Wall clock time and date at job start Sun Mar 29 2020 21:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32154 * 119.99714 * 2 1 4 4 C 1.32121 * 119.99800 * 180.27655 * 3 2 1 5 5 C 1.38393 * 120.00242 * 359.73774 * 4 3 2 6 6 N 1.32132 * 119.99092 * 359.97438 * 5 4 3 7 7 C 1.32149 * 120.00217 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99867 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.46796 * 89.99847 * 8 7 6 10 10 C 1.46902 * 111.00283 * 66.04964 * 9 8 7 11 11 C 1.46906 * 110.99888 * 189.99926 * 9 8 7 12 12 H 1.09000 * 109.47033 * 300.00113 * 11 9 8 13 13 C 1.52997 * 109.46907 * 59.99949 * 11 9 8 14 14 C 1.50699 * 109.47140 * 180.02562 * 11 9 8 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 11 9 17 17 N 1.31522 * 119.99835 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00496 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47183 * 60.00274 * 18 16 14 20 20 H 1.48496 * 109.47425 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47216 * 300.00267 * 18 16 14 22 22 H 1.09000 * 109.46937 * 270.24083 * 1 2 3 23 23 H 1.08994 * 109.47424 * 30.23988 * 1 2 3 24 24 H 1.09001 * 109.46988 * 150.24120 * 1 2 3 25 25 H 1.08001 * 120.00387 * 179.75692 * 4 3 2 26 26 H 1.07991 * 120.00637 * 179.97438 * 5 4 3 27 27 H 1.08999 * 109.47012 * 330.00278 * 8 7 6 28 28 H 1.08996 * 109.47316 * 209.99549 * 8 7 6 29 29 H 1.09004 * 109.47457 * 183.95363 * 10 9 8 30 30 H 1.09001 * 109.46615 * 303.95014 * 10 9 8 31 31 H 1.08990 * 109.47358 * 63.94680 * 10 9 8 32 32 H 1.09001 * 109.47230 * 179.97438 * 13 11 9 33 33 H 1.09001 * 109.47375 * 300.00212 * 13 11 9 34 34 H 1.09000 * 109.47140 * 60.00230 * 13 11 9 35 35 H 0.96992 * 120.00038 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 -0.0055 5 6 4.1810 -0.0539 -0.0058 6 7 3.5202 -1.1982 -0.0001 7 6 2.1988 -1.1981 0.0055 8 6 1.4452 -2.5032 0.0114 9 7 1.2063 -2.9242 1.3983 10 6 0.2984 -1.9934 2.0821 11 6 0.6882 -4.2979 1.4497 12 1 -0.2520 -4.3524 0.9009 13 6 1.7044 -5.2501 0.8161 14 6 0.4552 -4.6936 2.8850 15 1 0.6708 -3.9947 3.6796 16 6 -0.0332 -5.9478 3.1838 17 7 -0.2953 -6.7991 2.2161 18 14 -0.3214 -6.4386 4.9629 19 1 -1.3072 -5.5139 5.5780 20 1 -0.8451 -7.8272 5.0148 21 1 0.9597 -6.3651 5.7104 22 1 -0.3633 0.0043 1.0277 23 1 -0.3634 0.8878 -0.5175 24 1 -0.3633 -0.8922 -0.5101 25 1 4.0290 2.0798 -0.0095 26 1 5.2609 -0.0540 -0.0108 27 1 2.0322 -3.2639 -0.5032 28 1 0.4907 -2.3739 -0.4986 29 1 0.1940 -2.2887 3.1262 30 1 0.7059 -0.9838 2.0292 31 1 -0.6780 -2.0169 1.5984 32 1 1.3203 -6.2695 0.8545 33 1 1.8726 -4.9637 -0.2221 34 1 2.6446 -5.1956 1.3648 35 1 -0.6392 -7.6813 2.4262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598671144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:42 Heat of formation + Delta-G solvation = 38.655061 kcal Electronic energy + Delta-G solvation = -16822.351731 eV Core-core repulsion = 14241.148301 eV Total energy + Delta-G solvation = -2581.203430 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.19459 -38.86037 -35.49489 -35.31543 -33.63476 -30.95672 -29.92486 -28.41751 -26.84704 -25.53665 -24.01625 -23.21411 -21.22589 -18.80369 -18.42208 -17.41996 -17.07740 -16.53248 -16.32363 -15.85413 -15.16992 -15.05070 -14.48077 -14.00665 -13.90846 -13.73140 -13.51307 -12.97558 -12.83310 -12.76990 -12.64689 -12.55976 -12.39244 -12.10092 -11.97504 -11.86292 -11.71616 -10.91073 -10.51907 -9.99534 -9.95403 -8.93566 -8.10585 -6.22160 -0.16469 0.20243 1.43120 1.44992 1.52321 2.42309 2.69237 3.12497 3.17779 3.23850 3.45292 3.58386 3.82995 4.14585 4.33977 4.40448 4.47737 4.54367 4.58147 4.68863 4.72941 4.81744 4.95373 4.99420 5.04154 5.13358 5.24498 5.48947 5.50815 5.71571 5.76834 6.24718 6.35837 6.39226 6.67368 6.89866 6.91332 7.46534 8.95175 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040629 B = 0.006201 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.999718 B = 4514.199587 C = 4654.610025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.074 3.926 3 N -0.458 5.458 4 C 0.051 3.949 5 C 0.041 3.959 6 N -0.455 5.455 7 C 0.084 3.916 8 C 0.099 3.901 9 N -0.538 5.538 10 C 0.037 3.963 11 C 0.220 3.780 12 H -0.026 1.026 13 C -0.122 4.122 14 C -0.521 4.521 15 H 0.057 0.943 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.959 3.041 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.276 1.276 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.209 0.791 26 H 0.202 0.798 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.025 0.975 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 14.027 -4.994 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.065 4.065 3 N -0.173 5.173 4 C -0.110 4.110 5 C -0.120 4.120 6 N -0.170 5.170 7 C -0.056 4.056 8 C -0.030 4.030 9 N -0.263 5.263 10 C -0.111 4.111 11 C 0.113 3.887 12 H -0.008 1.008 13 C -0.180 4.180 14 C -0.559 4.559 15 H 0.075 0.925 16 C -0.185 4.185 17 N -0.558 5.558 18 Si 0.784 3.216 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.201 1.201 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.100 0.900 25 H 0.226 0.774 26 H 0.219 0.781 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.725 13.817 -4.775 15.363 hybrid contribution -0.788 -0.693 0.447 1.140 sum 3.937 13.124 -4.328 14.369 Atomic orbital electron populations 1.21075 0.86949 1.04337 1.04289 1.22246 0.99179 0.88769 0.96305 1.68338 1.10239 1.28714 1.10028 1.24401 0.90235 1.01227 0.95112 1.24405 1.03430 0.88127 0.96029 1.68241 1.08720 1.31686 1.08373 1.21911 0.90819 0.96100 0.96808 1.20959 0.97856 0.92430 0.91722 1.62034 1.47901 1.03600 1.12812 1.22468 0.93793 0.95140 0.99662 1.19053 0.90789 0.83451 0.95390 1.00820 1.21681 0.98121 1.01741 0.96428 1.21359 1.42630 0.99351 0.92548 0.92493 1.25667 0.95278 0.96368 1.01172 1.70000 1.45456 1.07216 1.33102 0.85606 0.78435 0.77230 0.80309 1.19544 1.20850 1.20100 0.89117 0.89016 0.90036 0.77395 0.78148 0.90077 0.92335 0.92497 0.91875 0.95495 0.91869 0.95080 0.95539 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 8.33 71.24 0.59 -2.10 16 2 C 0.07 2.18 5.79 42.54 0.25 2.43 16 3 N -0.46 -12.31 10.42 -183.29 -1.91 -14.22 16 4 C 0.05 1.08 11.23 84.69 0.95 2.03 16 5 C 0.04 0.95 11.23 84.68 0.95 1.90 16 6 N -0.46 -14.97 10.42 -183.29 -1.91 -16.88 16 7 C 0.08 2.81 5.79 42.54 0.25 3.05 16 8 C 0.10 3.69 4.90 85.56 0.42 4.11 16 9 N -0.54 -23.48 4.61 -906.05 -4.18 -27.66 16 10 C 0.04 1.45 7.45 127.69 0.95 2.40 16 11 C 0.22 11.21 2.06 44.17 0.09 11.31 16 12 H -0.03 -1.42 8.14 -2.39 -0.02 -1.44 16 13 C -0.12 -6.10 8.77 71.98 0.63 -5.46 16 14 C -0.52 -28.72 7.93 25.60 0.20 -28.51 16 15 H 0.06 3.14 6.39 -2.91 -0.02 3.12 16 16 C 0.01 0.78 5.30 84.65 0.45 1.22 16 17 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 18 Si 0.96 43.71 29.54 68.60 2.03 45.73 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H 0.09 2.23 5.80 -2.39 -0.01 2.22 16 23 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.08 2.00 5.95 -2.39 -0.01 1.99 16 25 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 26 H 0.20 3.00 8.06 -2.92 -0.02 2.98 16 27 H 0.08 3.20 5.83 -2.39 -0.01 3.18 16 28 H 0.06 2.01 5.92 -2.39 -0.01 1.99 16 29 H 0.06 2.41 6.23 -2.38 -0.01 2.39 16 30 H 0.06 2.18 4.78 -2.39 -0.01 2.17 16 31 H 0.03 0.98 7.56 -2.39 -0.02 0.96 16 32 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 33 H 0.03 1.37 6.20 -2.39 -0.01 1.36 16 34 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -65.48 275.98 1.09 -64.39 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.10 Total: 8.59 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.73 Total: -7.63 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -7.76 Total: -111.09 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.48 1.09 -64.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598671144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.041 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds