Wall clock time and date at job start Sun Mar 29 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99889 * 2 1 4 4 H 1.48499 * 109.47329 * 239.99614 * 3 2 1 5 5 H 1.48497 * 109.47443 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47477 * 119.99876 * 3 2 1 7 7 C 1.37875 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00108 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00264 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47495 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99805 * 293.95558 * 10 9 7 12 12 C 1.52999 * 109.47188 * 163.81547 * 11 10 9 13 13 C 1.52996 * 117.49874 * 245.39268 * 12 11 10 14 14 C 1.53003 * 117.49952 * 176.73342 * 12 11 10 15 15 C 1.46896 * 111.00187 * 170.00246 * 10 9 7 16 16 C 1.53008 * 109.46836 * 287.90324 * 15 10 9 17 17 C 1.54634 * 111.03450 * 289.27566 * 16 15 10 18 18 C 1.51101 * 104.72229 * 217.33289 * 17 16 15 19 19 C 1.30528 * 111.10797 * 16.44380 * 18 17 16 20 20 C 1.51109 * 111.10280 * 359.97438 * 19 18 17 21 21 H 0.96995 * 119.99712 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47339 * 59.99927 * 9 7 2 23 23 H 1.09000 * 109.47398 * 299.99965 * 9 7 2 24 24 H 1.09004 * 109.47331 * 43.81250 * 11 10 9 25 25 H 1.09003 * 109.46898 * 283.81898 * 11 10 9 26 26 H 1.08992 * 115.54774 * 31.06507 * 12 11 10 27 27 H 1.09003 * 117.50020 * 0.02562 * 13 12 11 28 28 H 1.09002 * 117.49890 * 145.01934 * 13 12 11 29 29 H 1.08993 * 117.50124 * 214.98191 * 14 12 11 30 30 H 1.09004 * 117.49622 * 0.02562 * 14 12 11 31 31 H 1.09006 * 109.47109 * 47.89997 * 15 10 9 32 32 H 1.08995 * 109.47083 * 167.90302 * 15 10 9 33 33 H 1.09001 * 110.91102 * 53.28781 * 16 15 10 34 34 H 1.08994 * 110.38684 * 336.14717 * 17 16 15 35 35 H 1.09001 * 110.38525 * 98.52487 * 17 16 15 36 36 H 1.07995 * 124.45056 * 196.45710 * 18 17 16 37 37 H 1.07998 * 124.44996 * 180.02562 * 19 18 17 38 38 H 1.08991 * 110.39065 * 224.75689 * 20 19 18 39 39 H 1.09001 * 110.47937 * 102.42558 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 2.9720 -3.6546 -1.2509 12 6 4.2040 -4.5430 -1.0678 13 6 5.5769 -3.8727 -1.1497 14 6 5.0960 -4.7745 -2.2892 15 6 1.5211 -4.8934 0.2399 16 6 1.0755 -4.9685 1.7017 17 6 2.2896 -5.1397 2.6440 18 6 1.8056 -6.0746 3.7279 19 6 0.7148 -6.6919 3.3637 20 6 0.2889 -6.2712 1.9762 21 1 -0.4849 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 3.2878 -2.6453 -1.5151 25 1 2.3469 -4.0596 -2.0468 26 1 4.0881 -5.3685 -0.3656 27 1 5.6024 -2.7986 -1.3336 28 1 6.3643 -4.2574 -0.5016 29 1 5.5671 -5.7522 -2.3903 30 1 4.8052 -4.2935 -3.2231 31 1 0.6488 -4.9649 -0.4100 32 1 2.2027 -5.7164 0.0251 33 1 0.4879 -4.0920 1.9748 34 1 3.1278 -5.5830 2.1065 35 1 2.5768 -4.1790 3.0715 36 1 2.2976 -6.2137 4.6792 37 1 0.1855 -7.4086 3.9741 38 1 -0.7838 -6.0801 1.9498 39 1 0.5557 -7.0361 1.2470 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595333237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:27 Heat of formation + Delta-G solvation = 21.288686 kcal Electronic energy + Delta-G solvation = -16887.236743 eV Core-core repulsion = 14408.820594 eV Total energy + Delta-G solvation = -2478.416149 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11196 -38.64848 -36.76246 -34.60604 -31.30419 -29.40483 -28.95556 -27.12416 -25.23762 -23.18398 -22.72110 -21.27250 -20.53850 -19.46079 -18.58967 -17.15001 -16.69737 -16.50513 -16.26816 -15.69248 -15.10581 -14.57489 -14.35951 -13.78771 -13.56223 -13.49544 -13.36921 -12.91704 -12.74004 -12.61416 -12.37272 -12.30009 -12.11558 -12.02004 -11.91763 -11.60813 -11.46330 -11.24081 -11.04485 -10.73039 -10.58385 -9.69089 -8.93797 -8.19861 -6.29144 1.39066 1.42164 1.45890 1.50016 2.39533 2.92391 3.12680 3.32383 3.82718 3.86385 3.91278 4.08418 4.15387 4.28426 4.46073 4.49474 4.57495 4.62760 4.72613 4.80548 4.83495 4.88217 4.93324 4.96082 5.05638 5.10414 5.17910 5.21159 5.27716 5.31914 5.34498 5.45426 5.51279 5.65543 5.69973 6.08809 6.13359 6.40796 6.69183 6.87604 7.40057 8.91045 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.008403 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.664647 B = 3331.401939 C = 4508.116598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.211 3.789 10 N -0.533 5.533 11 C 0.094 3.906 12 C -0.149 4.149 13 C -0.178 4.178 14 C -0.167 4.167 15 C 0.069 3.931 16 C -0.089 4.089 17 C -0.079 4.079 18 C -0.172 4.172 19 C -0.169 4.169 20 C -0.094 4.094 21 H 0.263 0.737 22 H -0.046 1.046 23 H 0.008 0.992 24 H 0.058 0.942 25 H 0.017 0.983 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.012 0.988 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.066 0.934 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.507 -13.165 1.644 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.256 5.256 11 C -0.034 4.034 12 C -0.168 4.168 13 C -0.215 4.215 14 C -0.204 4.204 15 C -0.059 4.059 16 C -0.108 4.108 17 C -0.116 4.116 18 C -0.190 4.190 19 C -0.187 4.187 20 C -0.131 4.131 21 H 0.072 0.928 22 H -0.028 1.028 23 H 0.026 0.974 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.031 0.969 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.085 0.915 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.684 -12.960 2.013 14.720 hybrid contribution -0.728 1.195 -0.672 1.552 sum 5.955 -11.766 1.341 13.255 Atomic orbital electron populations 1.70085 1.07682 1.27825 1.51932 1.25887 0.95705 1.03064 0.94966 0.85497 0.78227 0.78197 0.79087 1.19256 1.20819 1.19399 1.21429 0.93501 0.91151 1.49738 0.92071 1.19349 0.90104 0.88946 0.93161 1.61973 1.26639 1.02832 1.34195 1.21505 0.93468 0.98715 0.89699 1.22186 0.91022 1.01553 1.02007 1.22998 0.97401 0.98527 1.02585 1.23041 1.02945 1.01722 0.92741 1.22114 0.96259 0.92418 0.95124 1.21958 0.96872 0.97361 0.94648 1.21181 0.97560 0.98113 0.94777 1.23507 0.98074 0.98166 0.99274 1.23409 0.97758 1.00824 0.96700 1.21394 0.99740 0.95955 0.96055 0.92776 1.02838 0.97384 0.92344 0.96460 0.87406 0.90238 0.87656 0.86743 0.89174 0.96940 0.89503 0.93545 0.90453 0.93284 0.84362 0.83753 0.91509 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.09 5.46 84.65 0.46 0.56 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.52 -30.05 8.28 25.60 0.21 -29.84 16 8 H 0.06 3.48 7.26 -2.91 -0.02 3.46 16 9 C 0.21 11.50 4.57 85.55 0.39 11.89 16 10 N -0.53 -23.30 4.32 -900.77 -3.89 -27.19 16 11 C 0.09 3.73 5.09 86.30 0.44 4.17 16 12 C -0.15 -4.58 5.61 -10.79 -0.06 -4.64 16 13 C -0.18 -4.96 10.18 30.62 0.31 -4.65 16 14 C -0.17 -4.10 10.25 30.62 0.31 -3.79 16 15 C 0.07 2.51 4.08 86.31 0.35 2.86 16 16 C -0.09 -3.11 3.16 -9.68 -0.03 -3.14 16 17 C -0.08 -2.50 6.29 30.53 0.19 -2.30 16 18 C -0.17 -4.40 10.77 26.26 0.28 -4.12 16 19 C -0.17 -4.04 10.78 26.26 0.28 -3.76 16 20 C -0.09 -2.55 6.38 30.53 0.19 -2.35 16 21 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 22 H -0.05 -2.76 8.12 -2.39 -0.02 -2.78 16 23 H 0.01 0.48 6.36 -2.39 -0.02 0.46 16 24 H 0.06 2.62 6.32 -2.38 -0.02 2.60 16 25 H 0.02 0.68 8.05 -2.39 -0.02 0.66 16 26 H 0.11 3.13 6.84 -2.39 -0.02 3.12 16 27 H 0.08 2.45 8.04 -2.39 -0.02 2.43 16 28 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.01 0.48 8.05 -2.38 -0.02 0.46 16 32 H 0.09 2.71 6.31 -2.39 -0.02 2.69 16 33 H 0.05 1.96 6.51 -2.39 -0.02 1.95 16 34 H 0.08 2.31 7.78 -2.39 -0.02 2.29 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 37 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 2.07 7.89 -2.39 -0.02 2.05 16 Total: -1.00 -64.14 312.04 2.76 -61.38 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.99 Total: 14.82 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 3.34 Total: -39.09 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -3.60 Total: -84.24 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.14 2.76 -61.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595333237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.666 kcal (2) G-P(sol) polarization free energy of solvation -64.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds