Wall clock time and date at job start Sun Mar 29 2020 22:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47162 * 2 1 4 4 H 1.09000 * 109.46516 * 54.73188 * 3 2 1 5 5 C 1.50695 * 109.47234 * 174.73275 * 3 2 1 6 6 H 1.08003 * 120.00077 * 120.00021 * 5 3 2 7 7 C 1.37883 * 120.00316 * 300.00380 * 5 3 2 8 8 N 1.31520 * 119.99488 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00361 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47318 * 59.99694 * 9 7 5 11 11 H 1.48498 * 109.47213 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47099 * 300.00099 * 9 7 5 13 13 N 1.46900 * 109.47219 * 294.73667 * 3 2 1 14 14 C 1.46888 * 110.99991 * 153.79323 * 13 3 2 15 15 C 1.50707 * 109.47225 * 175.30755 * 14 13 3 16 16 N 1.32157 * 119.99822 * 89.99664 * 15 14 13 17 17 C 1.32119 * 119.99863 * 179.97438 * 16 15 14 18 18 C 1.38397 * 119.99773 * 0.02562 * 17 16 15 19 19 N 1.32125 * 119.99749 * 0.02562 * 18 17 16 20 20 C 1.32154 * 119.99720 * 359.72744 * 19 18 17 21 21 C 1.50706 * 119.99725 * 180.27884 * 20 19 18 22 22 H 1.09003 * 109.47494 * 66.29661 * 1 2 3 23 23 H 1.09003 * 109.47198 * 186.29126 * 1 2 3 24 24 H 1.08996 * 109.47679 * 306.29185 * 1 2 3 25 25 H 1.09003 * 109.47042 * 240.00255 * 2 1 3 26 26 H 1.09001 * 109.47769 * 120.00201 * 2 1 3 27 27 H 0.97000 * 119.99740 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99815 * 29.83604 * 13 3 2 29 29 H 1.09006 * 109.47267 * 295.30726 * 14 13 3 30 30 H 1.09000 * 109.47469 * 55.30633 * 14 13 3 31 31 H 1.07996 * 120.00494 * 180.02562 * 17 16 15 32 32 H 1.08001 * 119.99876 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47101 * 270.24934 * 21 20 19 34 34 H 1.08997 * 109.47014 * 30.24612 * 21 20 19 35 35 H 1.09000 * 109.46795 * 150.24623 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6016 1.9828 0.8391 5 6 3.5413 1.4446 0.1304 6 1 4.1500 1.8880 -0.6437 7 6 4.1379 0.8803 1.2381 8 7 3.3966 0.3408 2.1810 9 14 5.9987 0.8835 1.4001 10 1 6.4933 2.2837 1.4005 11 1 6.3860 0.2219 2.6719 12 1 6.5964 0.1479 0.2569 13 7 1.6568 2.0974 -1.2579 14 6 1.5494 3.5519 -1.0827 15 6 1.2690 4.1989 -2.4146 16 7 0.0215 4.3772 -2.8130 17 6 -0.2243 4.9449 -3.9804 18 6 0.8245 5.3524 -4.7862 19 7 2.0715 5.1732 -4.3883 20 6 2.3173 4.6098 -3.2184 21 6 3.7396 4.4111 -2.7617 22 1 -0.3634 0.4131 -0.9410 23 1 -0.3634 -1.0215 0.1126 24 1 -0.3634 0.6082 0.8282 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.8162 -0.0558 2.9604 28 1 0.7969 1.7121 -1.6188 29 1 0.7366 3.7756 -0.3918 30 1 2.4853 3.9395 -0.6804 31 1 -1.2437 5.0910 -4.3059 32 1 0.6235 5.8161 -5.7407 33 1 4.0989 3.4405 -3.1038 34 1 4.3682 5.1984 -3.1778 35 1 3.7806 4.4507 -1.6732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598674819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:39 Heat of formation + Delta-G solvation = 38.614859 kcal Electronic energy + Delta-G solvation = -16574.114792 eV Core-core repulsion = 13992.909619 eV Total energy + Delta-G solvation = -2581.205173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.93223 -36.51138 -34.31327 -33.65969 -31.94786 -30.60858 -27.95677 -26.94464 -25.34292 -22.95778 -22.59382 -21.62480 -19.59466 -17.60612 -16.29317 -16.25811 -15.41231 -15.16979 -14.64474 -14.22277 -13.79235 -13.20397 -12.73893 -12.62924 -12.48503 -12.33899 -12.17321 -11.69702 -11.39018 -11.20526 -10.97810 -10.83878 -10.73602 -10.64111 -9.96916 -9.81151 -9.65511 -9.16504 -8.82528 -8.78185 -8.35911 -7.30551 -5.98410 -4.03115 0.98358 1.34013 3.32860 3.37869 3.40474 3.85440 4.23447 4.38600 4.43474 4.69639 4.95344 5.29363 5.31900 5.41689 5.50145 5.62526 5.92933 5.96618 6.15949 6.17651 6.22951 6.30632 6.34354 6.43255 6.73564 6.85137 7.06094 7.14582 7.44235 7.50099 7.75480 7.88551 8.02051 8.22015 8.35721 8.68712 9.03897 9.61901 11.06983 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.007303 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.846436 B = 3833.369835 C = 4688.162588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.496 4.496 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.114 3.886 15 C 0.098 3.902 16 N -0.437 5.437 17 C 0.034 3.966 18 C 0.039 3.961 19 N -0.447 5.447 20 C 0.102 3.898 21 C -0.101 4.101 22 H 0.035 0.965 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.260 0.740 28 H 0.321 0.679 29 H 0.037 0.963 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 7.193 -8.840 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.534 4.534 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.310 5.310 14 C -0.016 4.016 15 C -0.043 4.043 16 N -0.153 5.153 17 C -0.125 4.125 18 C -0.121 4.121 19 N -0.162 5.162 20 C -0.038 4.038 21 C -0.158 4.158 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.119 0.881 27 H 0.070 0.930 28 H 0.139 0.861 29 H 0.055 0.945 30 H 0.116 0.884 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.990 7.118 -8.877 12.058 hybrid contribution -0.085 0.031 0.462 0.471 sum -4.074 7.149 -8.415 11.769 Atomic orbital electron populations 1.21884 0.99546 0.99752 0.99634 1.21770 0.91271 1.00194 1.03123 1.19194 0.95557 0.89998 0.83962 0.97758 1.21164 0.91038 1.36816 1.04432 0.91890 1.24959 0.98076 0.95583 0.95830 1.69864 1.34844 1.39198 1.09596 0.86619 0.85758 0.78181 0.77176 1.20351 1.21502 1.20301 1.60729 1.36734 1.00179 1.33331 1.20779 1.01481 0.90850 0.88534 1.22377 0.88448 0.95104 0.98390 1.68294 1.22377 1.10024 1.14558 1.23641 1.00970 0.96551 0.91361 1.23631 0.89036 0.98636 1.00817 1.68288 1.22421 1.11198 1.14309 1.22165 0.98420 0.93289 0.89974 1.20782 0.89066 1.03267 1.02706 0.94616 0.94374 0.93814 0.94044 0.88128 0.92984 0.86132 0.94486 0.88383 0.81981 0.81976 0.89121 0.91206 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.63 37.15 0.36 -2.58 16 2 C -0.13 -2.90 5.35 -26.73 -0.14 -3.04 16 3 C 0.22 5.29 2.03 -68.86 -0.14 5.15 16 4 H 0.00 0.13 7.84 -51.93 -0.41 -0.28 16 5 C -0.50 -13.01 8.60 -34.44 -0.30 -13.31 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.84 11.29 55.43 0.63 -24.21 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -14.13 6.26 -109.22 -0.68 -14.81 16 14 C 0.11 2.15 5.35 -4.98 -0.03 2.12 16 15 C 0.10 1.70 6.34 -82.41 -0.52 1.18 16 16 N -0.44 -7.18 10.42 -9.29 -0.10 -7.27 16 17 C 0.03 0.44 11.23 -17.37 -0.19 0.25 16 18 C 0.04 0.49 11.23 -17.37 -0.19 0.29 16 19 N -0.45 -6.92 10.42 -9.28 -0.10 -7.01 16 20 C 0.10 1.68 6.78 -82.41 -0.56 1.12 16 21 C -0.10 -1.52 9.79 36.01 0.35 -1.17 16 22 H 0.03 0.64 6.66 -51.93 -0.35 0.29 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.32 6.50 6.62 -39.29 -0.26 6.24 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.87 5.77 -51.93 -0.30 1.57 16 31 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.38 5.95 -51.93 -0.31 1.07 16 LS Contribution 290.74 15.07 4.38 4.38 Total: -1.00 -28.75 290.74 -7.21 -35.96 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.86 Total: 5.75 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.46 Total: -8.58 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.25 Total: -53.31 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.75 -7.21 -35.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598674819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.577 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds