Wall clock time and date at job start Sun Mar 29 2020 21:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.50706 * 126.04281 * 359.97438 * 3 2 1 5 5 N 1.46890 * 109.47239 * 79.99626 * 4 3 2 6 6 C 1.47480 * 110.99935 * 265.97098 * 5 4 3 7 7 C 1.53511 * 87.93392 * 221.29681 * 6 5 4 8 8 C 1.50708 * 114.34316 * 139.68498 * 7 6 5 9 9 H 1.08004 * 119.99475 * 266.07976 * 8 7 6 10 10 C 1.37875 * 119.99955 * 86.07935 * 8 7 6 11 11 N 1.31516 * 120.00114 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99786 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47428 * 89.99998 * 12 10 8 14 14 H 1.48503 * 109.47200 * 209.99957 * 12 10 8 15 15 H 1.48500 * 109.47567 * 329.99708 * 12 10 8 16 16 C 1.47483 * 110.99937 * 170.00410 * 5 4 3 17 17 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 18 18 N 1.30836 * 108.19611 * 0.02562 * 17 3 2 19 19 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 20 20 C 1.46508 * 126.03491 * 0.04077 * 19 2 1 21 21 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 22 22 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 23 23 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 24 24 H 1.08997 * 109.46928 * 200.00020 * 4 3 2 25 25 H 1.08998 * 109.46315 * 319.99691 * 4 3 2 26 26 H 1.08998 * 113.47665 * 336.06817 * 6 5 4 27 27 H 1.09005 * 113.47298 * 106.53384 * 6 5 4 28 28 H 1.09004 * 114.17292 * 272.37763 * 7 6 5 29 29 H 0.96998 * 119.99755 * 180.02562 * 11 10 8 30 30 H 1.08999 * 113.47505 * 253.46991 * 16 5 4 31 31 H 1.09002 * 113.47568 * 23.87593 * 16 5 4 32 32 H 1.08001 * 125.89657 * 180.02562 * 17 3 2 33 33 H 1.08997 * 109.47057 * 89.99662 * 20 19 2 34 34 H 1.08995 * 109.46473 * 209.99727 * 20 19 2 35 35 H 1.09002 * 109.46903 * 329.99696 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5276 -0.0005 5 7 1.4638 2.9204 1.3630 6 6 0.0172 2.7360 1.5829 7 6 0.0174 4.0742 2.3353 8 6 -1.1801 4.9450 2.0544 9 1 -1.1297 5.7003 1.2840 10 6 -2.3399 4.7774 2.7808 11 7 -2.4011 3.8580 3.7192 12 14 -3.8244 5.8562 2.4322 13 1 -4.6731 5.2114 1.3982 14 1 -4.6116 6.0330 3.6789 15 1 -3.3688 7.1820 1.9423 16 6 1.2347 4.3748 1.4497 17 6 3.6335 0.6560 0.0006 18 7 3.6334 -0.6524 0.0004 19 7 2.3027 -1.0899 0.0060 20 6 1.8539 -2.4846 0.0127 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 2.6514 3.1691 -0.3519 25 1 0.9829 2.6321 -0.6615 26 1 -0.5677 2.7550 0.6633 27 1 -0.2202 1.8816 2.2168 28 1 0.2481 3.9891 3.3972 29 1 -3.2172 3.7398 4.2300 30 1 2.0292 4.9092 1.9705 31 1 0.9758 4.8312 0.4943 32 1 4.5084 1.2892 0.0011 33 1 1.7431 -2.8356 -1.0132 34 1 2.5896 -3.1003 0.5300 35 1 0.8951 -2.5552 0.5264 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597193871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:07 Heat of formation + Delta-G solvation = 91.157030 kcal Electronic energy + Delta-G solvation = -16550.791937 eV Core-core repulsion = 13971.865163 eV Total energy + Delta-G solvation = -2578.926774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.26223 -40.43605 -34.96605 -34.38288 -33.53652 -31.01485 -28.54240 -27.61006 -26.44767 -26.34174 -23.80768 -21.70414 -20.51524 -20.16141 -18.58054 -17.39293 -16.86732 -16.50159 -16.14460 -15.65849 -15.31363 -14.93690 -14.78848 -13.98202 -13.85854 -13.62830 -13.47617 -13.29705 -13.12369 -13.08582 -12.81473 -12.68731 -12.33934 -11.99568 -11.77017 -11.31280 -11.14093 -10.79609 -10.43578 -10.13964 -9.60993 -9.16346 -8.11005 -6.22047 0.91700 1.45236 1.46871 1.56938 1.68147 1.83107 2.46046 3.18367 3.54996 3.70466 3.80962 4.03864 4.23498 4.33521 4.36508 4.41735 4.50982 4.60577 4.64448 4.67443 4.71462 4.82270 4.93405 4.99978 5.05621 5.08762 5.24410 5.31957 5.63245 5.67994 5.76363 5.89904 6.16518 6.34768 6.50970 6.76641 6.87514 7.46341 8.98686 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.039343 B = 0.005831 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.509777 B = 4800.546858 C = 5219.190733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.089 3.911 3 C -0.242 4.242 4 C 0.102 3.898 5 N -0.482 5.482 6 C 0.027 3.973 7 C 0.017 3.983 8 C -0.527 4.527 9 H 0.060 0.940 10 C 0.016 3.984 11 N -0.923 5.923 12 Si 0.956 3.044 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.008 3.992 17 C 0.055 3.945 18 N -0.333 5.333 19 N -0.381 5.381 20 C 0.092 3.908 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.025 0.975 29 H 0.262 0.738 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.200 0.800 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -8.869 -9.357 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.040 4.040 3 C -0.254 4.254 4 C -0.027 4.027 5 N -0.204 5.204 6 C -0.102 4.102 7 C -0.002 4.002 8 C -0.565 4.565 9 H 0.078 0.922 10 C -0.183 4.183 11 N -0.562 5.562 12 Si 0.781 3.219 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.190 1.190 16 C -0.120 4.120 17 C -0.130 4.130 18 N -0.154 5.154 19 N -0.165 5.165 20 C -0.048 4.048 21 H 0.113 0.887 22 H 0.098 0.902 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.216 0.784 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.380 -10.524 -8.826 15.144 hybrid contribution -1.736 1.420 -0.352 2.270 sum 4.643 -9.104 -9.178 13.736 Atomic orbital electron populations 1.20789 0.86330 1.04951 1.04268 1.21169 0.95335 0.87241 1.00268 1.19831 0.92903 0.95268 1.17372 1.20820 0.99900 0.91527 0.90419 1.68877 1.17650 1.09295 1.24610 1.23793 0.87887 0.99653 0.98908 1.20074 0.92816 0.93298 0.94020 1.21374 0.97469 1.18618 1.19055 0.92152 1.25800 1.01640 0.96428 0.94451 1.70103 1.28339 1.34525 1.23209 0.85589 0.79262 0.79491 0.77517 1.19847 1.21226 1.19038 1.23840 0.98311 0.90143 0.99754 1.24034 0.98202 0.91969 0.98828 1.77200 0.97857 1.13417 1.26972 1.48668 1.03374 1.07092 1.57330 1.22136 1.01950 0.76070 1.04601 0.88671 0.90191 0.89559 0.89587 0.93729 0.92490 0.93886 0.95672 0.92937 0.91117 0.91707 0.78376 0.89176 0.88832 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.76 9.90 71.24 0.70 -2.05 16 2 C 0.09 2.69 6.93 41.40 0.29 2.97 16 3 C -0.24 -7.88 5.68 -20.14 -0.11 -7.99 16 4 C 0.10 3.40 4.95 85.56 0.42 3.83 16 5 N -0.48 -19.34 6.32 -932.54 -5.89 -25.23 16 6 C 0.03 1.20 5.21 83.57 0.44 1.63 16 7 C 0.02 0.86 3.76 -11.19 -0.04 0.82 16 8 C -0.53 -28.30 8.83 25.60 0.23 -28.07 16 9 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 10 C 0.02 0.87 5.46 84.65 0.46 1.33 16 11 N -0.92 -53.45 13.26 21.45 0.28 -53.16 16 12 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 14 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 16 C 0.01 0.34 7.25 83.57 0.61 0.94 16 17 C 0.05 1.68 11.96 85.24 1.02 2.70 16 18 N -0.33 -10.60 12.58 -57.02 -0.72 -11.32 16 19 N -0.38 -10.80 4.01 -356.02 -1.43 -12.23 16 20 C 0.09 1.64 11.27 127.77 1.44 3.08 16 21 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.08 2.55 3.90 -2.39 -0.01 2.54 16 23 H 0.09 1.87 7.07 -2.38 -0.02 1.85 16 24 H 0.09 2.54 8.08 -2.39 -0.02 2.52 16 25 H 0.04 1.47 7.29 -2.39 -0.02 1.45 16 26 H 0.06 2.50 6.61 -2.39 -0.02 2.48 16 27 H 0.04 2.06 7.66 -2.38 -0.02 2.04 16 28 H 0.03 1.44 8.11 -2.38 -0.02 1.42 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 30 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.06 2.52 7.87 -2.39 -0.02 2.50 16 32 H 0.20 4.89 8.06 -2.91 -0.02 4.86 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 1.45 7.04 -2.39 -0.02 1.43 16 Total: -1.00 -65.37 288.60 0.80 -64.57 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.07 Total: 13.80 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 5.45 Total: -20.81 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -7.75 Total: -101.94 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -65.37 0.80 -64.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.725 kcal (2) G-P(sol) polarization free energy of solvation -65.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds