Wall clock time and date at job start Sun Mar 29 2020 21:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30839 * 125.89228 * 2 1 4 4 N 1.40088 * 108.20154 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.03714 * 180.02562 * 4 3 2 6 6 C 1.34952 * 107.92509 * 359.75997 * 4 3 2 7 7 C 1.35319 * 107.74406 * 0.39000 * 6 4 3 8 8 C 1.50700 * 126.03888 * 179.87383 * 7 6 4 9 9 N 1.46895 * 109.47107 * 104.76089 * 8 7 6 10 10 C 1.47961 * 111.00093 * 184.70597 * 9 8 7 11 11 C 1.53933 * 86.17997 * 137.58698 * 10 9 8 12 12 C 1.50707 * 113.73679 * 221.82027 * 11 10 9 13 13 H 1.08000 * 119.99603 * 358.09916 * 12 11 10 14 14 C 1.37876 * 120.00089 * 178.10367 * 12 11 10 15 15 N 1.31520 * 119.99763 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99993 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47254 * 59.99522 * 16 14 12 18 18 H 1.48495 * 109.47247 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46780 * 299.99775 * 16 14 12 20 20 C 1.48299 * 111.00908 * 284.06315 * 9 8 7 21 21 H 1.09004 * 109.46760 * 274.84537 * 1 2 3 22 22 H 1.08994 * 109.47067 * 34.84142 * 1 2 3 23 23 H 1.08998 * 109.46805 * 154.84655 * 1 2 3 24 24 H 1.08992 * 109.47418 * 89.97782 * 5 4 3 25 25 H 1.09002 * 109.46767 * 209.97949 * 5 4 3 26 26 H 1.08999 * 109.46747 * 329.97360 * 5 4 3 27 27 H 1.07993 * 126.12621 * 180.23534 * 6 4 3 28 28 H 1.09005 * 109.46804 * 344.76755 * 8 7 6 29 29 H 1.08994 * 109.47166 * 224.76723 * 8 7 6 30 30 H 1.09004 * 113.75553 * 23.27470 * 10 9 8 31 31 H 1.09001 * 113.86539 * 251.91848 * 10 9 8 32 32 H 1.09003 * 113.73401 * 90.63837 * 11 10 9 33 33 H 0.97001 * 119.99496 * 180.02562 * 15 14 12 34 34 H 1.09001 * 113.85587 * 108.14569 * 20 9 8 35 35 H 1.08998 * 113.75657 * 336.68275 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6088 0.6343 -0.0006 5 6 4.7899 1.5010 -0.0003 6 6 3.6143 -0.7152 0.0044 7 6 2.3272 -1.1329 -0.0007 8 6 1.8600 -2.5657 -0.0005 9 7 1.3667 -2.9197 1.3371 10 6 1.0035 -4.3523 1.4064 11 6 1.6935 -4.3549 2.7824 12 6 2.5412 -5.5753 3.0338 13 1 2.5938 -6.3583 2.2918 14 6 3.2493 -5.6923 4.2109 15 7 3.1855 -4.7385 5.1143 16 14 4.2994 -7.2054 4.5228 17 1 5.3381 -7.3133 3.4670 18 1 4.9541 -7.0885 5.8505 19 1 3.4412 -8.4170 4.4985 20 6 2.4919 -3.1393 2.2779 21 1 -0.3633 0.0868 1.0240 22 1 -0.3633 0.8434 -0.5871 23 1 -0.3633 -0.9302 -0.4368 24 1 5.0828 1.7156 1.0274 25 1 5.6093 0.9986 -0.5143 26 1 4.5562 2.4336 -0.5138 27 1 4.4892 -1.3483 0.0089 28 1 2.6914 -3.2189 -0.2657 29 1 1.0570 -2.6861 -0.7276 30 1 1.5066 -4.9694 0.6618 31 1 -0.0704 -4.5333 1.4532 32 1 1.0223 -4.1259 3.6102 33 1 3.6841 -4.8207 5.9423 34 1 2.6060 -2.3498 3.0207 35 1 3.4292 -3.4022 1.7876 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:11 Heat of formation + Delta-G solvation = 107.445912 kcal Electronic energy + Delta-G solvation = -16439.602139 eV Core-core repulsion = 13861.381704 eV Total energy + Delta-G solvation = -2578.220435 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98550 -38.43447 -33.94556 -32.68015 -31.20600 -29.52516 -28.10629 -25.90529 -24.86300 -24.39212 -22.07665 -20.42392 -19.15831 -18.40681 -16.63537 -16.27735 -15.38800 -14.76842 -14.48747 -14.15161 -13.92114 -13.46752 -13.25658 -13.17782 -12.39476 -12.27500 -11.97872 -11.84617 -11.75325 -11.48788 -11.12908 -10.94912 -10.60011 -10.28250 -10.23442 -9.66578 -9.21470 -8.96380 -8.91490 -8.42605 -7.99767 -7.74260 -6.01883 -4.06333 2.12504 2.71857 3.05820 3.30569 3.35912 3.37953 4.42224 4.60810 5.00602 5.11675 5.16262 5.24448 5.28217 5.36309 5.51158 5.58664 5.85574 5.92932 6.08979 6.17545 6.20326 6.29176 6.44094 6.48382 6.62450 6.72814 6.89508 6.98662 7.23995 7.25084 7.35878 7.77040 7.96173 7.99671 8.20068 8.41563 8.96030 9.58102 11.07446 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031573 B = 0.006052 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.609317 B = 4625.579346 C = 5130.021041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.094 3.906 3 N -0.310 5.310 4 N -0.384 5.384 5 C 0.107 3.893 6 C 0.056 3.944 7 C -0.212 4.212 8 C 0.099 3.901 9 N -0.484 5.484 10 C -0.003 4.003 11 C 0.038 3.962 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.022 3.978 21 H 0.078 0.922 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.169 0.831 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 8.593 -10.577 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 N -0.133 5.133 4 N -0.166 5.166 5 C -0.035 4.035 6 C -0.090 4.090 7 C -0.223 4.223 8 C -0.030 4.030 9 N -0.207 5.207 10 C -0.132 4.132 11 C 0.019 3.981 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.107 4.107 21 H 0.097 0.903 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.186 0.814 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.800 10.529 -10.279 14.736 hybrid contribution 1.610 -2.177 0.020 2.707 sum 2.409 8.353 -10.258 13.446 Atomic orbital electron populations 1.20091 0.86751 1.02423 1.03035 1.22173 0.96847 0.90071 0.98198 1.77209 0.86388 1.22929 1.26804 1.48222 1.05384 1.04632 1.58379 1.21745 0.83857 0.94762 1.03107 1.22305 0.99355 0.84731 1.02620 1.19902 0.91420 0.96326 1.14692 1.20790 0.98036 0.89995 0.94200 1.68615 1.27393 1.19457 1.05231 1.24052 0.99786 0.88438 1.00920 1.20311 0.93560 0.93031 0.91238 1.21075 1.27578 1.04287 1.02635 0.92575 1.25010 0.96670 0.96066 0.95917 1.69969 1.41685 1.32665 1.08130 0.86706 0.80626 0.83609 0.77324 1.20344 1.21304 1.20159 1.23980 0.92476 0.99822 0.94400 0.90326 0.91888 0.90453 0.91067 0.89830 0.89731 0.81416 0.94390 0.91319 0.92872 0.91694 0.92482 0.92909 0.91995 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.30 36.01 0.37 -0.53 16 2 C 0.09 1.58 7.22 -82.40 -0.59 0.98 16 3 N -0.31 -5.32 12.58 33.67 0.42 -4.90 16 4 N -0.38 -5.75 4.01 -68.16 -0.27 -6.02 16 5 C 0.11 1.05 11.47 59.85 0.69 1.73 16 6 C 0.06 0.86 11.39 -17.22 -0.20 0.67 16 7 C -0.21 -3.62 5.31 -105.05 -0.56 -4.18 16 8 C 0.10 1.73 4.86 -4.98 -0.02 1.71 16 9 N -0.48 -9.91 6.22 -239.49 -1.49 -11.40 16 10 C 0.00 -0.07 7.54 -2.76 -0.02 -0.09 16 11 C 0.04 0.95 3.60 -90.83 -0.33 0.62 16 12 C -0.52 -14.09 8.77 -34.44 -0.30 -14.40 16 13 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 14 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 C 0.02 0.51 7.21 -2.57 -0.02 0.50 16 21 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 1.01 7.52 -51.93 -0.39 0.62 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 28 H 0.04 0.66 7.67 -51.93 -0.40 0.26 16 29 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 30 H 0.05 1.08 7.83 -51.93 -0.41 0.68 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.05 1.17 7.65 -51.93 -0.40 0.77 16 LS Contribution 297.80 15.07 4.49 4.49 Total: -1.00 -31.32 297.80 -7.56 -38.88 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.34 Total: -0.82 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.08 Total: -11.25 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.60 Total: -47.34 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.32 -7.56 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.329 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds