Wall clock time and date at job start Sun Mar 29 2020 22:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 5 5 H 1.08006 * 119.99850 * 119.99913 * 4 2 1 6 6 C 1.37875 * 119.99836 * 300.00378 * 4 2 1 7 7 N 1.31512 * 119.99942 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99860 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47274 * 89.99885 * 8 6 4 10 10 H 1.48497 * 109.47133 * 209.99707 * 8 6 4 11 11 H 1.48500 * 109.47098 * 329.99930 * 8 6 4 12 12 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 13 13 C 1.46902 * 110.99573 * 84.99799 * 12 2 1 14 14 C 1.50707 * 109.46656 * 179.97438 * 13 12 2 15 15 C 1.39785 * 125.88704 * 95.00164 * 14 13 12 16 16 C 1.35536 * 107.88852 * 180.02562 * 15 14 13 17 17 N 1.34713 * 107.88966 * 359.85360 * 16 15 14 18 18 N 1.30698 * 125.89928 * 274.69060 * 14 13 12 19 19 C 1.47141 * 111.01292 * 180.26524 * 17 16 15 20 20 C 1.54376 * 105.57284 * 342.86935 * 19 17 16 21 21 C 1.51432 * 141.97369 * 179.79918 * 16 15 14 22 22 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 23 23 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 24 24 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 25 25 H 0.97007 * 119.99842 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00309 * 321.04211 * 12 2 1 27 27 H 1.08990 * 109.47358 * 299.99539 * 13 12 2 28 28 H 1.09004 * 109.47457 * 60.00221 * 13 12 2 29 29 H 1.07998 * 126.05794 * 0.02947 * 15 14 13 30 30 H 1.09010 * 110.22687 * 223.84352 * 19 17 16 31 31 H 1.08998 * 110.29939 * 101.93545 * 19 17 16 32 32 H 1.09002 * 110.96752 * 267.60719 * 20 19 17 33 33 H 1.08996 * 110.96946 * 143.84465 * 20 19 17 34 34 H 1.09002 * 110.48626 * 315.25393 * 21 16 15 35 35 H 1.08992 * 110.48530 * 77.89839 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9495 5.1120 11 1 2.4860 -2.5664 3.7118 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5884 -0.5214 -3.5558 15 6 1.7969 -1.1164 -4.5424 16 6 2.6242 -1.6829 -5.4543 17 7 3.8922 -1.4526 -5.0620 18 7 3.8430 -0.7169 -3.8656 19 6 4.8526 -2.0361 -6.0119 20 6 4.0440 -3.0514 -6.8477 21 6 2.6135 -2.4757 -6.7445 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7095 1.1616 3.4845 26 1 1.4496 -1.4979 -1.4101 27 1 1.0870 0.6163 -2.5525 28 1 2.7588 1.0464 -2.1182 29 1 0.7174 -1.1233 -4.5728 30 1 5.6536 -2.5436 -5.4742 31 1 5.2651 -1.2605 -6.6571 32 1 4.0963 -4.0477 -6.4085 33 1 4.3856 -3.0646 -7.8827 34 1 1.8811 -3.2812 -6.6912 35 1 2.4031 -1.8229 -7.5916 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597084436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:26 Heat of formation + Delta-G solvation = 87.334132 kcal Electronic energy + Delta-G solvation = -16069.228809 eV Core-core repulsion = 13490.136262 eV Total energy + Delta-G solvation = -2579.092547 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48450 -36.80268 -35.48947 -32.52167 -30.84048 -29.85168 -28.15683 -26.71872 -25.11064 -24.24060 -21.73983 -20.16765 -19.97172 -19.19501 -16.69051 -16.19978 -15.76670 -14.73776 -14.50243 -14.25592 -13.77003 -13.46002 -13.25335 -12.90730 -12.66259 -12.55382 -11.97137 -11.80687 -11.64578 -11.34195 -11.20830 -10.86337 -10.72553 -10.51028 -10.12621 -10.05240 -9.83489 -8.97491 -8.80901 -8.29178 -8.28189 -7.14380 -5.91421 -3.93909 2.06839 2.48299 3.04995 3.38690 3.44217 3.49278 3.95244 4.34563 4.48279 4.51436 4.68425 5.05623 5.20819 5.29327 5.31565 5.40230 5.48163 5.54694 5.65256 5.79486 5.93088 6.10905 6.25768 6.45184 6.75726 6.90945 6.96468 7.06523 7.15896 7.43051 7.81100 7.96197 8.12500 8.34426 8.62463 8.68808 9.13351 9.70967 11.15750 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.045901 B = 0.004693 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.863154 B = 5964.929287 C = 6266.150803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.676 5.676 13 C 0.139 3.861 14 C 0.095 3.905 15 C -0.253 4.253 16 C 0.048 3.952 17 N -0.400 5.400 18 N -0.255 5.255 19 C 0.131 3.869 20 C -0.132 4.132 21 C -0.064 4.064 22 H 0.089 0.911 23 H 0.006 0.994 24 H 0.028 0.972 25 H 0.259 0.741 26 H 0.327 0.673 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.141 0.859 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -5.927 -19.686 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.053 0.947 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.307 5.307 13 C 0.008 3.992 14 C -0.072 4.072 15 C -0.282 4.282 16 C -0.080 4.080 17 N -0.183 5.183 18 N -0.076 5.076 19 C 0.010 3.990 20 C -0.171 4.171 21 C -0.102 4.102 22 H 0.108 0.892 23 H 0.025 0.975 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.159 0.841 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.624 -5.504 -19.006 20.320 hybrid contribution -1.494 -0.449 0.431 1.619 sum 3.130 -5.953 -18.575 19.755 Atomic orbital electron populations 1.22438 1.00592 0.99265 1.00560 1.19213 0.89657 0.94539 0.86252 0.94652 1.21161 1.29961 1.12393 0.89550 0.91970 1.24937 0.95383 0.95257 0.98976 1.69886 1.37469 1.23274 1.23249 0.86503 0.78419 0.80035 0.82448 1.20791 1.21453 1.19982 1.60779 1.58383 1.08843 1.02667 1.20250 0.98265 0.94497 0.86221 1.22513 0.89911 0.98136 0.96651 1.20586 0.99940 1.10420 0.97301 1.22122 0.87908 1.00778 0.97198 1.50161 1.06469 1.43074 1.18602 1.77510 1.20242 1.14294 0.95507 1.22209 0.91764 0.95966 0.89071 1.22785 0.94364 0.98964 1.00952 1.20826 0.97677 0.98760 0.92976 0.89210 0.97478 0.95294 0.93135 0.85622 0.94023 0.90240 0.84067 0.89290 0.89834 0.89542 0.88362 0.88990 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.94 37.16 0.33 -3.80 16 2 C 0.21 5.49 2.57 -68.86 -0.18 5.32 16 3 H 0.04 1.00 7.80 -51.93 -0.40 0.60 16 4 C -0.49 -14.11 8.84 -34.44 -0.30 -14.42 16 5 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 6 C 0.05 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -26.21 11.32 55.43 0.63 -25.59 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.68 -15.50 6.22 -109.21 -0.68 -16.18 16 13 C 0.14 2.77 6.04 -4.97 -0.03 2.74 16 14 C 0.10 1.79 6.72 -82.49 -0.55 1.23 16 15 C -0.25 -4.04 10.74 -39.97 -0.43 -4.47 16 16 C 0.05 0.67 7.49 -81.93 -0.61 0.05 16 17 N -0.40 -6.14 4.85 -55.72 -0.27 -6.41 16 18 N -0.25 -4.98 12.70 33.64 0.43 -4.55 16 19 C 0.13 1.27 7.78 -2.97 -0.02 1.25 16 20 C -0.13 -0.85 7.17 -25.19 -0.18 -1.03 16 21 C -0.06 -0.53 6.86 -26.71 -0.18 -0.71 16 22 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 23 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 24 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.33 7.19 8.46 -39.29 -0.33 6.86 16 27 H 0.04 0.77 7.43 -51.93 -0.39 0.39 16 28 H 0.08 1.64 8.06 -51.93 -0.42 1.22 16 29 H 0.14 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 290.85 15.07 4.38 4.38 Total: -1.00 -33.02 290.85 -7.96 -40.98 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.17 Total: 2.67 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.26 Total: -12.38 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.11 Total: -52.73 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.02 -7.96 -40.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597084436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.313 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds