Wall clock time and date at job start Sun Mar 29 2020 22:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 5 5 H 1.08006 * 119.99850 * 119.99913 * 4 2 1 6 6 C 1.37875 * 119.99836 * 300.00378 * 4 2 1 7 7 N 1.31512 * 119.99942 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99860 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47274 * 89.99885 * 8 6 4 10 10 H 1.48497 * 109.47133 * 209.99707 * 8 6 4 11 11 H 1.48500 * 109.47098 * 329.99930 * 8 6 4 12 12 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 13 13 C 1.46902 * 110.99573 * 84.99799 * 12 2 1 14 14 C 1.50707 * 109.46656 * 179.97438 * 13 12 2 15 15 C 1.39785 * 125.88704 * 95.00164 * 14 13 12 16 16 C 1.35536 * 107.88852 * 180.02562 * 15 14 13 17 17 N 1.34713 * 107.88966 * 359.85360 * 16 15 14 18 18 N 1.30698 * 125.89928 * 274.69060 * 14 13 12 19 19 C 1.47141 * 111.01292 * 180.26524 * 17 16 15 20 20 C 1.54376 * 105.57284 * 342.86935 * 19 17 16 21 21 C 1.51432 * 141.97369 * 179.79918 * 16 15 14 22 22 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 23 23 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 24 24 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 25 25 H 0.97007 * 119.99842 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00309 * 321.04211 * 12 2 1 27 27 H 1.08990 * 109.47358 * 299.99539 * 13 12 2 28 28 H 1.09004 * 109.47457 * 60.00221 * 13 12 2 29 29 H 1.07998 * 126.05794 * 0.02947 * 15 14 13 30 30 H 1.09010 * 110.22687 * 223.84352 * 19 17 16 31 31 H 1.08998 * 110.29939 * 101.93545 * 19 17 16 32 32 H 1.09002 * 110.96752 * 267.60719 * 20 19 17 33 33 H 1.08996 * 110.96946 * 143.84465 * 20 19 17 34 34 H 1.09002 * 110.48626 * 315.25393 * 21 16 15 35 35 H 1.08992 * 110.48530 * 77.89839 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9495 5.1120 11 1 2.4860 -2.5664 3.7118 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5884 -0.5214 -3.5558 15 6 1.7969 -1.1164 -4.5424 16 6 2.6242 -1.6829 -5.4543 17 7 3.8922 -1.4526 -5.0620 18 7 3.8430 -0.7169 -3.8656 19 6 4.8526 -2.0361 -6.0119 20 6 4.0440 -3.0514 -6.8477 21 6 2.6135 -2.4757 -6.7445 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7095 1.1616 3.4845 26 1 1.4496 -1.4979 -1.4101 27 1 1.0870 0.6163 -2.5525 28 1 2.7588 1.0464 -2.1182 29 1 0.7174 -1.1233 -4.5728 30 1 5.6536 -2.5436 -5.4742 31 1 5.2651 -1.2605 -6.6571 32 1 4.0963 -4.0477 -6.4085 33 1 4.3856 -3.0646 -7.8827 34 1 1.8811 -3.2812 -6.6912 35 1 2.4031 -1.8229 -7.5916 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597084436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:25 Heat of formation + Delta-G solvation = 63.910238 kcal Electronic energy + Delta-G solvation = -16070.244545 eV Core-core repulsion = 13490.136262 eV Total energy + Delta-G solvation = -2580.108283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.60046 -38.21793 -36.94301 -34.51417 -32.02513 -31.24749 -29.58200 -27.83418 -27.22453 -25.77519 -22.50393 -22.15136 -21.16962 -20.46705 -18.32779 -17.52265 -16.81771 -16.72722 -16.15856 -15.45050 -15.27035 -14.67376 -14.43176 -14.17375 -13.99555 -13.68627 -13.53382 -13.43585 -12.89470 -12.73323 -12.68762 -12.42469 -12.35337 -12.15290 -12.00294 -11.82382 -11.40473 -11.06730 -10.48075 -10.02670 -9.46382 -8.98923 -8.09220 -6.20356 0.91995 1.42762 1.43662 1.48075 1.54758 1.75186 2.45257 3.18621 3.19120 3.61440 3.70973 3.86710 3.95242 4.11737 4.38684 4.46268 4.58712 4.61045 4.69105 4.74927 4.87478 4.88690 4.93120 5.03185 5.09195 5.15962 5.23789 5.41470 5.69570 5.70830 5.82399 6.02564 6.26664 6.62692 6.76140 6.89432 6.93267 7.49091 8.96420 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.045901 B = 0.004693 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.863154 B = 5964.929287 C = 6266.150803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.517 4.517 5 H 0.049 0.951 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.279 1.279 10 H -0.279 1.279 11 H -0.271 1.271 12 N -0.683 5.683 13 C 0.146 3.854 14 C 0.076 3.924 15 C -0.279 4.279 16 C 0.059 3.941 17 N -0.404 5.404 18 N -0.311 5.311 19 C 0.112 3.888 20 C -0.115 4.115 21 C -0.061 4.061 22 H 0.064 0.936 23 H 0.030 0.970 24 H 0.033 0.967 25 H 0.262 0.738 26 H 0.333 0.667 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.155 0.845 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -7.644 -21.794 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 H 0.022 0.978 4 C -0.556 4.556 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.788 3.212 9 H -0.205 1.205 10 H -0.204 1.204 11 H -0.196 1.196 12 N -0.314 5.314 13 C 0.015 3.985 14 C -0.090 4.090 15 C -0.308 4.308 16 C -0.071 4.071 17 N -0.188 5.188 18 N -0.134 5.134 19 C -0.007 4.007 20 C -0.154 4.154 21 C -0.099 4.099 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.150 0.850 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.173 0.827 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.157 0.843 34 H 0.129 0.871 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.683 -7.223 -21.132 22.818 hybrid contribution -1.435 0.079 0.959 1.728 sum 3.248 -7.145 -20.172 21.645 Atomic orbital electron populations 1.22221 0.99297 0.99472 1.00425 1.18993 0.90558 0.92750 0.86997 0.97774 1.21411 1.30521 1.12473 0.91175 0.93257 1.25697 0.95402 0.95916 1.01766 1.70004 1.37897 1.24143 1.24057 0.85501 0.77969 0.78934 0.78841 1.20469 1.20425 1.19563 1.60615 1.58371 1.09410 1.02967 1.20098 0.98604 0.93739 0.86048 1.22290 0.90604 0.99181 0.96890 1.20799 1.00896 1.11540 0.97609 1.22990 0.86738 0.99131 0.98221 1.50600 1.08598 1.41884 1.17670 1.77316 1.20938 1.16647 0.98465 1.22795 0.91846 0.97339 0.88701 1.22874 0.92238 0.97740 1.02513 1.21109 0.99396 0.98994 0.90433 0.91713 0.95093 0.94777 0.92883 0.85023 0.92689 0.92111 0.82692 0.89213 0.88028 0.89053 0.84271 0.87090 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.65 8.94 71.98 0.64 -7.01 16 2 C 0.22 11.57 2.57 44.17 0.11 11.68 16 3 H 0.00 0.25 7.80 -2.39 -0.02 0.24 16 4 C -0.52 -30.38 8.84 25.60 0.23 -30.16 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -54.45 11.32 21.45 0.24 -54.21 16 8 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 N -0.68 -32.29 6.22 -499.44 -3.11 -35.40 16 13 C 0.15 6.05 6.04 85.56 0.52 6.57 16 14 C 0.08 2.92 6.72 43.10 0.29 3.21 16 15 C -0.28 -8.77 10.74 22.02 0.24 -8.53 16 16 C 0.06 1.52 7.49 41.72 0.31 1.83 16 17 N -0.40 -11.97 4.85 -330.19 -1.60 -13.57 16 18 N -0.31 -12.45 12.70 -47.50 -0.60 -13.06 16 19 C 0.11 1.89 7.78 86.72 0.67 2.56 16 20 C -0.12 -0.96 7.17 31.59 0.23 -0.74 16 21 C -0.06 -0.75 6.86 30.61 0.21 -0.54 16 22 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 23 H 0.03 1.33 7.45 -2.39 -0.02 1.31 16 24 H 0.03 1.60 8.13 -2.38 -0.02 1.58 16 25 H 0.26 14.67 8.31 -92.70 -0.77 13.89 16 26 H 0.33 14.91 8.46 -89.70 -0.76 14.15 16 27 H 0.06 2.09 7.43 -2.39 -0.02 2.07 16 28 H 0.06 2.68 8.06 -2.38 -0.02 2.66 16 29 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.14 0.12 8.14 -2.39 -0.02 0.11 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -73.94 290.85 1.18 -72.76 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.32 Total: 15.86 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 3.90 Total: -20.06 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -5.07 Total: -116.23 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.94 1.18 -72.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597084436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.675 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds