69805 * 0.26260 * 5 4 3 21 21 H 0.97005 * 126.39316 * 179.73977 * 20 5 4 22 22 H 1.09005 * 109.47117 * 89.98422 * 1 2 3 23 23 H 1.09003 * 109.47539 * 209.97854 * 1 2 3 24 24 H 1.08994 * 109.47723 * 329.98145 * 1 2 3 25 25 H 1.07998 * 125.98966 * 0.03356 * 3 2 1 26 26 H 1.08998 * 109.47470 * 155.02642 * 6 5 4 27 27 H 1.09004 * 109.47588 * 35.02392 * 6 5 4 28 28 H 1.00907 * 111.00064 * 56.04601 * 7 6 5 29 29 H 1.09002 * 109.47277 * 294.70020 * 8 7 6 30 30 H 1.08993 * 109.47088 * 54.70422 * 8 7 6 31 31 H 0.96996 * 120.00517 * 185.04365 * 13 12 10 32 32 H 1.09001 * 117.49513 * 0.02562 * 18 9 8 33 33 H 1.08992 * 117.49366 * 145.02072 * 18 9 8 34 34 H 1.09000 * 117.49548 * 214.97967 * 19 9 8 35 35 H 1.08994 * 117.50322 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6542 -0.0006 5 6 3.5968 -0.6508 -0.0004 6 6 4.8317 -1.5143 -0.0014 7 7 5.3013 -1.6958 -1.3815 8 6 6.5070 -2.5340 -1.4215 9 6 6.8888 -2.8091 -2.8773 10 6 7.3084 -1.6036 -3.6782 11 1 6.5858 -1.0826 -4.2888 12 6 8.6150 -1.1657 -3.6315 13 7 9.4620 -1.7124 -2.7870 14 14 9.1820 0.2043 -4.7678 15 1 8.3837 1.4284 -4.5041 16 1 10.6187 0.4884 -4.5221 17 1 8.9943 -0.2144 -6.1801 18 6 6.1260 -3.9141 -3.6110 19 6 7.5797 -4.1387 -3.1872 20 7 2.3229 -1.0990 -0.0055 21 1 2.0392 -2.0266 -0.0101 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3634 0.8897 0.5141 25 1 1.9863 2.1117 0.0005 26 1 4.5961 -2.4859 0.4328 27 1 5.6124 -1.0328 0.5876 28 1 5.4651 -0.8057 -1.8277 29 1 7.3263 -2.0161 -0.9227 30 1 6.3105 -3.4777 -0.9128 31 1 10.3603 -1.3563 -2.7020 32 1 5.3519 -4.4447 -3.0565 33 1 5.9280 -3.7691 -4.6729 34 1 8.3375 -4.1414 -3.9707 35 1 7.7627 -4.8170 -2.3540 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594938109.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:57 Heat of formation + Delta-G solvation = 53.402861 kcal Electronic energy + Delta-G solvation = -16153.319195 eV Core-core repulsion = 13572.755278 eV Total energy + Delta-G solvation = -2580.563917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.98238 -38.76585 -36.05623 -33.95858 -33.67999 -32.51126 -29.28685 -27.54077 -26.20397 -24.41924 -22.80089 -22.03845 -21.37055 -20.92982 -18.43538 -17.82994 -16.64028 -16.48714 -16.20655 -15.77523 -15.14057 -14.99467 -14.76830 -14.38672 -13.94284 -13.53329 -13.30999 -13.19340 -13.09107 -12.88840 -12.83595 -12.73870 -12.32638 -11.97663 -11.32755 -10.95803 -10.91798 -10.72042 -10.39806 -9.96240 -9.29733 -9.05395 -8.08026 -6.18313 1.07237 1.41978 1.42377 1.49431 2.11150 2.23899 2.43733 3.20005 3.33506 3.60143 3.86124 4.05699 4.20284 4.33936 4.42372 4.46041 4.63456 4.67174 4.74604 4.82790 4.89651 4.99962 5.04520 5.09038 5.13932 5.31173 5.38617 5.68921 5.69374 5.80679 5.85723 6.26049 6.47206 6.48609 6.56045 6.89103 7.18565 7.49563 8.98949 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027501 B = 0.005930 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.896024 B = 4720.618355 C = 5245.915661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.016 4.016 3 C -0.062 4.062 4 N -0.529 5.529 5 C 0.205 3.795 6 C 0.144 3.856 7 N -0.673 5.673 8 C 0.120 3.880 9 C 0.022 3.978 10 C -0.505 4.505 11 H 0.046 0.954 12 C 0.029 3.971 13 N -0.905 5.905 14 Si 0.942 3.058 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.178 4.178 19 C -0.164 4.164 20 N -0.546 5.546 21 H 0.431 0.569 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.181 0.819 26 H 0.106 0.894 27 H 0.045 0.955 28 H 0.340 0.660 29 H 0.007 0.993 30 H 0.060 0.940 31 H 0.259 0.741 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.092 -0.498 6.995 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.133 4.133 3 C -0.210 4.210 4 N -0.249 5.249 5 C -0.059 4.059 6 C 0.013 3.987 7 N -0.304 5.304 8 C -0.009 4.009 9 C 0.022 3.978 10 C -0.543 4.543 11 H 0.065 0.935 12 C -0.172 4.172 13 N -0.543 5.543 14 Si 0.768 3.232 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.215 4.215 19 C -0.202 4.202 20 N -0.150 5.150 21 H 0.271 0.729 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.116 0.884 25 H 0.198 0.802 26 H 0.124 0.876 27 H 0.063 0.937 28 H 0.157 0.843 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.601 -0.520 6.895 17.065 hybrid contribution 0.797 0.580 -0.357 1.048 sum -14.805 0.059 6.538 16.184 Atomic orbital electron populations 1.20343 0.83892 1.04846 1.03779 1.21885 0.96123 0.86329 1.08985 1.22520 0.88004 1.00115 1.10350 1.70168 1.24520 1.09684 1.20569 1.22988 0.86647 0.90516 1.05784 1.20205 0.89778 0.97252 0.91462 1.60554 1.34415 1.20903 1.14510 1.21215 0.88469 0.95061 0.96172 1.18877 0.98341 0.88428 0.92197 1.20627 0.93911 1.12719 1.27021 0.93534 1.25589 0.96728 0.98396 0.96457 1.70060 1.06292 1.41585 1.36392 0.85868 0.77116 0.80154 0.80017 1.20129 1.21047 1.19909 1.22847 0.93612 1.05469 0.99543 1.22456 0.94065 1.01957 1.01740 1.43074 1.06031 1.10244 1.55670 0.72857 0.90036 0.90042 0.88441 0.80151 0.87625 0.93730 0.84306 0.97454 0.92179 0.93216 0.89170 0.91347 0.92708 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.44 71.23 0.74 -0.13 16 2 C -0.02 -0.36 7.24 40.95 0.30 -0.07 16 3 C -0.06 -1.78 11.79 83.52 0.98 -0.80 16 4 N -0.53 -18.99 11.25 -188.14 -2.12 -21.11 16 5 C 0.21 6.52 7.67 138.13 1.06 7.58 16 6 C 0.14 4.64 6.30 85.55 0.54 5.18 16 7 N -0.67 -26.52 6.46 -517.92 -3.35 -29.87 16 8 C 0.12 5.25 5.54 86.30 0.48 5.73 16 9 C 0.02 1.09 1.56 -52.92 -0.08 1.00 16 10 C -0.50 -27.71 8.32 25.60 0.21 -27.50 16 11 H 0.05 2.61 7.82 -2.91 -0.02 2.58 16 12 C 0.03 1.59 5.39 84.66 0.46 2.05 16 13 N -0.91 -51.93 12.95 21.45 0.28 -51.65 16 14 Si 0.94 44.43 29.55 68.60 2.03 46.45 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 17 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 18 C -0.18 -7.63 9.96 30.62 0.30 -7.33 16 19 C -0.16 -7.67 9.46 30.62 0.29 -7.38 16 20 N -0.55 -13.10 6.15 -174.62 -1.07 -14.18 16 21 H 0.43 7.53 8.96 -92.70 -0.83 6.70 16 22 H 0.08 0.92 8.14 -2.38 -0.02 0.91 16 23 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 25 H 0.18 4.22 8.06 -2.91 -0.02 4.19 16 26 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.34 15.37 8.29 -89.69 -0.74 14.63 16 29 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 31 H 0.26 14.32 8.32 -92.71 -0.77 13.54 16 32 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.05 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -65.77 302.29 0.57 -65.20 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.49 Total: 26.81 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 5.28 Total: -21.66 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -6.26 Total: -116.80 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.77 0.57 -65.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594938109.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.605 kcal (2) G-P(sol) polarization free energy of solvation -65.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds