Wall clock time and date at job start Sun Mar 29 2020 22:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46789 * 2 1 4 4 C 1.36932 * 119.99843 * 89.54841 * 3 2 1 5 5 H 1.07999 * 120.00248 * 33.69461 * 4 3 2 6 6 C 1.38814 * 119.99747 * 213.96789 * 4 3 2 7 7 N 1.31621 * 120.00045 * 22.98429 * 6 4 3 8 8 Si 1.86800 * 120.00111 * 202.98098 * 6 4 3 9 9 H 1.48501 * 109.46965 * 60.00416 * 8 6 4 10 10 H 1.48499 * 109.47081 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47318 * 300.00643 * 8 6 4 12 12 C 1.46498 * 119.99734 * 269.54352 * 3 2 1 13 13 C 1.50696 * 109.47441 * 270.00155 * 12 3 2 14 14 C 1.38615 * 120.44842 * 94.99987 * 13 12 3 15 15 C 1.38582 * 118.40215 * 180.02562 * 14 13 12 16 16 C 1.50703 * 120.44843 * 179.97438 * 15 14 13 17 17 N 1.32350 * 119.10233 * 0.02562 * 15 14 13 18 18 C 1.31778 * 120.81801 * 359.97438 * 17 15 14 19 19 C 1.50701 * 119.11830 * 179.97438 * 18 17 15 20 20 N 1.31814 * 121.75663 * 359.72083 * 18 17 15 21 21 H 1.08997 * 109.47418 * 60.00148 * 1 2 3 22 22 H 1.09008 * 109.46910 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47151 * 299.99701 * 1 2 3 24 24 H 1.08989 * 109.47141 * 239.99880 * 2 1 3 25 25 H 1.08997 * 109.47418 * 119.99852 * 2 1 3 26 26 H 0.96996 * 119.99945 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46998 * 30.00555 * 12 3 2 28 28 H 1.09007 * 109.46719 * 150.00244 * 12 3 2 29 29 H 1.07997 * 120.80089 * 0.02663 * 14 13 12 30 30 H 1.08996 * 109.47013 * 89.99772 * 16 15 14 31 31 H 1.09003 * 109.46816 * 210.00196 * 16 15 14 32 32 H 1.09003 * 109.46989 * 329.99731 * 16 15 14 33 33 H 1.08994 * 109.47289 * 90.00623 * 19 18 17 34 34 H 1.09006 * 109.47205 * 210.00306 * 19 18 17 35 35 H 1.08999 * 109.47343 * 329.99924 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2376 2.0299 1.1858 5 1 2.5858 1.4784 2.0467 6 6 2.0070 3.3953 1.2831 7 7 1.1822 3.9848 0.4437 8 14 2.8672 4.3960 2.6053 9 1 4.3377 4.2925 2.4262 10 1 2.4547 5.8184 2.4963 11 1 2.4935 3.8728 3.9438 12 6 2.2719 2.0685 -1.2687 13 6 3.6983 1.8306 -1.6925 14 6 4.0083 0.8038 -2.5705 15 6 5.3341 0.6228 -2.9314 16 6 5.7230 -0.4797 -3.8824 17 7 6.2541 1.4306 -2.4287 18 6 5.9222 2.3966 -1.5962 19 6 7.0010 3.2938 -1.0464 20 7 4.6712 2.6022 -1.2353 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.0208 4.9388 0.5119 27 1 1.5967 1.6823 -2.0324 28 1 2.1039 3.1381 -1.1424 29 1 3.2354 0.1603 -2.9639 30 1 5.6879 -0.1060 -4.9057 31 1 6.7337 -0.8174 -3.6532 32 1 5.0286 -1.3132 -3.7759 33 1 7.1332 4.1503 -1.7074 34 1 6.7136 3.6417 -0.0541 35 1 7.9365 2.7384 -0.9797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595301841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:10 Heat of formation + Delta-G solvation = 56.506014 kcal Electronic energy + Delta-G solvation = -16850.274824 eV Core-core repulsion = 14269.845469 eV Total energy + Delta-G solvation = -2580.429354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40243 -36.16363 -33.90865 -32.92637 -31.82603 -29.15527 -28.81978 -27.74226 -26.04110 -23.69937 -21.68370 -21.44400 -19.93870 -16.95630 -16.80311 -15.12087 -14.85754 -14.70854 -14.48003 -13.95884 -13.74115 -13.15187 -12.97611 -12.63785 -12.41896 -12.17054 -11.98024 -11.86049 -11.62074 -11.18390 -11.09324 -10.65945 -10.50209 -10.25856 -10.14213 -10.06064 -9.84632 -9.52094 -8.68646 -8.50284 -8.46517 -6.70656 -5.81859 -3.33270 1.55904 1.78779 3.42124 3.47429 3.53602 4.32130 4.41675 4.54674 4.75673 5.02517 5.39230 5.44944 5.53477 5.63782 5.69504 5.79794 5.86157 5.90128 5.95508 6.04198 6.08785 6.26627 6.34926 6.42154 6.56478 6.57792 6.68896 6.91508 7.14008 7.21734 7.55537 7.79745 7.83063 8.45568 8.91044 9.11577 9.77595 10.29846 11.19930 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.010361 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.400653 B = 2701.733818 C = 3747.776466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 N -0.569 5.569 4 C -0.256 4.256 5 H 0.060 0.940 6 C 0.023 3.977 7 N -0.881 5.881 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.284 1.284 12 C 0.177 3.823 13 C 0.188 3.812 14 C -0.242 4.242 15 C 0.159 3.841 16 C -0.099 4.099 17 N -0.544 5.544 18 C 0.307 3.693 19 C -0.080 4.080 20 N -0.495 5.495 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.056 0.944 24 H 0.033 0.967 25 H 0.042 0.958 26 H 0.257 0.743 27 H 0.046 0.954 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -5.693 -6.602 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 N -0.288 5.288 4 C -0.386 4.386 5 H 0.078 0.922 6 C -0.178 4.178 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.210 1.210 12 C 0.049 3.951 13 C 0.040 3.960 14 C -0.266 4.266 15 C 0.014 3.986 16 C -0.156 4.156 17 N -0.262 5.262 18 C 0.040 3.960 19 C -0.138 4.138 20 N -0.211 5.211 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.139 0.861 29 H 0.151 0.849 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.203 -4.941 -6.224 10.081 hybrid contribution -0.217 -0.072 0.302 0.379 sum 5.986 -5.013 -5.922 9.800 Atomic orbital electron populations 1.22247 0.99155 0.98526 1.02134 1.20906 0.92326 0.86905 0.98291 1.43719 1.73011 1.10303 1.01783 1.18928 1.38775 0.91430 0.89439 0.92235 1.24975 0.96584 0.98219 0.97997 1.69915 1.32823 1.10549 1.39039 0.86427 0.80518 0.79012 0.81164 1.20507 1.21620 1.21048 1.20140 0.83882 1.04067 0.86978 1.23572 0.99320 0.87295 0.85858 1.22579 0.97543 1.02713 1.03728 1.21507 0.89608 0.93880 0.93642 1.20665 1.02680 0.95001 0.97254 1.67953 1.38299 1.06767 1.13201 1.23209 0.91830 0.91189 0.89819 1.20457 0.94575 0.97179 1.01609 1.68307 0.99875 1.28956 1.23945 0.93656 0.94916 0.92456 0.94883 0.93937 0.93349 0.93574 0.86139 0.84900 0.90502 0.90658 0.90721 0.90398 0.89836 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 10.24 37.16 0.38 -2.73 16 2 C 0.14 2.95 6.39 -4.04 -0.03 2.92 16 3 N -0.57 -14.01 2.43 -174.61 -0.43 -14.44 16 4 C -0.26 -7.01 9.48 -15.06 -0.14 -7.15 16 5 H 0.06 1.65 7.93 -52.49 -0.42 1.24 16 6 C 0.02 0.64 4.95 -17.43 -0.09 0.55 16 7 N -0.88 -24.95 11.31 55.49 0.63 -24.32 16 8 Si 0.90 22.11 29.61 -169.99 -5.03 17.08 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.18 4.16 5.65 -5.20 -0.03 4.13 16 13 C 0.19 4.14 6.41 -82.25 -0.53 3.62 16 14 C -0.24 -4.47 9.52 -39.32 -0.37 -4.84 16 15 C 0.16 2.74 6.82 -82.24 -0.56 2.18 16 16 C -0.10 -1.20 10.22 36.01 0.37 -0.83 16 17 N -0.54 -10.32 10.27 -6.99 -0.07 -10.39 16 18 C 0.31 6.19 7.64 -157.19 -1.20 4.99 16 19 C -0.08 -1.28 10.32 36.01 0.37 -0.90 16 20 N -0.50 -11.40 10.27 -6.99 -0.07 -11.47 16 21 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.03 0.62 8.07 -51.94 -0.42 0.20 16 25 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.05 0.99 7.99 -51.93 -0.42 0.57 16 28 H 0.12 3.25 5.31 -51.92 -0.28 2.98 16 29 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -30.54 299.82 -7.59 -38.13 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.30 Total: -1.04 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.83 Total: 1.93 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.06 Total: -60.62 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.54 -7.59 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595301841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.635 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds