Wall clock time and date at job start Sun Mar 29 2020 22:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48492 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46866 * 300.00284 * 3 2 1 6 6 H 1.48502 * 109.46912 * 60.00037 * 3 2 1 7 7 C 1.38811 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99347 * 200.96239 * 7 2 1 9 9 N 1.36933 * 120.00221 * 20.97156 * 7 2 1 10 10 C 1.46494 * 120.00337 * 37.42054 * 9 7 2 11 11 C 1.52998 * 109.47150 * 90.00108 * 10 9 7 12 12 C 1.54633 * 111.03863 * 287.02362 * 11 10 9 13 13 C 1.51103 * 104.72683 * 217.33449 * 12 11 10 14 14 C 1.30526 * 111.10388 * 16.43603 * 13 12 11 15 15 C 1.51104 * 111.10610 * 0.02562 * 14 13 12 16 16 C 1.46502 * 119.99577 * 217.70095 * 9 7 2 17 17 C 1.54265 * 110.03369 * 61.15148 * 16 9 7 18 18 C 1.54967 * 104.15590 * 217.13276 * 17 16 9 19 19 C 1.54887 * 102.77757 * 37.89417 * 18 17 16 20 20 C 1.53873 * 110.03155 * 303.93165 * 16 9 7 21 21 H 0.97000 * 120.00322 * 354.92937 * 1 2 3 22 22 H 1.09007 * 109.47441 * 210.00649 * 10 9 7 23 23 H 1.09002 * 109.47092 * 330.00292 * 10 9 7 24 24 H 1.09003 * 110.91234 * 51.03662 * 11 10 9 25 25 H 1.09001 * 110.38734 * 336.14467 * 12 11 10 26 26 H 1.09004 * 110.38640 * 98.52062 * 12 11 10 27 27 H 1.07999 * 124.44443 * 196.46163 * 13 12 11 28 28 H 1.07998 * 124.44708 * 180.02562 * 14 13 12 29 29 H 1.08994 * 110.38766 * 224.75064 * 15 14 13 30 30 H 1.09004 * 110.38781 * 102.36911 * 15 14 13 31 31 H 1.09007 * 110.01637 * 182.54308 * 16 9 7 32 32 H 1.08996 * 110.48563 * 335.78096 * 17 16 9 33 33 H 1.09001 * 110.48858 * 98.43052 * 17 16 9 34 34 H 1.09001 * 110.72310 * 279.57222 * 18 17 16 35 35 H 1.09008 * 110.91861 * 156.29313 * 18 17 16 36 36 H 1.09010 * 110.48360 * 203.40605 * 19 18 17 37 37 H 1.08994 * 110.60497 * 80.81289 * 19 18 17 38 38 H 1.09005 * 110.03164 * 238.57355 * 20 16 9 39 39 H 1.09002 * 110.03321 * 0.02562 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0366 -1.2332 0.3341 9 7 1.3936 -2.3486 -0.4255 10 6 0.4590 -2.3031 -1.5527 11 6 1.2227 -2.5346 -2.8580 12 6 2.0695 -1.2963 -3.2329 13 6 1.9729 -1.2062 -4.7382 14 6 0.9828 -1.9272 -5.1895 15 6 0.2536 -2.6178 -4.0605 16 6 1.6639 -3.6196 0.2511 17 6 1.2381 -3.5314 1.7312 18 6 2.3184 -4.3469 2.4857 19 6 3.6160 -3.9871 1.7201 20 6 3.1750 -3.9096 0.2439 21 1 -0.4850 0.8367 0.0742 22 1 -0.2958 -3.0800 -1.4305 23 1 -0.0258 -1.3273 -1.5835 24 1 1.8431 -3.4285 -2.7925 25 1 1.6558 -0.3996 -2.7716 26 1 3.1060 -1.4382 -2.9267 27 1 2.6362 -0.6224 -5.3590 28 1 0.7193 -2.0182 -6.2329 29 1 0.0556 -3.6585 -4.3168 30 1 -0.6774 -2.0974 -3.8353 31 1 1.1261 -4.4279 -0.2446 32 1 1.2391 -2.4945 2.0673 33 1 0.2540 -3.9782 1.8724 34 1 2.1130 -5.4152 2.4172 35 1 2.3854 -4.0339 3.5277 36 1 4.3663 -4.7666 1.8537 37 1 4.0036 -3.0246 2.0535 38 1 3.3706 -4.8591 -0.2546 39 1 3.7073 -3.1045 -0.2627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595329429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:14 Heat of formation + Delta-G solvation = 9.543713 kcal Electronic energy + Delta-G solvation = -17631.766294 eV Core-core repulsion = 15152.840845 eV Total energy + Delta-G solvation = -2478.925449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.90294 -38.79366 -35.81559 -33.03439 -30.78183 -29.32369 -28.90059 -28.05674 -26.56781 -23.66739 -21.31565 -20.76498 -20.70341 -19.49377 -18.11724 -17.12813 -16.74175 -16.33569 -15.94339 -15.58742 -14.88959 -14.55702 -14.03514 -13.49589 -13.35565 -13.20081 -12.90431 -12.84932 -12.77051 -12.41338 -12.19284 -11.92977 -11.83658 -11.81809 -11.71567 -11.64296 -11.45253 -11.32488 -11.21606 -11.05053 -10.40173 -9.66796 -8.35602 -7.73707 -5.28994 1.40281 1.46146 1.47385 1.53062 2.53237 3.32431 3.62536 3.97529 4.02601 4.04077 4.05755 4.27370 4.41711 4.53957 4.66540 4.72320 4.80173 4.92603 4.97317 4.97997 4.99772 5.02563 5.06562 5.21419 5.22889 5.26150 5.29481 5.34460 5.37674 5.55752 5.59935 5.67988 5.72526 5.75253 5.83815 5.99294 6.17374 6.61086 7.29853 8.01741 8.53771 9.24684 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.011389 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.710681 B = 2457.844390 C = 3399.031431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.029 4.029 3 Si 0.930 3.070 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.224 4.224 8 H 0.049 0.951 9 N -0.589 5.589 10 C 0.157 3.843 11 C -0.097 4.097 12 C -0.077 4.077 13 C -0.180 4.180 14 C -0.166 4.166 15 C -0.095 4.095 16 C 0.161 3.839 17 C -0.130 4.130 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.126 4.126 21 H 0.247 0.753 22 H 0.019 0.981 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -7.685 -4.348 9.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.225 4.225 3 Si 0.760 3.240 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.355 4.355 8 H 0.067 0.933 9 N -0.308 5.308 10 C 0.031 3.969 11 C -0.118 4.118 12 C -0.114 4.114 13 C -0.198 4.198 14 C -0.183 4.183 15 C -0.133 4.133 16 C 0.054 3.946 17 C -0.169 4.169 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.165 4.165 21 H 0.057 0.943 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.151 0.849 28 H 0.164 0.836 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.472 -7.556 -4.400 9.408 hybrid contribution 0.168 1.446 0.225 1.473 sum 3.641 -6.110 -4.175 8.247 Atomic orbital electron populations 1.70008 1.06463 1.25429 1.54741 1.25558 0.95353 1.00301 1.01296 0.85770 0.79363 0.82204 0.76641 1.19423 1.21988 1.22312 1.18866 0.93401 0.85764 1.37497 0.93296 1.44110 1.51029 1.03453 1.32241 1.20868 0.90530 1.00448 0.85036 1.22522 0.96838 0.96717 0.95689 1.21136 0.99330 0.98153 0.92828 1.23557 0.99759 1.00401 0.96112 1.23451 0.96703 0.98757 0.99415 1.21403 0.98226 1.00568 0.93064 1.21264 0.94102 0.87662 0.91541 1.22719 0.97493 0.99233 0.97463 1.22399 0.94602 0.99723 0.98291 1.22224 0.97423 1.00507 0.94935 1.22467 0.97100 1.00179 0.96794 0.94347 0.96220 0.91681 0.92161 0.93684 0.93299 0.84913 0.83639 0.90229 0.91827 0.92773 0.93981 0.93730 0.90352 0.91926 0.90386 0.93658 0.91611 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.28 11.43 21.65 0.25 -53.03 16 2 C -0.03 -1.57 4.62 84.86 0.39 -1.17 16 3 Si 0.93 44.86 29.61 68.60 2.03 46.89 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.22 -11.78 7.09 84.03 0.60 -11.18 16 8 H 0.05 2.64 7.00 -2.91 -0.02 2.62 16 9 N -0.59 -28.12 2.37 -674.02 -1.60 -29.72 16 10 C 0.16 7.29 4.64 86.38 0.40 7.69 16 11 C -0.10 -3.80 3.37 -9.67 -0.03 -3.83 16 12 C -0.08 -3.13 5.69 30.53 0.17 -2.96 16 13 C -0.18 -5.90 10.78 26.26 0.28 -5.62 16 14 C -0.17 -4.88 10.77 26.26 0.28 -4.60 16 15 C -0.09 -3.10 6.38 30.54 0.19 -2.91 16 16 C 0.16 6.57 3.41 45.71 0.16 6.73 16 17 C -0.13 -5.17 6.43 31.70 0.20 -4.97 16 18 C -0.11 -3.48 6.91 31.91 0.22 -3.25 16 19 C -0.11 -3.57 6.83 31.67 0.22 -3.35 16 20 C -0.13 -4.51 6.15 31.32 0.19 -4.32 16 21 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 22 H 0.02 0.88 7.95 -2.38 -0.02 0.86 16 23 H 0.07 3.51 5.27 -2.39 -0.01 3.49 16 24 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.04 2.15 7.39 -2.39 -0.02 2.13 16 26 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 28 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 2.19 7.89 -2.38 -0.02 2.18 16 31 H 0.05 2.10 7.85 -2.38 -0.02 2.08 16 32 H 0.04 2.02 7.17 -2.39 -0.02 2.01 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 2.03 8.14 -2.38 -0.02 2.02 16 39 H 0.05 1.92 6.79 -2.39 -0.02 1.91 16 Total: -1.00 -58.45 302.81 4.95 -53.51 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.99 Total: 16.10 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 3.28 Total: -33.75 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -1.35 Total: -82.75 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -58.45 4.95 -53.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.049 kcal (2) G-P(sol) polarization free energy of solvation -58.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds