Wall clock time and date at job start Sun Mar 29 2020 22:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46789 * 2 1 4 4 C 1.36932 * 119.99843 * 89.54841 * 3 2 1 5 5 H 1.07999 * 120.00248 * 33.69461 * 4 3 2 6 6 C 1.38814 * 119.99747 * 213.96789 * 4 3 2 7 7 N 1.31621 * 120.00045 * 22.98429 * 6 4 3 8 8 Si 1.86800 * 120.00111 * 202.98098 * 6 4 3 9 9 H 1.48501 * 109.46965 * 60.00416 * 8 6 4 10 10 H 1.48499 * 109.47081 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47318 * 300.00643 * 8 6 4 12 12 C 1.46498 * 119.99734 * 269.54352 * 3 2 1 13 13 C 1.50696 * 109.47441 * 270.00155 * 12 3 2 14 14 C 1.38615 * 120.44842 * 94.99987 * 13 12 3 15 15 C 1.38582 * 118.40215 * 180.02562 * 14 13 12 16 16 C 1.50703 * 120.44843 * 179.97438 * 15 14 13 17 17 N 1.32350 * 119.10233 * 0.02562 * 15 14 13 18 18 C 1.31778 * 120.81801 * 359.97438 * 17 15 14 19 19 C 1.50701 * 119.11830 * 179.97438 * 18 17 15 20 20 N 1.31814 * 121.75663 * 359.72083 * 18 17 15 21 21 H 1.08997 * 109.47418 * 60.00148 * 1 2 3 22 22 H 1.09008 * 109.46910 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47151 * 299.99701 * 1 2 3 24 24 H 1.08989 * 109.47141 * 239.99880 * 2 1 3 25 25 H 1.08997 * 109.47418 * 119.99852 * 2 1 3 26 26 H 0.96996 * 119.99945 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46998 * 30.00555 * 12 3 2 28 28 H 1.09007 * 109.46719 * 150.00244 * 12 3 2 29 29 H 1.07997 * 120.80089 * 0.02663 * 14 13 12 30 30 H 1.08996 * 109.47013 * 89.99772 * 16 15 14 31 31 H 1.09003 * 109.46816 * 210.00196 * 16 15 14 32 32 H 1.09003 * 109.46989 * 329.99731 * 16 15 14 33 33 H 1.08994 * 109.47289 * 90.00623 * 19 18 17 34 34 H 1.09006 * 109.47205 * 210.00306 * 19 18 17 35 35 H 1.08999 * 109.47343 * 329.99924 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2376 2.0299 1.1858 5 1 2.5858 1.4784 2.0467 6 6 2.0070 3.3953 1.2831 7 7 1.1822 3.9848 0.4437 8 14 2.8672 4.3960 2.6053 9 1 4.3377 4.2925 2.4262 10 1 2.4547 5.8184 2.4963 11 1 2.4935 3.8728 3.9438 12 6 2.2719 2.0685 -1.2687 13 6 3.6983 1.8306 -1.6925 14 6 4.0083 0.8038 -2.5705 15 6 5.3341 0.6228 -2.9314 16 6 5.7230 -0.4797 -3.8824 17 7 6.2541 1.4306 -2.4287 18 6 5.9222 2.3966 -1.5962 19 6 7.0010 3.2938 -1.0464 20 7 4.6712 2.6022 -1.2353 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.0208 4.9388 0.5119 27 1 1.5967 1.6823 -2.0324 28 1 2.1039 3.1381 -1.1424 29 1 3.2354 0.1603 -2.9639 30 1 5.6879 -0.1060 -4.9057 31 1 6.7337 -0.8174 -3.6532 32 1 5.0286 -1.3132 -3.7759 33 1 7.1332 4.1503 -1.7074 34 1 6.7136 3.6417 -0.0541 35 1 7.9365 2.7384 -0.9797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595301841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:10 Heat of formation + Delta-G solvation = 38.428408 kcal Electronic energy + Delta-G solvation = -16851.058728 eV Core-core repulsion = 14269.845469 eV Total energy + Delta-G solvation = -2581.213258 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89120 -37.95915 -35.30050 -34.47101 -33.76513 -30.86385 -30.01902 -29.27148 -27.72088 -25.54075 -23.14382 -22.94989 -21.68122 -18.78056 -18.44122 -16.76324 -16.49732 -16.33559 -15.98138 -15.66295 -15.53465 -14.60665 -14.19589 -14.06705 -13.94619 -13.50388 -13.28284 -13.16791 -13.09264 -12.97543 -12.86187 -12.49766 -12.35446 -12.08608 -11.97719 -11.64131 -11.56105 -11.09743 -10.53424 -10.12556 -10.02697 -8.66886 -7.86278 -5.41356 0.09097 0.29786 1.42377 1.48137 1.53879 2.50668 2.85447 3.11252 3.23987 3.35782 3.68418 3.82286 4.17839 4.34134 4.41188 4.48379 4.59063 4.64862 4.67053 4.77396 4.79234 4.83819 4.84659 4.99103 5.07052 5.14249 5.19575 5.28452 5.52997 5.59467 5.70476 5.76924 6.31147 6.45667 7.11930 7.39337 7.82008 8.30040 9.11415 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.010361 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.400653 B = 2701.733818 C = 3747.776466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.137 3.863 3 N -0.584 5.584 4 C -0.263 4.263 5 H 0.048 0.952 6 C -0.017 4.017 7 N -0.906 5.906 8 Si 0.946 3.054 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.182 3.818 13 C 0.166 3.834 14 C -0.239 4.239 15 C 0.160 3.840 16 C -0.094 4.094 17 N -0.547 5.547 18 C 0.291 3.709 19 C -0.076 4.076 20 N -0.540 5.540 21 H 0.039 0.961 22 H 0.070 0.930 23 H 0.027 0.973 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.252 0.748 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.163 0.837 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.650 -7.538 -7.970 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.012 3.988 3 N -0.305 5.305 4 C -0.393 4.393 5 H 0.065 0.935 6 C -0.216 4.216 7 N -0.549 5.549 8 Si 0.774 3.226 9 H -0.212 1.212 10 H -0.216 1.216 11 H -0.202 1.202 12 C 0.055 3.945 13 C 0.018 3.982 14 C -0.262 4.262 15 C 0.014 3.986 16 C -0.151 4.151 17 N -0.264 5.264 18 C 0.024 3.976 19 C -0.134 4.134 20 N -0.257 5.257 21 H 0.058 0.942 22 H 0.089 0.911 23 H 0.046 0.954 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.180 0.820 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.241 -6.805 -7.593 12.506 hybrid contribution -0.476 0.409 0.621 0.883 sum 6.765 -6.396 -6.972 11.631 Atomic orbital electron populations 1.22100 0.98024 1.00394 1.00334 1.21061 0.93169 0.85185 0.99359 1.43877 1.73927 1.11405 1.01257 1.19004 1.38195 0.91808 0.90314 0.93469 1.25487 0.97323 0.98993 0.99759 1.70020 1.34164 1.10202 1.40516 0.85691 0.79122 0.77935 0.79816 1.21183 1.21577 1.20237 1.19892 0.85681 1.01886 0.87039 1.23330 0.98271 0.88897 0.87701 1.22801 0.99088 1.01742 1.02568 1.22383 0.88938 0.94080 0.93154 1.20818 1.03693 0.93794 0.96766 1.68108 1.38665 1.06702 1.12951 1.23834 0.91668 0.92055 0.90057 1.20544 0.94301 0.97518 1.01085 1.68234 1.01270 1.30519 1.25640 0.94202 0.91127 0.95418 0.92235 0.94292 0.93890 0.91983 0.89877 0.81976 0.88331 0.89885 0.88270 0.88620 0.91044 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.24 71.98 0.74 -4.83 16 2 C 0.14 5.54 6.39 86.38 0.55 6.09 16 3 N -0.58 -28.93 2.43 -706.36 -1.72 -30.65 16 4 C -0.26 -14.68 9.48 84.03 0.80 -13.89 16 5 H 0.05 2.69 7.93 -2.91 -0.02 2.67 16 6 C -0.02 -0.98 4.95 84.86 0.42 -0.56 16 7 N -0.91 -52.86 11.31 21.65 0.24 -52.62 16 8 Si 0.95 46.48 29.61 68.60 2.03 48.51 16 9 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 10 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.18 8.65 5.65 85.63 0.48 9.13 16 13 C 0.17 7.21 6.41 42.57 0.27 7.49 16 14 C -0.24 -8.25 9.52 22.44 0.21 -8.03 16 15 C 0.16 5.04 6.82 42.56 0.29 5.34 16 16 C -0.09 -1.85 10.22 71.24 0.73 -1.12 16 17 N -0.55 -19.56 10.27 -176.02 -1.81 -21.37 16 18 C 0.29 11.51 7.64 138.75 1.06 12.57 16 19 C -0.08 -2.37 10.32 71.24 0.74 -1.63 16 20 N -0.54 -25.02 10.27 -176.02 -1.81 -26.83 16 21 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 23 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 25 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 26 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.06 2.63 7.99 -2.39 -0.02 2.62 16 28 H 0.08 4.65 5.31 -2.38 -0.01 4.63 16 29 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.10 1.52 8.10 -2.39 -0.02 1.50 16 33 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -67.58 299.82 4.29 -63.29 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.06 Total: 9.10 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 6.29 Total: 10.56 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -5.09 Total: -131.46 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -67.58 4.29 -63.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595301841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.719 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds