Wall clock time and date at job start Sun Mar 29 2020 21:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32161 * 119.99832 * 2 1 4 4 C 1.32126 * 119.99625 * 179.97438 * 3 2 1 5 5 C 1.38386 * 120.00231 * 0.02562 * 4 3 2 6 6 N 1.32123 * 119.99527 * 0.02562 * 5 4 3 7 7 C 1.32148 * 120.00268 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00050 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.46995 * 264.08122 * 8 7 6 10 10 C 1.46909 * 110.99575 * 75.64863 * 9 8 7 11 11 C 1.46902 * 111.00087 * 199.60110 * 9 8 7 12 12 H 1.09001 * 109.46809 * 55.00125 * 11 9 8 13 13 C 1.53000 * 109.47303 * 295.00129 * 11 9 8 14 14 C 1.50695 * 109.46801 * 175.00156 * 11 9 8 15 15 H 1.07996 * 120.00522 * 0.02562 * 14 11 9 16 16 C 1.37881 * 119.99978 * 180.02562 * 14 11 9 17 17 N 1.31517 * 119.99766 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00321 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.46907 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47155 * 119.99712 * 18 16 14 21 21 H 1.48494 * 109.47314 * 239.99822 * 18 16 14 22 22 H 1.09006 * 109.46872 * 95.62333 * 1 2 3 23 23 H 1.09001 * 109.47266 * 215.62094 * 1 2 3 24 24 H 1.09000 * 109.47378 * 335.62444 * 1 2 3 25 25 H 1.08005 * 119.99366 * 180.02562 * 4 3 2 26 26 H 1.08000 * 120.00235 * 179.97438 * 5 4 3 27 27 H 1.08997 * 109.47555 * 24.08307 * 8 7 6 28 28 H 1.08995 * 109.47398 * 144.08597 * 8 7 6 29 29 H 1.08997 * 109.46723 * 54.29763 * 10 9 8 30 30 H 1.09005 * 109.46623 * 174.28906 * 10 9 8 31 31 H 1.08997 * 109.47098 * 294.29356 * 10 9 8 32 32 H 1.08998 * 109.47030 * 300.00515 * 13 11 9 33 33 H 1.09003 * 109.46987 * 59.99948 * 13 11 9 34 34 H 1.09000 * 109.47212 * 179.97438 * 13 11 9 35 35 H 0.97000 * 120.00183 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4890 1.1445 0.0005 5 6 4.1809 -0.0539 0.0005 6 7 3.5202 -1.1981 -0.0005 7 6 2.1988 -1.1981 -0.0010 8 6 1.4452 -2.5031 -0.0028 9 7 1.0772 -2.8542 -1.3809 10 6 2.2402 -3.3572 -2.1244 11 6 -0.0218 -3.8288 -1.4004 12 1 -0.8631 -3.4392 -0.8272 13 6 0.4523 -5.1446 -0.7800 14 6 -0.4529 -4.0712 -2.8239 15 1 0.0403 -3.5535 -3.6332 16 6 -1.4772 -4.9541 -3.0931 17 7 -2.0776 -5.5850 -2.1076 18 14 -2.0113 -5.2552 -4.8576 19 1 -1.1832 -4.4297 -5.7730 20 1 -1.8349 -6.6919 -5.1898 21 1 -3.4404 -4.8831 -5.0126 22 1 -0.3633 -0.1007 -1.0228 23 1 -0.3634 -0.8354 0.5985 24 1 -0.3634 0.9360 0.4241 25 1 4.0290 2.0799 0.0009 26 1 5.2609 -0.0540 0.0005 27 1 2.0758 -3.2874 0.4159 28 1 0.5425 -2.4023 0.5997 29 1 2.6919 -4.1840 -1.5763 30 1 1.9207 -3.7042 -3.1071 31 1 2.9706 -2.5567 -2.2414 32 1 1.2936 -5.5341 -1.3531 33 1 0.7642 -4.9692 0.2496 34 1 -0.3633 -5.8676 -0.7940 35 1 -2.7980 -6.2063 -2.2970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598671143.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:39 Heat of formation + Delta-G solvation = 32.283580 kcal Electronic energy + Delta-G solvation = -16801.665762 eV Core-core repulsion = 14220.186044 eV Total energy + Delta-G solvation = -2581.479718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.09384 -38.94564 -35.48700 -35.07703 -33.78397 -30.69345 -29.10747 -28.53937 -27.19352 -25.85863 -23.97706 -23.27677 -21.08020 -18.72817 -18.27018 -17.37484 -17.03290 -16.39477 -16.29981 -15.58968 -15.31577 -15.02719 -14.31046 -14.12702 -13.75615 -13.56740 -13.45584 -13.09130 -12.93800 -12.69507 -12.67040 -12.52494 -12.49628 -12.20917 -11.99435 -11.88865 -11.73186 -10.90819 -10.47606 -9.98754 -9.93865 -8.93831 -8.09232 -6.18913 -0.11595 0.21832 1.42399 1.45309 1.55942 2.43964 2.71034 3.13605 3.20584 3.26792 3.59737 3.62973 3.85504 4.16920 4.36524 4.50047 4.54466 4.58808 4.62732 4.75555 4.77973 4.87524 4.91043 4.95045 5.13550 5.16060 5.19788 5.53782 5.56181 5.71783 5.79083 6.16308 6.37918 6.47159 6.67590 6.91299 6.93686 7.49761 8.97029 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038158 B = 0.006321 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.613050 B = 4428.562253 C = 4542.052440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.086 3.914 3 N -0.463 5.463 4 C 0.050 3.950 5 C 0.039 3.961 6 N -0.458 5.458 7 C 0.081 3.919 8 C 0.108 3.892 9 N -0.532 5.532 10 C 0.050 3.950 11 C 0.218 3.782 12 H 0.020 0.980 13 C -0.160 4.160 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.918 5.918 18 Si 0.955 3.045 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.207 0.793 26 H 0.204 0.796 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.018 0.982 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.507 10.189 4.812 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.053 4.053 3 N -0.179 5.179 4 C -0.110 4.110 5 C -0.121 4.121 6 N -0.173 5.173 7 C -0.058 4.058 8 C -0.022 4.022 9 N -0.255 5.255 10 C -0.098 4.098 11 C 0.111 3.889 12 H 0.038 0.962 13 C -0.219 4.219 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.183 4.183 17 N -0.558 5.558 18 Si 0.781 3.219 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.207 1.207 22 H 0.096 0.904 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.224 0.776 26 H 0.220 0.780 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.168 10.469 4.605 14.658 hybrid contribution -0.083 -1.224 -0.470 1.314 sum 9.085 9.245 4.135 13.606 Atomic orbital electron populations 1.20671 0.87120 1.03731 1.03628 1.22180 0.99103 0.88780 0.95206 1.68350 1.10355 1.28976 1.10205 1.24397 0.90186 1.01333 0.95130 1.24355 1.03335 0.88103 0.96337 1.68246 1.08417 1.31666 1.08999 1.21934 0.90563 0.96440 0.96901 1.20829 0.97965 0.91409 0.91952 1.62172 1.08254 1.43952 1.11168 1.22080 0.91878 0.97264 0.98589 1.19130 0.87815 0.86312 0.95631 0.96217 1.22238 1.00482 1.02462 0.96723 1.21360 1.17226 1.23704 0.92817 0.92740 1.25603 0.96379 0.95702 1.00666 1.70000 1.24574 1.28857 1.32345 0.85549 0.77991 0.77638 0.80680 1.19571 1.20813 1.20674 0.90426 0.90088 0.89550 0.77591 0.77968 0.93940 0.89063 0.96352 0.92230 0.93183 0.95300 0.95498 0.91790 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.73 9.66 71.24 0.69 -2.04 16 2 C 0.09 2.72 6.79 42.53 0.29 3.01 16 3 N -0.46 -13.22 10.42 -183.29 -1.91 -15.13 16 4 C 0.05 1.08 11.23 84.68 0.95 2.03 16 5 C 0.04 0.88 11.23 84.68 0.95 1.83 16 6 N -0.46 -14.14 10.17 -183.30 -1.86 -16.01 16 7 C 0.08 2.72 5.77 42.54 0.25 2.97 16 8 C 0.11 3.93 3.93 85.56 0.34 4.26 16 9 N -0.53 -22.53 4.66 -906.02 -4.22 -26.76 16 10 C 0.05 2.05 8.52 127.69 1.09 3.14 16 11 C 0.22 10.69 2.31 44.17 0.10 10.79 16 12 H 0.02 1.06 7.95 -2.39 -0.02 1.04 16 13 C -0.16 -7.61 8.32 71.98 0.60 -7.01 16 14 C -0.51 -27.60 7.80 25.60 0.20 -27.40 16 15 H 0.05 2.97 6.81 -2.91 -0.02 2.96 16 16 C 0.02 0.82 5.30 84.66 0.45 1.27 16 17 N -0.92 -51.52 11.32 21.45 0.24 -51.28 16 18 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 23 H 0.08 2.30 6.28 -2.39 -0.01 2.29 16 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 26 H 0.20 2.73 8.06 -2.91 -0.02 2.70 16 27 H 0.04 1.58 7.23 -2.39 -0.02 1.57 16 28 H 0.09 3.20 5.96 -2.39 -0.01 3.19 16 29 H 0.02 0.73 6.67 -2.39 -0.02 0.71 16 30 H 0.06 2.60 6.28 -2.38 -0.01 2.59 16 31 H 0.05 1.91 7.55 -2.39 -0.02 1.89 16 32 H 0.03 1.34 6.61 -2.39 -0.02 1.32 16 33 H 0.03 1.13 6.99 -2.39 -0.02 1.11 16 34 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 35 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -62.32 283.41 1.25 -61.07 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.08 Total: 9.92 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.90 Total: -7.14 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -7.76 Total: -109.17 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -62.32 1.25 -61.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598671143.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.352 kcal (2) G-P(sol) polarization free energy of solvation -62.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds