Wall clock time and date at job start Sun Mar 29 2020 22:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47611 * 2 1 4 4 C 1.53007 * 109.46618 * 119.99899 * 2 1 3 5 5 C 1.50699 * 109.46549 * 184.99743 * 4 2 1 6 6 H 1.07993 * 120.00615 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99846 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99591 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00198 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47302 * 60.00406 * 9 7 5 11 11 H 1.48510 * 109.47082 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47405 * 300.00071 * 9 7 5 13 13 N 1.46904 * 109.47172 * 239.99597 * 2 1 3 14 14 C 1.46942 * 110.99644 * 70.32472 * 13 2 1 15 15 C 1.53375 * 109.92237 * 164.68211 * 14 13 2 16 16 N 1.46530 * 108.17067 * 49.92879 * 15 14 13 17 17 C 1.34134 * 129.34899 * 163.45706 * 16 15 14 18 18 N 1.30872 * 108.51220 * 180.43852 * 17 16 15 19 19 C 1.34499 * 109.33459 * 359.89309 * 18 17 16 20 20 C 1.33657 * 107.79534 * 359.97438 * 19 18 17 21 21 C 1.47430 * 110.99939 * 306.05030 * 13 2 1 22 22 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47282 * 300.00767 * 1 2 3 24 24 H 1.09007 * 109.46892 * 60.00181 * 1 2 3 25 25 H 1.08995 * 109.46959 * 304.99595 * 4 2 1 26 26 H 1.08993 * 109.47065 * 64.99955 * 4 2 1 27 27 H 0.97003 * 120.00102 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.40316 * 284.74017 * 14 13 2 29 29 H 1.08992 * 109.40663 * 44.50314 * 14 13 2 30 30 H 1.09000 * 109.68688 * 290.26863 * 15 14 13 31 31 H 1.09008 * 109.74091 * 169.61230 * 15 14 13 32 32 H 1.07996 * 125.74202 * 0.46769 * 17 16 15 33 33 H 1.07998 * 126.10166 * 179.97438 * 19 18 17 34 34 H 1.08993 * 109.77010 * 54.57959 * 21 13 2 35 35 H 1.08997 * 109.81231 * 293.82010 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6150 1.3128 6 1 4.0789 -0.0856 0.5397 7 6 4.2303 -1.1927 2.3585 8 7 3.5762 -1.8369 3.3002 9 14 6.0918 -1.0604 2.4375 10 1 6.4843 0.3706 2.4969 11 1 6.5867 -1.7595 3.6508 12 1 6.6844 -1.6865 1.2285 13 7 2.0197 -0.6926 -1.1994 14 6 1.7597 0.1008 -2.4086 15 6 2.5964 -0.4366 -3.5763 16 7 2.3990 -1.8867 -3.6505 17 6 2.6706 -2.7315 -4.6563 18 7 2.3237 -3.9391 -4.2898 19 6 1.8242 -3.8993 -3.0417 20 6 1.8646 -2.6298 -2.6257 21 6 1.4321 -2.0404 -1.3081 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6053 -0.2617 2.1370 26 1 1.7515 -1.7715 1.2057 27 1 4.0604 -2.2437 4.0357 28 1 0.7019 0.0367 -2.6633 29 1 2.0238 1.1418 -2.2224 30 1 3.6502 -0.2170 -3.4046 31 1 2.2702 0.0273 -4.5072 32 1 3.1032 -2.4609 -5.6081 33 1 1.4561 -4.7428 -2.4764 34 1 0.3449 -1.9725 -1.2733 35 1 1.7888 -2.6660 -0.4899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595492503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:49 Heat of formation + Delta-G solvation = 70.527138 kcal Electronic energy + Delta-G solvation = -17031.873942 eV Core-core repulsion = 14452.052589 eV Total energy + Delta-G solvation = -2579.821353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.00172 -38.16755 -34.44486 -32.70601 -31.24933 -30.18746 -27.79088 -27.39895 -25.07459 -23.50148 -22.26498 -21.21492 -19.62218 -18.34055 -17.17978 -16.23079 -15.92326 -14.89894 -14.80489 -14.31331 -13.97708 -13.87703 -13.47768 -13.00695 -12.59406 -12.42148 -12.08799 -11.96813 -11.78245 -11.39148 -11.10671 -10.90492 -10.68301 -10.46125 -10.11591 -9.70813 -9.30068 -9.23284 -9.08224 -8.30396 -8.16474 -7.65188 -5.93338 -3.91841 2.36140 3.02660 3.38031 3.42359 3.42504 3.45749 4.19203 4.52806 4.70748 4.88072 4.95486 5.10464 5.19302 5.43566 5.50297 5.58711 5.63097 5.72898 5.75982 5.84749 5.93108 6.00700 6.22542 6.37202 6.55242 6.62179 6.82615 6.99955 7.33532 7.42148 7.52737 7.72607 7.84695 8.06188 8.31574 8.50203 9.12950 9.70347 11.18430 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023738 B = 0.008027 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.263268 B = 3487.484774 C = 3934.299759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.088 3.912 3 H 0.074 0.926 4 C 0.030 3.970 5 C -0.495 4.495 6 H 0.058 0.942 7 C 0.053 3.947 8 N -0.902 5.902 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.512 5.512 14 C 0.038 3.962 15 C 0.111 3.889 16 N -0.451 5.451 17 C 0.172 3.828 18 N -0.501 5.501 19 C -0.032 4.032 20 C -0.003 4.003 21 C 0.125 3.875 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.259 0.741 28 H 0.036 0.964 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.200 0.800 33 H 0.168 0.832 34 H 0.052 0.948 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 3.731 -12.295 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.019 4.019 3 H 0.092 0.908 4 C -0.007 4.007 5 C -0.533 4.533 6 H 0.076 0.924 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.236 5.236 14 C -0.091 4.091 15 C -0.012 4.012 16 N -0.135 5.135 17 C -0.110 4.110 18 N -0.220 5.220 19 C -0.179 4.179 20 C -0.119 4.119 21 C -0.004 4.004 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.216 0.784 33 H 0.185 0.815 34 H 0.070 0.930 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.463 3.039 -12.586 13.696 hybrid contribution 0.233 0.868 0.446 1.003 sum -4.230 3.907 -12.140 13.437 Atomic orbital electron populations 1.22554 0.99425 1.01616 1.00962 1.21999 0.90254 0.98383 0.91284 0.90811 1.19193 0.96455 0.95428 0.89611 1.21081 0.91691 1.33478 1.07078 0.92359 1.24990 0.98033 0.95745 0.95939 1.69942 1.35384 1.36608 1.12282 0.86697 0.86332 0.77960 0.77189 1.20525 1.21553 1.20397 1.62271 1.58603 1.01465 1.01251 1.22357 0.97031 0.98833 0.90898 1.22103 1.02587 0.77045 0.99487 1.45356 1.46476 1.08605 1.13026 1.24590 1.05875 0.85251 0.95249 1.70498 1.17184 1.21052 1.13266 1.21682 1.07338 0.95286 0.93593 1.21396 1.05663 0.92587 0.92206 1.20866 0.96600 0.90880 0.92032 0.92505 0.92068 0.94209 0.96044 0.96195 0.93156 0.94547 0.88985 0.89075 0.89485 0.78371 0.81517 0.92990 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 8.48 37.16 0.32 -2.60 16 2 C 0.09 1.65 2.25 -67.71 -0.15 1.50 16 3 H 0.07 1.38 7.86 -51.93 -0.41 0.97 16 4 C 0.03 0.73 4.37 -27.88 -0.12 0.61 16 5 C -0.49 -13.47 8.84 -34.44 -0.30 -13.78 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.51 -9.06 4.32 -227.36 -0.98 -10.05 16 14 C 0.04 0.51 4.98 -3.61 -0.02 0.50 16 15 C 0.11 1.34 7.27 -3.83 -0.03 1.32 16 16 N -0.45 -6.79 3.14 -114.05 -0.36 -7.14 16 17 C 0.17 2.50 12.70 -90.89 -1.15 1.35 16 18 N -0.50 -8.65 11.28 -14.95 -0.17 -8.82 16 19 C -0.03 -0.55 11.85 -17.99 -0.21 -0.76 16 20 C 0.00 -0.06 6.67 -81.71 -0.54 -0.60 16 21 C 0.12 2.17 5.05 -4.70 -0.02 2.15 16 22 H 0.06 0.89 6.21 -51.93 -0.32 0.57 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.54 7.06 -51.92 -0.37 0.17 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.51 6.47 -51.93 -0.34 0.17 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.04 0.48 7.28 -51.93 -0.38 0.10 16 29 H 0.09 1.12 7.81 -51.93 -0.41 0.71 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 32 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 34 H 0.05 0.84 5.93 -51.93 -0.31 0.53 16 35 H 0.11 2.20 6.70 -51.93 -0.35 1.85 16 LS Contribution 280.83 15.07 4.23 4.23 Total: -1.00 -31.82 280.83 -8.85 -40.67 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.95 Total: -0.88 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.34 Total: -8.93 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.77 Total: -52.00 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.82 -8.85 -40.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595492503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.198 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds