Wall clock time and date at job start Sun Mar 29 2020 21:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30839 * 125.89228 * 2 1 4 4 N 1.40088 * 108.20154 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.03714 * 180.02562 * 4 3 2 6 6 C 1.34952 * 107.92509 * 359.75997 * 4 3 2 7 7 C 1.35319 * 107.74406 * 0.39000 * 6 4 3 8 8 C 1.50700 * 126.03888 * 179.87383 * 7 6 4 9 9 N 1.46895 * 109.47107 * 104.76089 * 8 7 6 10 10 C 1.47961 * 111.00093 * 184.70597 * 9 8 7 11 11 C 1.53933 * 86.17997 * 137.58698 * 10 9 8 12 12 C 1.50707 * 113.73679 * 221.82027 * 11 10 9 13 13 H 1.08000 * 119.99603 * 358.09916 * 12 11 10 14 14 C 1.37876 * 120.00089 * 178.10367 * 12 11 10 15 15 N 1.31520 * 119.99763 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99993 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47254 * 59.99522 * 16 14 12 18 18 H 1.48495 * 109.47247 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46780 * 299.99775 * 16 14 12 20 20 C 1.48299 * 111.00908 * 284.06315 * 9 8 7 21 21 H 1.09004 * 109.46760 * 274.84537 * 1 2 3 22 22 H 1.08994 * 109.47067 * 34.84142 * 1 2 3 23 23 H 1.08998 * 109.46805 * 154.84655 * 1 2 3 24 24 H 1.08992 * 109.47418 * 89.97782 * 5 4 3 25 25 H 1.09002 * 109.46767 * 209.97949 * 5 4 3 26 26 H 1.08999 * 109.46747 * 329.97360 * 5 4 3 27 27 H 1.07993 * 126.12621 * 180.23534 * 6 4 3 28 28 H 1.09005 * 109.46804 * 344.76755 * 8 7 6 29 29 H 1.08994 * 109.47166 * 224.76723 * 8 7 6 30 30 H 1.09004 * 113.75553 * 23.27470 * 10 9 8 31 31 H 1.09001 * 113.86539 * 251.91848 * 10 9 8 32 32 H 1.09003 * 113.73401 * 90.63837 * 11 10 9 33 33 H 0.97001 * 119.99496 * 180.02562 * 15 14 12 34 34 H 1.09001 * 113.85587 * 108.14569 * 20 9 8 35 35 H 1.08998 * 113.75657 * 336.68275 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6088 0.6343 -0.0006 5 6 4.7899 1.5010 -0.0003 6 6 3.6143 -0.7152 0.0044 7 6 2.3272 -1.1329 -0.0007 8 6 1.8600 -2.5657 -0.0005 9 7 1.3667 -2.9197 1.3371 10 6 1.0035 -4.3523 1.4064 11 6 1.6935 -4.3549 2.7824 12 6 2.5412 -5.5753 3.0338 13 1 2.5938 -6.3583 2.2918 14 6 3.2493 -5.6923 4.2109 15 7 3.1855 -4.7385 5.1143 16 14 4.2994 -7.2054 4.5228 17 1 5.3381 -7.3133 3.4670 18 1 4.9541 -7.0885 5.8505 19 1 3.4412 -8.4170 4.4985 20 6 2.4919 -3.1393 2.2779 21 1 -0.3633 0.0868 1.0240 22 1 -0.3633 0.8434 -0.5871 23 1 -0.3633 -0.9302 -0.4368 24 1 5.0828 1.7156 1.0274 25 1 5.6093 0.9986 -0.5143 26 1 4.5562 2.4336 -0.5138 27 1 4.4892 -1.3483 0.0089 28 1 2.6914 -3.2189 -0.2657 29 1 1.0570 -2.6861 -0.7276 30 1 1.5066 -4.9694 0.6618 31 1 -0.0704 -4.5333 1.4532 32 1 1.0223 -4.1259 3.6102 33 1 3.6841 -4.8207 5.9423 34 1 2.6060 -2.3498 3.0207 35 1 3.4292 -3.4022 1.7876 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:10 Heat of formation + Delta-G solvation = 86.022106 kcal Electronic energy + Delta-G solvation = -16440.531145 eV Core-core repulsion = 13861.381704 eV Total energy + Delta-G solvation = -2579.149441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.18418 -40.16544 -35.18341 -34.55451 -32.66495 -30.60185 -29.63733 -27.50026 -26.62337 -25.77603 -23.68064 -21.64472 -20.52331 -20.13716 -18.58084 -17.48219 -16.72952 -16.43692 -16.25540 -15.57717 -15.40884 -14.82939 -14.46861 -14.25807 -13.83397 -13.58784 -13.49533 -13.16318 -12.97210 -12.90118 -12.88171 -12.79055 -12.37438 -11.96411 -11.72759 -11.33074 -11.11434 -10.89152 -10.48955 -10.11419 -9.48511 -9.21059 -8.11602 -6.23307 0.93942 1.44083 1.45633 1.53390 1.70431 1.79799 2.44636 3.18008 3.42443 3.66834 3.93578 4.18737 4.26534 4.37695 4.41706 4.47492 4.53878 4.65326 4.66641 4.72347 4.82870 4.88878 4.96672 5.09131 5.09708 5.14421 5.21021 5.29693 5.65691 5.67047 5.82265 5.89852 6.16523 6.34091 6.50807 6.79648 6.86219 7.45103 8.97564 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031573 B = 0.006052 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.609317 B = 4625.579346 C = 5130.021041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.079 3.921 3 N -0.337 5.337 4 N -0.383 5.383 5 C 0.096 3.904 6 C 0.057 3.943 7 C -0.241 4.241 8 C 0.105 3.895 9 N -0.482 5.482 10 C 0.013 3.987 11 C 0.018 3.982 12 C -0.530 4.530 13 H 0.061 0.939 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.957 3.043 17 H -0.268 1.268 18 H -0.287 1.287 19 H -0.269 1.269 20 C 0.038 3.962 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.191 0.809 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.020 0.980 33 H 0.261 0.739 34 H 0.033 0.967 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 8.148 -12.041 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 N -0.161 5.161 4 N -0.165 5.165 5 C -0.044 4.044 6 C -0.090 4.090 7 C -0.253 4.253 8 C -0.024 4.024 9 N -0.204 5.204 10 C -0.115 4.115 11 C -0.002 4.002 12 C -0.568 4.568 13 H 0.079 0.921 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.782 3.218 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.194 1.194 20 C -0.091 4.091 21 H 0.089 0.911 22 H 0.097 0.903 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.132 0.868 26 H 0.114 0.886 27 H 0.208 0.792 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.635 10.100 -11.764 15.591 hybrid contribution 1.366 -1.967 0.458 2.438 sum 3.001 8.133 -11.307 14.247 Atomic orbital electron populations 1.20139 0.85400 1.03600 1.02934 1.22580 0.98032 0.90005 0.98049 1.77146 0.87624 1.23574 1.27772 1.48642 1.05800 1.05077 1.56993 1.22148 0.82997 0.95045 1.04187 1.22704 0.99735 0.85371 1.01217 1.20003 0.92335 0.96124 1.16793 1.20768 0.98762 0.90456 0.92423 1.68551 1.26031 1.19038 1.06822 1.23915 1.00438 0.88939 0.98215 1.20307 0.93967 0.93455 0.92426 1.21432 1.27565 1.04947 1.02865 0.92105 1.25835 0.98016 0.98988 0.95743 1.70113 1.42852 1.34746 1.08617 0.85634 0.79020 0.79932 0.77214 1.19288 1.21308 1.19386 1.23637 0.93070 0.97855 0.94585 0.91053 0.90254 0.89656 0.90443 0.86793 0.88645 0.79198 0.94042 0.89434 0.91695 0.90181 0.96177 0.93021 0.94794 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 10.30 71.24 0.73 -0.94 16 2 C 0.08 2.60 7.22 43.10 0.31 2.91 16 3 N -0.34 -11.26 12.58 -47.38 -0.60 -11.86 16 4 N -0.38 -10.86 4.01 -369.57 -1.48 -12.34 16 5 C 0.10 1.66 11.47 127.77 1.47 3.13 16 6 C 0.06 1.68 11.39 83.54 0.95 2.63 16 7 C -0.24 -7.92 5.31 -20.14 -0.11 -8.03 16 8 C 0.10 3.47 4.86 85.56 0.42 3.89 16 9 N -0.48 -19.33 6.22 -911.61 -5.67 -25.00 16 10 C 0.01 0.55 7.54 86.41 0.65 1.20 16 11 C 0.02 0.90 3.60 -10.89 -0.04 0.86 16 12 C -0.53 -28.83 8.77 25.60 0.22 -28.61 16 13 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 14 C 0.01 0.73 5.46 84.65 0.46 1.19 16 15 N -0.92 -54.67 13.29 21.45 0.28 -54.38 16 16 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.04 1.78 7.21 86.35 0.62 2.41 16 21 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 22 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.08 2.10 7.52 -2.39 -0.02 2.09 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.19 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.04 1.35 7.67 -2.38 -0.02 1.33 16 29 H 0.09 2.57 7.75 -2.39 -0.02 2.55 16 30 H 0.06 2.51 7.83 -2.39 -0.02 2.49 16 31 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 2.28 7.65 -2.39 -0.02 2.26 16 Total: -1.00 -67.27 297.80 1.31 -65.96 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.06 Total: 12.01 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 5.69 Total: -19.37 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -7.46 Total: -103.58 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -67.27 1.31 -65.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.978 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds