Wall clock time and date at job start Sun Mar 29 2020 21:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32161 * 119.99832 * 2 1 4 4 C 1.32126 * 119.99625 * 179.97438 * 3 2 1 5 5 C 1.38386 * 120.00231 * 0.02562 * 4 3 2 6 6 N 1.32123 * 119.99527 * 0.02562 * 5 4 3 7 7 C 1.32148 * 120.00268 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00050 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.46995 * 264.08122 * 8 7 6 10 10 C 1.46909 * 110.99575 * 75.64863 * 9 8 7 11 11 C 1.46902 * 111.00087 * 199.60110 * 9 8 7 12 12 H 1.09001 * 109.46809 * 55.00125 * 11 9 8 13 13 C 1.53000 * 109.47303 * 295.00129 * 11 9 8 14 14 C 1.50695 * 109.46801 * 175.00156 * 11 9 8 15 15 H 1.07996 * 120.00522 * 0.02562 * 14 11 9 16 16 C 1.37881 * 119.99978 * 180.02562 * 14 11 9 17 17 N 1.31517 * 119.99766 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00321 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.46907 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47155 * 119.99712 * 18 16 14 21 21 H 1.48494 * 109.47314 * 239.99822 * 18 16 14 22 22 H 1.09006 * 109.46872 * 95.62333 * 1 2 3 23 23 H 1.09001 * 109.47266 * 215.62094 * 1 2 3 24 24 H 1.09000 * 109.47378 * 335.62444 * 1 2 3 25 25 H 1.08005 * 119.99366 * 180.02562 * 4 3 2 26 26 H 1.08000 * 120.00235 * 179.97438 * 5 4 3 27 27 H 1.08997 * 109.47555 * 24.08307 * 8 7 6 28 28 H 1.08995 * 109.47398 * 144.08597 * 8 7 6 29 29 H 1.08997 * 109.46723 * 54.29763 * 10 9 8 30 30 H 1.09005 * 109.46623 * 174.28906 * 10 9 8 31 31 H 1.08997 * 109.47098 * 294.29356 * 10 9 8 32 32 H 1.08998 * 109.47030 * 300.00515 * 13 11 9 33 33 H 1.09003 * 109.46987 * 59.99948 * 13 11 9 34 34 H 1.09000 * 109.47212 * 179.97438 * 13 11 9 35 35 H 0.97000 * 120.00183 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4890 1.1445 0.0005 5 6 4.1809 -0.0539 0.0005 6 7 3.5202 -1.1981 -0.0005 7 6 2.1988 -1.1981 -0.0010 8 6 1.4452 -2.5031 -0.0028 9 7 1.0772 -2.8542 -1.3809 10 6 2.2402 -3.3572 -2.1244 11 6 -0.0218 -3.8288 -1.4004 12 1 -0.8631 -3.4392 -0.8272 13 6 0.4523 -5.1446 -0.7800 14 6 -0.4529 -4.0712 -2.8239 15 1 0.0403 -3.5535 -3.6332 16 6 -1.4772 -4.9541 -3.0931 17 7 -2.0776 -5.5850 -2.1076 18 14 -2.0113 -5.2552 -4.8576 19 1 -1.1832 -4.4297 -5.7730 20 1 -1.8349 -6.6919 -5.1898 21 1 -3.4404 -4.8831 -5.0126 22 1 -0.3633 -0.1007 -1.0228 23 1 -0.3634 -0.8354 0.5985 24 1 -0.3634 0.9360 0.4241 25 1 4.0290 2.0799 0.0009 26 1 5.2609 -0.0540 0.0005 27 1 2.0758 -3.2874 0.4159 28 1 0.5425 -2.4023 0.5997 29 1 2.6919 -4.1840 -1.5763 30 1 1.9207 -3.7042 -3.1071 31 1 2.9706 -2.5567 -2.2414 32 1 1.2936 -5.5341 -1.3531 33 1 0.7642 -4.9692 0.2496 34 1 -0.3633 -5.8676 -0.7940 35 1 -2.7980 -6.2063 -2.2970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598671143.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:39 Heat of formation + Delta-G solvation = 52.229141 kcal Electronic energy + Delta-G solvation = -16800.800857 eV Core-core repulsion = 14220.186044 eV Total energy + Delta-G solvation = -2580.614813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94794 -37.25881 -34.28957 -33.49035 -32.18182 -28.92874 -27.80829 -27.16044 -25.18820 -24.29945 -22.75648 -21.92533 -19.29665 -17.56385 -16.44363 -16.03471 -15.52333 -15.12551 -14.68832 -14.05633 -13.69654 -13.51052 -12.78393 -12.59187 -12.49649 -12.30598 -11.92022 -11.41654 -11.37199 -11.14211 -11.03141 -10.85067 -10.71425 -10.62345 -10.49205 -10.03587 -9.90310 -8.96804 -8.84607 -8.74351 -8.41611 -7.24837 -6.03941 -4.07467 0.99555 1.35633 3.28783 3.37033 3.41508 3.85054 4.23713 4.36715 4.42349 4.70792 4.94600 5.19690 5.28674 5.33118 5.42110 5.58877 5.81472 5.91794 6.08088 6.16950 6.28113 6.31375 6.43126 6.64230 6.69761 6.82529 6.90032 7.08614 7.41175 7.51656 7.68896 7.79580 8.01446 8.07103 8.33865 8.53251 8.98435 9.57669 11.03162 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038158 B = 0.006321 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.613050 B = 4428.562253 C = 4542.052440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.101 3.899 3 N -0.446 5.446 4 C 0.038 3.962 5 C 0.035 3.965 6 N -0.435 5.435 7 C 0.105 3.895 8 C 0.100 3.900 9 N -0.527 5.527 10 C 0.039 3.961 11 C 0.212 3.788 12 H 0.042 0.958 13 C -0.173 4.173 14 C -0.499 4.499 15 H 0.063 0.937 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.163 0.837 26 H 0.163 0.837 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.030 0.970 33 H 0.007 0.993 34 H 0.089 0.911 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 8.806 4.906 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.040 4.040 3 N -0.162 5.162 4 C -0.122 4.122 5 C -0.125 4.125 6 N -0.150 5.150 7 C -0.037 4.037 8 C -0.029 4.029 9 N -0.251 5.251 10 C -0.110 4.110 11 C 0.106 3.894 12 H 0.060 0.940 13 C -0.232 4.232 14 C -0.538 4.538 15 H 0.081 0.919 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.210 1.210 22 H 0.112 0.888 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.180 0.820 26 H 0.180 0.820 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.026 0.974 34 H 0.107 0.893 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.704 9.095 4.694 12.811 hybrid contribution 0.233 -0.914 -0.549 1.091 sum 7.937 8.181 4.146 12.129 Atomic orbital electron populations 1.20729 0.87395 1.02884 1.04595 1.22124 0.98640 0.88651 0.94567 1.68288 1.08811 1.29503 1.09594 1.23616 0.91027 0.99515 0.98019 1.23638 1.01520 0.89043 0.98300 1.68297 1.08691 1.29644 1.08374 1.22263 0.89974 0.97091 0.94344 1.20928 0.97631 0.90529 0.93810 1.62294 1.08601 1.45155 1.09076 1.22216 0.92086 0.97016 0.99634 1.19375 0.87310 0.85594 0.97125 0.94031 1.22427 1.01696 1.03458 0.95646 1.21131 1.17070 1.23759 0.91845 0.91864 1.24912 0.96263 0.95824 0.97195 1.69889 1.24224 1.28443 1.30725 0.86475 0.78451 0.77818 0.84871 1.19789 1.21175 1.21037 0.88776 0.90010 0.91141 0.82010 0.82027 0.93323 0.89361 0.96355 0.90521 0.94225 0.95045 0.97362 0.89284 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.66 36.00 0.35 -1.08 16 2 C 0.10 1.64 6.79 -82.41 -0.56 1.08 16 3 N -0.45 -6.88 10.42 -9.28 -0.10 -6.97 16 4 C 0.04 0.48 11.23 -17.37 -0.19 0.29 16 5 C 0.03 0.45 11.23 -17.37 -0.20 0.25 16 6 N -0.43 -7.14 10.17 -9.29 -0.09 -7.24 16 7 C 0.10 1.80 5.77 -82.42 -0.48 1.32 16 8 C 0.10 1.83 3.93 -4.97 -0.02 1.81 16 9 N -0.53 -11.08 4.66 -237.72 -1.11 -12.19 16 10 C 0.04 0.80 8.52 60.07 0.51 1.31 16 11 C 0.21 5.10 2.31 -68.87 -0.16 4.94 16 12 H 0.04 1.07 7.95 -51.93 -0.41 0.66 16 13 C -0.17 -4.07 8.32 37.16 0.31 -3.76 16 14 C -0.50 -13.25 7.80 -34.44 -0.27 -13.52 16 15 H 0.06 1.70 6.81 -52.49 -0.36 1.35 16 16 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 17 N -0.89 -24.75 11.32 55.43 0.63 -24.13 16 18 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 23 H 0.08 1.14 6.28 -51.93 -0.33 0.81 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 26 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.05 0.91 7.23 -51.93 -0.38 0.53 16 28 H 0.09 1.52 5.96 -51.93 -0.31 1.21 16 29 H 0.02 0.37 6.67 -51.93 -0.35 0.02 16 30 H 0.08 1.66 6.28 -51.93 -0.33 1.34 16 31 H 0.04 0.77 7.55 -51.93 -0.39 0.38 16 32 H 0.03 0.72 6.61 -51.93 -0.34 0.38 16 33 H 0.01 0.16 6.99 -51.93 -0.36 -0.20 16 34 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 283.41 15.07 4.27 4.27 Total: -1.00 -29.12 283.41 -6.91 -36.03 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.69 Total: 0.10 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.80 Total: -5.87 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.67 Total: -50.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.12 -6.91 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598671143.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.260 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds