Wall clock time and date at job start Sun Mar 29 2020 21:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.50706 * 126.04281 * 359.97438 * 3 2 1 5 5 N 1.46890 * 109.47239 * 79.99626 * 4 3 2 6 6 C 1.47480 * 110.99935 * 265.97098 * 5 4 3 7 7 C 1.53511 * 87.93392 * 221.29681 * 6 5 4 8 8 C 1.50708 * 114.34316 * 139.68498 * 7 6 5 9 9 H 1.08004 * 119.99475 * 266.07976 * 8 7 6 10 10 C 1.37875 * 119.99955 * 86.07935 * 8 7 6 11 11 N 1.31516 * 120.00114 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99786 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47428 * 89.99998 * 12 10 8 14 14 H 1.48503 * 109.47200 * 209.99957 * 12 10 8 15 15 H 1.48500 * 109.47567 * 329.99708 * 12 10 8 16 16 C 1.47483 * 110.99937 * 170.00410 * 5 4 3 17 17 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 18 18 N 1.30836 * 108.19611 * 0.02562 * 17 3 2 19 19 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 20 20 C 1.46508 * 126.03491 * 0.04077 * 19 2 1 21 21 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 22 22 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 23 23 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 24 24 H 1.08997 * 109.46928 * 200.00020 * 4 3 2 25 25 H 1.08998 * 109.46315 * 319.99691 * 4 3 2 26 26 H 1.08998 * 113.47665 * 336.06817 * 6 5 4 27 27 H 1.09005 * 113.47298 * 106.53384 * 6 5 4 28 28 H 1.09004 * 114.17292 * 272.37763 * 7 6 5 29 29 H 0.96998 * 119.99755 * 180.02562 * 11 10 8 30 30 H 1.08999 * 113.47505 * 253.46991 * 16 5 4 31 31 H 1.09002 * 113.47568 * 23.87593 * 16 5 4 32 32 H 1.08001 * 125.89657 * 180.02562 * 17 3 2 33 33 H 1.08997 * 109.47057 * 89.99662 * 20 19 2 34 34 H 1.08995 * 109.46473 * 209.99727 * 20 19 2 35 35 H 1.09002 * 109.46903 * 329.99696 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5276 -0.0005 5 7 1.4638 2.9204 1.3630 6 6 0.0172 2.7360 1.5829 7 6 0.0174 4.0742 2.3353 8 6 -1.1801 4.9450 2.0544 9 1 -1.1297 5.7003 1.2840 10 6 -2.3399 4.7774 2.7808 11 7 -2.4011 3.8580 3.7192 12 14 -3.8244 5.8562 2.4322 13 1 -4.6731 5.2114 1.3982 14 1 -4.6116 6.0330 3.6789 15 1 -3.3688 7.1820 1.9423 16 6 1.2347 4.3748 1.4497 17 6 3.6335 0.6560 0.0006 18 7 3.6334 -0.6524 0.0004 19 7 2.3027 -1.0899 0.0060 20 6 1.8539 -2.4846 0.0127 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 2.6514 3.1691 -0.3519 25 1 0.9829 2.6321 -0.6615 26 1 -0.5677 2.7550 0.6633 27 1 -0.2202 1.8816 2.2168 28 1 0.2481 3.9891 3.3972 29 1 -3.2172 3.7398 4.2300 30 1 2.0292 4.9092 1.9705 31 1 0.9758 4.8312 0.4943 32 1 4.5084 1.2892 0.0011 33 1 1.7431 -2.8356 -1.0132 34 1 2.5896 -3.1003 0.5300 35 1 0.8951 -2.5552 0.5264 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:08 Heat of formation + Delta-G solvation = 112.349915 kcal Electronic energy + Delta-G solvation = -16549.872944 eV Core-core repulsion = 13971.865163 eV Total energy + Delta-G solvation = -2578.007781 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07011 -38.74360 -33.52931 -32.89097 -32.08083 -29.59355 -26.94946 -26.55383 -24.79160 -24.68185 -22.20000 -20.54810 -19.02420 -18.60205 -16.63899 -16.22155 -15.57439 -14.79759 -14.49662 -14.13620 -13.99611 -13.52712 -13.42432 -12.94731 -12.58127 -12.38885 -12.08959 -11.90042 -11.84242 -11.50103 -11.03066 -10.97756 -10.59464 -10.51621 -10.15611 -9.64112 -9.27313 -9.02011 -8.89002 -8.43671 -8.01457 -7.82505 -6.05135 -4.09437 2.09455 2.70325 3.07053 3.28013 3.35587 3.38727 4.40380 4.64196 4.91766 5.09974 5.19973 5.21429 5.26211 5.31413 5.41011 5.50509 5.68352 5.80167 6.06162 6.11825 6.16271 6.27910 6.36075 6.45728 6.55371 6.72801 6.80675 6.91038 7.13709 7.25725 7.28924 7.74476 7.93181 7.95084 8.16088 8.38908 8.94101 9.55455 11.04349 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.039343 B = 0.005831 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.509777 B = 4800.546858 C = 5219.190733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.093 3.907 3 C -0.214 4.214 4 C 0.097 3.903 5 N -0.478 5.478 6 C 0.005 3.995 7 C 0.040 3.960 8 C -0.515 4.515 9 H 0.058 0.942 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.007 4.007 17 C 0.060 3.940 18 N -0.311 5.311 19 N -0.381 5.381 20 C 0.104 3.896 21 H 0.074 0.926 22 H 0.105 0.895 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.261 0.739 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.179 0.821 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -8.579 -7.933 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.034 4.034 3 C -0.226 4.226 4 C -0.033 4.033 5 N -0.201 5.201 6 C -0.124 4.124 7 C 0.021 3.979 8 C -0.553 4.553 9 H 0.076 0.924 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.717 3.283 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.135 4.135 17 C -0.125 4.125 18 N -0.132 5.132 19 N -0.164 5.164 20 C -0.038 4.038 21 H 0.093 0.907 22 H 0.124 0.876 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.196 0.804 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.544 -10.219 -7.388 14.207 hybrid contribution -1.838 1.403 -0.798 2.446 sum 4.706 -8.816 -8.186 12.919 Atomic orbital electron populations 1.20804 0.87508 1.05321 1.03058 1.20849 0.94459 0.86935 1.01146 1.19735 0.92142 0.95311 1.15402 1.20855 0.99360 0.90602 0.92455 1.68924 1.19257 1.09878 1.22010 1.24117 0.86408 1.02145 0.99716 1.20106 0.91256 0.91253 0.95268 1.21054 0.96688 1.18455 1.19113 0.92429 1.25011 0.98757 0.95177 0.94639 1.69973 1.27563 1.32815 1.22074 0.86637 0.82839 0.81071 0.77705 1.20690 1.21190 1.19815 1.24003 0.99945 0.89399 1.00201 1.23668 0.97690 0.91825 0.99363 1.77251 0.96683 1.13062 1.26177 1.48291 1.03995 1.05688 1.58443 1.21742 1.00930 0.78295 1.02792 0.90734 0.87630 0.91500 0.91319 0.93867 0.92807 0.91970 0.91885 0.92914 0.92065 0.92876 0.80409 0.91259 0.89636 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.90 36.01 0.36 -1.16 16 2 C 0.09 1.49 6.93 -82.27 -0.57 0.92 16 3 C -0.21 -3.63 5.68 -105.05 -0.60 -4.23 16 4 C 0.10 1.68 4.95 -4.98 -0.02 1.65 16 5 N -0.48 -9.74 6.32 -246.11 -1.55 -11.29 16 6 C 0.00 0.11 5.21 -7.55 -0.04 0.07 16 7 C 0.04 1.00 3.76 -91.24 -0.34 0.65 16 8 C -0.51 -13.77 8.83 -34.44 -0.30 -14.08 16 9 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 10 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 11 N -0.89 -25.22 13.26 55.43 0.74 -24.48 16 12 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 C -0.01 -0.14 7.25 -7.55 -0.05 -0.20 16 17 C 0.06 0.97 11.96 -17.36 -0.21 0.76 16 18 N -0.31 -5.16 12.58 30.63 0.39 -4.78 16 19 N -0.38 -5.74 4.01 -63.88 -0.26 -5.99 16 20 C 0.10 1.05 11.27 59.85 0.67 1.73 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.11 1.72 3.90 -51.93 -0.20 1.52 16 23 H 0.07 0.79 7.07 -51.93 -0.37 0.43 16 24 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 25 H 0.04 0.75 7.29 -51.93 -0.38 0.37 16 26 H 0.05 1.18 6.61 -51.93 -0.34 0.84 16 27 H 0.06 1.45 7.66 -51.93 -0.40 1.05 16 28 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.07 7.87 -51.93 -0.41 0.67 16 32 H 0.18 2.34 8.06 -52.49 -0.42 1.91 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.71 7.04 -51.93 -0.37 0.35 16 LS Contribution 288.60 15.07 4.35 4.35 Total: -1.00 -30.58 288.60 -7.53 -38.11 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.96 Total: 0.55 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.21 Total: -12.15 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.69 Total: -46.55 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.58 -7.53 -38.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.464 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds