Wall clock time and date at job start Sun Mar 29 2020 22:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99889 * 2 1 4 4 H 1.48499 * 109.47329 * 239.99614 * 3 2 1 5 5 H 1.48497 * 109.47443 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47477 * 119.99876 * 3 2 1 7 7 C 1.37875 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00108 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00264 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47495 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99805 * 293.95558 * 10 9 7 12 12 C 1.52999 * 109.47188 * 163.81547 * 11 10 9 13 13 C 1.52996 * 117.49874 * 245.39268 * 12 11 10 14 14 C 1.53003 * 117.49952 * 176.73342 * 12 11 10 15 15 C 1.46896 * 111.00187 * 170.00246 * 10 9 7 16 16 C 1.53008 * 109.46836 * 287.90324 * 15 10 9 17 17 C 1.54634 * 111.03450 * 289.27566 * 16 15 10 18 18 C 1.51101 * 104.72229 * 217.33289 * 17 16 15 19 19 C 1.30528 * 111.10797 * 16.44380 * 18 17 16 20 20 C 1.51109 * 111.10280 * 359.97438 * 19 18 17 21 21 H 0.96995 * 119.99712 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47339 * 59.99927 * 9 7 2 23 23 H 1.09000 * 109.47398 * 299.99965 * 9 7 2 24 24 H 1.09004 * 109.47331 * 43.81250 * 11 10 9 25 25 H 1.09003 * 109.46898 * 283.81898 * 11 10 9 26 26 H 1.08992 * 115.54774 * 31.06507 * 12 11 10 27 27 H 1.09003 * 117.50020 * 0.02562 * 13 12 11 28 28 H 1.09002 * 117.49890 * 145.01934 * 13 12 11 29 29 H 1.08993 * 117.50124 * 214.98191 * 14 12 11 30 30 H 1.09004 * 117.49622 * 0.02562 * 14 12 11 31 31 H 1.09006 * 109.47109 * 47.89997 * 15 10 9 32 32 H 1.08995 * 109.47083 * 167.90302 * 15 10 9 33 33 H 1.09001 * 110.91102 * 53.28781 * 16 15 10 34 34 H 1.08994 * 110.38684 * 336.14717 * 17 16 15 35 35 H 1.09001 * 110.38525 * 98.52487 * 17 16 15 36 36 H 1.07995 * 124.45056 * 196.45710 * 18 17 16 37 37 H 1.07998 * 124.44996 * 180.02562 * 19 18 17 38 38 H 1.08991 * 110.39065 * 224.75689 * 20 19 18 39 39 H 1.09001 * 110.47937 * 102.42558 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 2.9720 -3.6546 -1.2509 12 6 4.2040 -4.5430 -1.0678 13 6 5.5769 -3.8727 -1.1497 14 6 5.0960 -4.7745 -2.2892 15 6 1.5211 -4.8934 0.2399 16 6 1.0755 -4.9685 1.7017 17 6 2.2896 -5.1397 2.6440 18 6 1.8056 -6.0746 3.7279 19 6 0.7148 -6.6919 3.3637 20 6 0.2889 -6.2712 1.9762 21 1 -0.4849 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 3.2878 -2.6453 -1.5151 25 1 2.3469 -4.0596 -2.0468 26 1 4.0881 -5.3685 -0.3656 27 1 5.6024 -2.7986 -1.3336 28 1 6.3643 -4.2574 -0.5016 29 1 5.5671 -5.7522 -2.3903 30 1 4.8052 -4.2935 -3.2231 31 1 0.6488 -4.9649 -0.4100 32 1 2.2027 -5.7164 0.0251 33 1 0.4879 -4.0920 1.9748 34 1 3.1278 -5.5830 2.1065 35 1 2.5768 -4.1790 3.0715 36 1 2.2976 -6.2137 4.6792 37 1 0.1855 -7.4086 3.9741 38 1 -0.7838 -6.0801 1.9498 39 1 0.5557 -7.0361 1.2470 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595333237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:28 Heat of formation + Delta-G solvation = 36.604508 kcal Electronic energy + Delta-G solvation = -16886.572599 eV Core-core repulsion = 14408.820594 eV Total energy + Delta-G solvation = -2477.752005 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.74379 -37.34027 -35.23153 -32.49273 -29.88820 -27.76931 -27.44356 -25.58187 -23.43747 -22.02790 -21.04480 -19.92190 -19.09230 -18.32914 -16.49051 -15.79202 -15.32013 -14.84938 -14.70399 -14.09083 -13.56961 -13.03602 -12.67141 -12.28308 -12.03576 -11.93766 -11.81728 -11.49580 -11.19702 -11.03299 -10.85705 -10.76912 -10.69118 -10.55015 -10.30029 -10.11262 -9.98800 -9.64502 -9.39498 -9.13155 -8.58206 -8.39176 -7.15182 -5.99988 -4.00697 2.51692 3.34512 3.38746 3.41685 4.18022 4.44678 4.78649 5.04026 5.07371 5.21326 5.35134 5.35715 5.42128 5.53228 5.69282 5.73587 5.89249 5.94247 5.99806 6.08303 6.13745 6.21067 6.24211 6.29787 6.35965 6.43165 6.46960 6.50440 6.54657 6.82302 6.89146 6.90053 7.18491 7.35519 7.39741 7.84708 8.15676 8.27617 8.60536 9.07259 9.63169 11.10821 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.008403 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.664647 B = 3331.401939 C = 4508.116598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.531 5.531 11 C 0.091 3.909 12 C -0.134 4.134 13 C -0.175 4.175 14 C -0.192 4.192 15 C 0.066 3.934 16 C -0.084 4.084 17 C -0.082 4.082 18 C -0.164 4.164 19 C -0.178 4.178 20 C -0.097 4.097 21 H 0.261 0.739 22 H -0.012 1.012 23 H 0.034 0.966 24 H 0.087 0.913 25 H 0.021 0.979 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 -11.680 1.337 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.255 5.255 11 C -0.037 4.037 12 C -0.153 4.153 13 C -0.212 4.212 14 C -0.230 4.230 15 C -0.063 4.063 16 C -0.103 4.103 17 C -0.119 4.119 18 C -0.182 4.182 19 C -0.196 4.196 20 C -0.134 4.134 21 H 0.071 0.929 22 H 0.006 0.994 23 H 0.052 0.948 24 H 0.105 0.895 25 H 0.039 0.961 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.039 -11.456 1.711 12.632 hybrid contribution -0.191 0.757 -0.541 0.950 sum 4.848 -10.699 1.170 11.804 Atomic orbital electron populations 1.69950 1.06020 1.26778 1.51108 1.24977 0.94830 0.99202 0.95571 0.86603 0.79470 0.82966 0.78617 1.20356 1.21413 1.20189 1.21140 0.93453 0.89996 1.49843 0.91925 1.19742 0.90106 0.87325 0.96054 1.62013 1.27636 1.02681 1.33139 1.21559 0.92156 0.99322 0.90645 1.22364 0.92099 1.01444 0.99368 1.22936 0.97964 0.98948 1.01382 1.22946 1.05411 1.00806 0.93819 1.22041 0.96320 0.93385 0.94561 1.22022 0.96073 0.97121 0.95076 1.21255 0.97971 0.98515 0.94155 1.23459 0.97389 0.98416 0.98935 1.23211 0.98176 1.00791 0.97385 1.21407 1.00102 0.97389 0.94525 0.92944 0.99438 0.94814 0.89513 0.96112 0.88288 0.88752 0.89607 0.89585 0.89199 0.95908 0.92179 0.89629 0.91021 0.90828 0.86633 0.86677 0.91676 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.08 8.28 -34.44 -0.29 -14.36 16 8 H 0.06 1.73 7.26 -52.49 -0.38 1.35 16 9 C 0.19 4.96 4.57 -4.98 -0.02 4.94 16 10 N -0.53 -11.19 4.32 -236.06 -1.02 -12.21 16 11 C 0.09 1.78 5.09 -3.83 -0.02 1.76 16 12 C -0.13 -2.15 5.61 -90.62 -0.51 -2.66 16 13 C -0.18 -2.60 10.18 -26.70 -0.27 -2.87 16 14 C -0.19 -2.62 10.25 -26.69 -0.27 -2.89 16 15 C 0.07 1.18 4.08 -3.82 -0.02 1.16 16 16 C -0.08 -1.43 3.16 -88.90 -0.28 -1.71 16 17 C -0.08 -1.30 6.29 -26.83 -0.17 -1.47 16 18 C -0.16 -2.26 10.77 -35.70 -0.38 -2.64 16 19 C -0.18 -2.35 10.78 -35.69 -0.38 -2.74 16 20 C -0.10 -1.37 6.38 -26.83 -0.17 -1.54 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 23 H 0.03 0.93 6.36 -51.93 -0.33 0.60 16 24 H 0.09 1.87 6.32 -51.93 -0.33 1.54 16 25 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 26 H 0.10 1.55 6.84 -51.93 -0.36 1.20 16 27 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.42 8.05 -51.93 -0.42 0.01 16 32 H 0.06 0.97 6.31 -51.93 -0.33 0.65 16 33 H 0.09 1.69 6.51 -51.93 -0.34 1.36 16 34 H 0.07 1.12 7.78 -51.93 -0.40 0.71 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -28.73 312.04 -10.13 -38.86 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.64 Total: 1.50 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -2.88 Total: -23.57 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.28 Total: -38.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.73 -10.13 -38.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595333237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.466 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds