Wall clock time and date at job start Sun Mar 29 2020 22:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48492 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46866 * 300.00284 * 3 2 1 6 6 H 1.48502 * 109.46912 * 60.00037 * 3 2 1 7 7 C 1.38811 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99347 * 200.96239 * 7 2 1 9 9 N 1.36933 * 120.00221 * 20.97156 * 7 2 1 10 10 C 1.46494 * 120.00337 * 37.42054 * 9 7 2 11 11 C 1.52998 * 109.47150 * 90.00108 * 10 9 7 12 12 C 1.54633 * 111.03863 * 287.02362 * 11 10 9 13 13 C 1.51103 * 104.72683 * 217.33449 * 12 11 10 14 14 C 1.30526 * 111.10388 * 16.43603 * 13 12 11 15 15 C 1.51104 * 111.10610 * 0.02562 * 14 13 12 16 16 C 1.46502 * 119.99577 * 217.70095 * 9 7 2 17 17 C 1.54265 * 110.03369 * 61.15148 * 16 9 7 18 18 C 1.54967 * 104.15590 * 217.13276 * 17 16 9 19 19 C 1.54887 * 102.77757 * 37.89417 * 18 17 16 20 20 C 1.53873 * 110.03155 * 303.93165 * 16 9 7 21 21 H 0.97000 * 120.00322 * 354.92937 * 1 2 3 22 22 H 1.09007 * 109.47441 * 210.00649 * 10 9 7 23 23 H 1.09002 * 109.47092 * 330.00292 * 10 9 7 24 24 H 1.09003 * 110.91234 * 51.03662 * 11 10 9 25 25 H 1.09001 * 110.38734 * 336.14467 * 12 11 10 26 26 H 1.09004 * 110.38640 * 98.52062 * 12 11 10 27 27 H 1.07999 * 124.44443 * 196.46163 * 13 12 11 28 28 H 1.07998 * 124.44708 * 180.02562 * 14 13 12 29 29 H 1.08994 * 110.38766 * 224.75064 * 15 14 13 30 30 H 1.09004 * 110.38781 * 102.36911 * 15 14 13 31 31 H 1.09007 * 110.01637 * 182.54308 * 16 9 7 32 32 H 1.08996 * 110.48563 * 335.78096 * 17 16 9 33 33 H 1.09001 * 110.48858 * 98.43052 * 17 16 9 34 34 H 1.09001 * 110.72310 * 279.57222 * 18 17 16 35 35 H 1.09008 * 110.91861 * 156.29313 * 18 17 16 36 36 H 1.09010 * 110.48360 * 203.40605 * 19 18 17 37 37 H 1.08994 * 110.60497 * 80.81289 * 19 18 17 38 38 H 1.09005 * 110.03164 * 238.57355 * 20 16 9 39 39 H 1.09002 * 110.03321 * 0.02562 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0366 -1.2332 0.3341 9 7 1.3936 -2.3486 -0.4255 10 6 0.4590 -2.3031 -1.5527 11 6 1.2227 -2.5346 -2.8580 12 6 2.0695 -1.2963 -3.2329 13 6 1.9729 -1.2062 -4.7382 14 6 0.9828 -1.9272 -5.1895 15 6 0.2536 -2.6178 -4.0605 16 6 1.6639 -3.6196 0.2511 17 6 1.2381 -3.5314 1.7312 18 6 2.3184 -4.3469 2.4857 19 6 3.6160 -3.9871 1.7201 20 6 3.1750 -3.9096 0.2439 21 1 -0.4850 0.8367 0.0742 22 1 -0.2958 -3.0800 -1.4305 23 1 -0.0258 -1.3273 -1.5835 24 1 1.8431 -3.4285 -2.7925 25 1 1.6558 -0.3996 -2.7716 26 1 3.1060 -1.4382 -2.9267 27 1 2.6362 -0.6224 -5.3590 28 1 0.7193 -2.0182 -6.2329 29 1 0.0556 -3.6585 -4.3168 30 1 -0.6774 -2.0974 -3.8353 31 1 1.1261 -4.4279 -0.2446 32 1 1.2391 -2.4945 2.0673 33 1 0.2540 -3.9782 1.8724 34 1 2.1130 -5.4152 2.4172 35 1 2.3854 -4.0339 3.5277 36 1 4.3663 -4.7666 1.8537 37 1 4.0036 -3.0246 2.0535 38 1 3.3706 -4.8591 -0.2546 39 1 3.7073 -3.1045 -0.2627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595329429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:15 Heat of formation + Delta-G solvation = 20.910598 kcal Electronic energy + Delta-G solvation = -17631.273389 eV Core-core repulsion = 15152.840845 eV Total energy + Delta-G solvation = -2478.432544 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.31638 -37.27204 -34.06310 -31.11371 -29.20808 -27.79961 -27.41336 -26.35552 -24.78048 -21.88468 -19.86981 -19.15000 -18.98210 -18.12692 -16.25240 -15.50205 -15.20179 -14.64336 -14.13633 -14.02644 -13.22687 -12.81418 -12.48688 -11.91940 -11.63451 -11.51569 -11.45487 -11.08806 -10.90822 -10.73686 -10.48683 -10.39001 -10.30706 -10.23506 -10.13830 -9.95645 -9.91513 -9.69791 -9.48812 -9.33203 -8.41355 -8.24901 -6.40367 -5.72343 -3.25466 2.80031 3.36339 3.46442 3.48144 4.51246 5.23218 5.33245 5.39632 5.50720 5.52014 5.54129 5.78317 5.88037 6.00464 6.05860 6.18264 6.32429 6.37794 6.42447 6.49843 6.51780 6.60416 6.62144 6.66805 6.68150 6.83911 6.91853 6.92348 7.01440 7.03695 7.13769 7.23897 7.34237 7.45035 7.49943 7.81925 7.94646 8.63478 9.29223 9.92631 10.51579 11.29482 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.011389 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.710681 B = 2457.844390 C = 3399.031431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.014 3.986 3 Si 0.884 3.116 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.059 0.941 9 N -0.577 5.577 10 C 0.154 3.846 11 C -0.102 4.102 12 C -0.079 4.079 13 C -0.165 4.165 14 C -0.184 4.184 15 C -0.095 4.095 16 C 0.171 3.829 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.133 4.133 21 H 0.253 0.747 22 H 0.020 0.980 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -5.887 -3.351 7.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.186 4.186 3 Si 0.714 3.286 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.077 0.923 9 N -0.296 5.296 10 C 0.028 3.972 11 C -0.123 4.123 12 C -0.116 4.116 13 C -0.183 4.183 14 C -0.202 4.202 15 C -0.133 4.133 16 C 0.063 3.937 17 C -0.170 4.170 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.172 4.172 21 H 0.063 0.937 22 H 0.039 0.961 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.545 -5.741 -3.404 7.142 hybrid contribution 0.474 0.968 -0.104 1.083 sum 3.018 -4.772 -3.508 6.648 Atomic orbital electron populations 1.69892 1.05423 1.25522 1.52604 1.25114 0.94904 0.98189 1.00353 0.86513 0.79972 0.84788 0.77325 1.20105 1.21477 1.21872 1.18868 0.93955 0.84882 1.39319 0.92320 1.43937 1.51198 1.02970 1.31481 1.20998 0.90305 1.02335 0.83566 1.22708 0.96546 0.96919 0.96129 1.21274 1.00400 0.99631 0.90316 1.23560 0.97984 0.98635 0.98107 1.23206 0.98210 1.00592 0.98176 1.21403 0.99191 0.98885 0.93787 1.21028 0.92392 0.88816 0.91468 1.22825 0.95907 1.01048 0.97200 1.22447 0.96526 0.98910 0.98312 1.22243 0.96574 1.00171 0.96480 1.22577 0.99279 0.99995 0.95390 0.93672 0.96146 0.88435 0.92361 0.89943 0.92073 0.87217 0.87227 0.92636 0.91103 0.93628 0.89782 0.93824 0.92978 0.92988 0.93569 0.92034 0.93970 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 11.43 55.49 0.63 -24.11 16 2 C 0.01 0.37 4.62 -17.43 -0.08 0.29 16 3 Si 0.88 21.15 29.61 -169.99 -5.03 16.12 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.12 7.09 -15.06 -0.11 -6.22 16 8 H 0.06 1.54 7.00 -52.49 -0.37 1.17 16 9 N -0.58 -13.49 2.37 -164.39 -0.39 -13.88 16 10 C 0.15 3.49 4.64 -4.05 -0.02 3.48 16 11 C -0.10 -2.02 3.37 -88.89 -0.30 -2.32 16 12 C -0.08 -1.59 5.69 -26.83 -0.15 -1.75 16 13 C -0.16 -2.84 10.78 -35.70 -0.38 -3.23 16 14 C -0.18 -2.99 10.77 -35.70 -0.38 -3.37 16 15 C -0.09 -1.64 6.38 -26.81 -0.17 -1.81 16 16 C 0.17 3.52 3.41 -66.81 -0.23 3.29 16 17 C -0.13 -2.62 6.43 -25.03 -0.16 -2.78 16 18 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 19 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 20 C -0.13 -2.48 6.15 -25.61 -0.16 -2.64 16 21 H 0.25 6.88 8.32 -40.82 -0.34 6.54 16 22 H 0.02 0.45 7.95 -51.92 -0.41 0.04 16 23 H 0.10 2.52 5.27 -51.93 -0.27 2.24 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.08 1.90 7.39 -51.93 -0.38 1.51 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.25 7.89 -51.93 -0.41 0.84 16 31 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 32 H 0.08 1.98 7.17 -51.93 -0.37 1.61 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 36 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.48 6.79 -51.93 -0.35 1.13 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -26.33 302.81 -9.48 -35.81 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.77 Total: 2.94 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -2.49 Total: -21.44 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.24 Total: -37.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.33 -9.48 -35.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.720 kcal (2) G-P(sol) polarization free energy of solvation -26.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds