Wall clock time and date at job start Sun Mar 29 2020 22:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47611 * 2 1 4 4 C 1.53007 * 109.46618 * 119.99899 * 2 1 3 5 5 C 1.50699 * 109.46549 * 184.99743 * 4 2 1 6 6 H 1.07993 * 120.00615 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99846 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99591 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00198 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47302 * 60.00406 * 9 7 5 11 11 H 1.48510 * 109.47082 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47405 * 300.00071 * 9 7 5 13 13 N 1.46904 * 109.47172 * 239.99597 * 2 1 3 14 14 C 1.46942 * 110.99644 * 70.32472 * 13 2 1 15 15 C 1.53375 * 109.92237 * 164.68211 * 14 13 2 16 16 N 1.46530 * 108.17067 * 49.92879 * 15 14 13 17 17 C 1.34134 * 129.34899 * 163.45706 * 16 15 14 18 18 N 1.30872 * 108.51220 * 180.43852 * 17 16 15 19 19 C 1.34499 * 109.33459 * 359.89309 * 18 17 16 20 20 C 1.33657 * 107.79534 * 359.97438 * 19 18 17 21 21 C 1.47430 * 110.99939 * 306.05030 * 13 2 1 22 22 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47282 * 300.00767 * 1 2 3 24 24 H 1.09007 * 109.46892 * 60.00181 * 1 2 3 25 25 H 1.08995 * 109.46959 * 304.99595 * 4 2 1 26 26 H 1.08993 * 109.47065 * 64.99955 * 4 2 1 27 27 H 0.97003 * 120.00102 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.40316 * 284.74017 * 14 13 2 29 29 H 1.08992 * 109.40663 * 44.50314 * 14 13 2 30 30 H 1.09000 * 109.68688 * 290.26863 * 15 14 13 31 31 H 1.09008 * 109.74091 * 169.61230 * 15 14 13 32 32 H 1.07996 * 125.74202 * 0.46769 * 17 16 15 33 33 H 1.07998 * 126.10166 * 179.97438 * 19 18 17 34 34 H 1.08993 * 109.77010 * 54.57959 * 21 13 2 35 35 H 1.08997 * 109.81231 * 293.82010 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6150 1.3128 6 1 4.0789 -0.0856 0.5397 7 6 4.2303 -1.1927 2.3585 8 7 3.5762 -1.8369 3.3002 9 14 6.0918 -1.0604 2.4375 10 1 6.4843 0.3706 2.4969 11 1 6.5867 -1.7595 3.6508 12 1 6.6844 -1.6865 1.2285 13 7 2.0197 -0.6926 -1.1994 14 6 1.7597 0.1008 -2.4086 15 6 2.5964 -0.4366 -3.5763 16 7 2.3990 -1.8867 -3.6505 17 6 2.6706 -2.7315 -4.6563 18 7 2.3237 -3.9391 -4.2898 19 6 1.8242 -3.8993 -3.0417 20 6 1.8646 -2.6298 -2.6257 21 6 1.4321 -2.0404 -1.3081 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6053 -0.2617 2.1370 26 1 1.7515 -1.7715 1.2057 27 1 4.0604 -2.2437 4.0357 28 1 0.7019 0.0367 -2.6633 29 1 2.0238 1.1418 -2.2224 30 1 3.6502 -0.2170 -3.4046 31 1 2.2702 0.0273 -4.5072 32 1 3.1032 -2.4609 -5.6081 33 1 1.4561 -4.7428 -2.4764 34 1 0.3449 -1.9725 -1.2733 35 1 1.7888 -2.6660 -0.4899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595492503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:49 Heat of formation + Delta-G solvation = 50.548195 kcal Electronic energy + Delta-G solvation = -17032.740294 eV Core-core repulsion = 14452.052589 eV Total energy + Delta-G solvation = -2580.687705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.18537 -39.52314 -35.81590 -34.57844 -32.70471 -31.46490 -29.30071 -28.89586 -26.34351 -25.24412 -23.65045 -22.40434 -21.06083 -19.60691 -18.42470 -18.25780 -17.07476 -16.60063 -16.20858 -15.86245 -15.28100 -15.03877 -14.74411 -14.35838 -14.10404 -13.87008 -13.55721 -13.37703 -13.22932 -12.97006 -12.60342 -12.48687 -12.39480 -12.17253 -11.82246 -11.13373 -11.07705 -10.94283 -10.47996 -10.37782 -9.43907 -8.96405 -8.10527 -6.14788 1.16234 1.40291 1.42940 1.49641 1.94618 2.19491 2.46125 2.93528 3.25409 3.67321 3.75120 3.91628 4.02504 4.17036 4.29094 4.36581 4.41825 4.51128 4.53400 4.65862 4.74018 4.82059 4.93296 5.00522 5.17739 5.25130 5.35302 5.51417 5.67690 5.75491 5.88669 6.19723 6.24640 6.40443 6.48455 6.99066 7.11924 7.50944 9.01177 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023738 B = 0.008027 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.263268 B = 3487.484774 C = 3934.299759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 H 0.077 0.923 4 C 0.034 3.966 5 C -0.499 4.499 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.535 5.535 14 C 0.037 3.963 15 C 0.109 3.891 16 N -0.453 5.453 17 C 0.187 3.813 18 N -0.536 5.536 19 C -0.048 4.048 20 C -0.024 4.024 21 C 0.135 3.865 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.068 0.932 25 H -0.004 1.004 26 H -0.005 1.005 27 H 0.258 0.742 28 H 0.048 0.952 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.244 0.756 33 H 0.171 0.829 34 H 0.063 0.937 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 5.393 -14.663 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.009 4.009 3 H 0.095 0.905 4 C -0.003 4.003 5 C -0.538 4.538 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.259 5.259 14 C -0.091 4.091 15 C -0.012 4.012 16 N -0.136 5.136 17 C -0.095 4.095 18 N -0.256 5.256 19 C -0.195 4.195 20 C -0.140 4.140 21 C 0.007 3.993 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.151 0.849 32 H 0.260 0.740 33 H 0.188 0.812 34 H 0.081 0.919 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.046 4.730 -14.964 16.207 hybrid contribution 0.103 0.356 1.133 1.192 sum -3.943 5.086 -13.832 15.255 Atomic orbital electron populations 1.22418 0.96912 1.01779 1.02423 1.21666 0.92202 0.97427 0.89593 0.90464 1.19059 0.95066 0.94466 0.91726 1.21458 0.93371 1.32438 1.06520 0.92370 1.25816 1.02542 0.95775 0.95899 1.70075 1.37032 1.37921 1.13022 0.85696 0.81050 0.78448 0.76942 1.19166 1.21467 1.20339 1.62101 1.59399 1.01890 1.02546 1.22492 0.98158 0.99116 0.89377 1.22373 1.02481 0.75427 1.00932 1.45567 1.45853 1.09784 1.12382 1.25459 1.03625 0.84326 0.96128 1.70492 1.18770 1.22928 1.13395 1.21910 1.07667 0.95814 0.94108 1.21303 1.07067 0.92971 0.92621 1.20579 0.97039 0.90510 0.91221 0.93012 0.92011 0.91260 0.98573 0.98650 0.93320 0.93407 0.87174 0.89150 0.84900 0.74015 0.81202 0.91907 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.27 8.48 71.98 0.61 -4.66 16 2 C 0.10 3.64 2.25 44.92 0.10 3.74 16 3 H 0.08 2.78 7.86 -2.39 -0.02 2.76 16 4 C 0.03 1.69 4.37 29.85 0.13 1.83 16 5 C -0.50 -27.61 8.84 25.60 0.23 -27.38 16 6 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 8 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 9 Si 0.95 45.36 29.54 68.60 2.03 47.38 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 N -0.54 -18.36 4.32 -873.25 -3.77 -22.12 16 14 C 0.04 0.87 4.98 86.42 0.43 1.30 16 15 C 0.11 2.22 7.27 86.50 0.63 2.85 16 16 N -0.45 -12.41 3.14 -514.73 -1.62 -14.02 16 17 C 0.19 4.87 12.70 180.44 2.29 7.16 16 18 N -0.54 -17.83 11.28 -201.21 -2.27 -20.10 16 19 C -0.05 -1.66 11.85 83.24 0.99 -0.67 16 20 C -0.02 -0.80 6.67 40.64 0.27 -0.53 16 21 C 0.14 4.75 5.05 85.45 0.43 5.18 16 22 H 0.05 1.59 6.21 -2.39 -0.01 1.57 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.07 1.67 7.06 -2.38 -0.02 1.65 16 25 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 26 H 0.00 -0.26 6.47 -2.39 -0.02 -0.28 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.05 1.06 7.28 -2.39 -0.02 1.04 16 29 H 0.11 2.24 7.81 -2.39 -0.02 2.22 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.24 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.17 5.36 8.06 -2.91 -0.02 5.34 16 34 H 0.06 2.01 5.93 -2.39 -0.01 2.00 16 35 H 0.07 3.02 6.70 -2.39 -0.02 3.01 16 Total: -1.00 -70.30 280.83 2.30 -68.00 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.07 Total: 8.76 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 6.57 Total: -10.96 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -7.37 Total: -113.19 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -70.30 2.30 -68.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595492503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.551 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds