Wall clock time and date at job start Sun Mar 29 2020 22:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47162 * 2 1 4 4 H 1.09000 * 109.46516 * 54.73188 * 3 2 1 5 5 C 1.50695 * 109.47234 * 174.73275 * 3 2 1 6 6 H 1.08003 * 120.00077 * 120.00021 * 5 3 2 7 7 C 1.37883 * 120.00316 * 300.00380 * 5 3 2 8 8 N 1.31520 * 119.99488 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00361 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47318 * 59.99694 * 9 7 5 11 11 H 1.48498 * 109.47213 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47099 * 300.00099 * 9 7 5 13 13 N 1.46900 * 109.47219 * 294.73667 * 3 2 1 14 14 C 1.46888 * 110.99991 * 153.79323 * 13 3 2 15 15 C 1.50707 * 109.47225 * 175.30755 * 14 13 3 16 16 N 1.32157 * 119.99822 * 89.99664 * 15 14 13 17 17 C 1.32119 * 119.99863 * 179.97438 * 16 15 14 18 18 C 1.38397 * 119.99773 * 0.02562 * 17 16 15 19 19 N 1.32125 * 119.99749 * 0.02562 * 18 17 16 20 20 C 1.32154 * 119.99720 * 359.72744 * 19 18 17 21 21 C 1.50706 * 119.99725 * 180.27884 * 20 19 18 22 22 H 1.09003 * 109.47494 * 66.29661 * 1 2 3 23 23 H 1.09003 * 109.47198 * 186.29126 * 1 2 3 24 24 H 1.08996 * 109.47679 * 306.29185 * 1 2 3 25 25 H 1.09003 * 109.47042 * 240.00255 * 2 1 3 26 26 H 1.09001 * 109.47769 * 120.00201 * 2 1 3 27 27 H 0.97000 * 119.99740 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99815 * 29.83604 * 13 3 2 29 29 H 1.09006 * 109.47267 * 295.30726 * 14 13 3 30 30 H 1.09000 * 109.47469 * 55.30633 * 14 13 3 31 31 H 1.07996 * 120.00494 * 180.02562 * 17 16 15 32 32 H 1.08001 * 119.99876 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47101 * 270.24934 * 21 20 19 34 34 H 1.08997 * 109.47014 * 30.24612 * 21 20 19 35 35 H 1.09000 * 109.46795 * 150.24623 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6016 1.9828 0.8391 5 6 3.5413 1.4446 0.1304 6 1 4.1500 1.8880 -0.6437 7 6 4.1379 0.8803 1.2381 8 7 3.3966 0.3408 2.1810 9 14 5.9987 0.8835 1.4001 10 1 6.4933 2.2837 1.4005 11 1 6.3860 0.2219 2.6719 12 1 6.5964 0.1479 0.2569 13 7 1.6568 2.0974 -1.2579 14 6 1.5494 3.5519 -1.0827 15 6 1.2690 4.1989 -2.4146 16 7 0.0215 4.3772 -2.8130 17 6 -0.2243 4.9449 -3.9804 18 6 0.8245 5.3524 -4.7862 19 7 2.0715 5.1732 -4.3883 20 6 2.3173 4.6098 -3.2184 21 6 3.7396 4.4111 -2.7617 22 1 -0.3634 0.4131 -0.9410 23 1 -0.3634 -1.0215 0.1126 24 1 -0.3634 0.6082 0.8282 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.8162 -0.0558 2.9604 28 1 0.7969 1.7121 -1.6188 29 1 0.7366 3.7756 -0.3918 30 1 2.4853 3.9395 -0.6804 31 1 -1.2437 5.0910 -4.3059 32 1 0.6235 5.8161 -5.7407 33 1 4.0989 3.4405 -3.1038 34 1 4.3682 5.1984 -3.1778 35 1 3.7806 4.4507 -1.6732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598674819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:38 Heat of formation + Delta-G solvation = 18.865266 kcal Electronic energy + Delta-G solvation = -16574.971199 eV Core-core repulsion = 13992.909619 eV Total energy + Delta-G solvation = -2582.061580 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.08799 -38.24770 -35.54027 -35.11577 -33.79339 -32.16338 -29.29469 -28.54137 -26.92851 -24.63491 -23.86465 -22.98459 -21.47103 -18.81972 -18.28570 -17.40458 -16.83880 -16.64248 -16.18968 -15.72921 -15.45541 -14.76087 -14.27486 -14.04332 -13.93639 -13.69345 -13.50392 -13.28328 -13.03621 -12.73511 -12.61229 -12.52323 -12.33335 -11.97164 -11.91881 -11.60073 -11.48705 -11.04578 -10.39568 -10.00032 -9.96374 -9.06702 -8.02877 -6.14365 -0.14246 0.19040 1.46678 1.47738 1.54920 2.47414 2.70934 3.11605 3.23058 3.27000 3.58651 3.76303 3.92059 4.16910 4.39874 4.48391 4.51208 4.55630 4.63625 4.64823 4.71635 4.88040 4.94700 5.10127 5.17896 5.22268 5.35021 5.54535 5.59385 5.77665 5.88785 6.34242 6.38013 6.44923 6.86269 6.90612 6.98281 7.54235 9.00790 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.007303 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.846436 B = 3833.369835 C = 4688.162588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.226 3.774 4 H -0.027 1.027 5 C -0.508 4.508 6 H 0.060 0.940 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.673 5.673 14 C 0.122 3.878 15 C 0.075 3.925 16 N -0.460 5.460 17 C 0.041 3.959 18 C 0.053 3.947 19 N -0.462 5.462 20 C 0.088 3.912 21 C -0.096 4.096 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.259 0.741 28 H 0.326 0.674 29 H 0.028 0.972 30 H 0.088 0.912 31 H 0.206 0.794 32 H 0.210 0.790 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 8.109 -10.874 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.118 3.882 4 H -0.010 1.010 5 C -0.547 4.547 6 H 0.078 0.922 7 C -0.188 4.188 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.305 5.305 14 C -0.008 4.008 15 C -0.064 4.064 16 N -0.175 5.175 17 C -0.120 4.120 18 C -0.109 4.109 19 N -0.178 5.178 20 C -0.051 4.051 21 C -0.153 4.153 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.223 0.777 32 H 0.226 0.774 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.589 8.031 -10.898 14.294 hybrid contribution -0.010 -0.165 0.965 0.979 sum -4.599 7.866 -9.934 13.480 Atomic orbital electron populations 1.21746 0.96584 1.01078 1.00270 1.21606 0.93946 0.99061 1.01330 1.18974 0.94497 0.90473 0.84211 1.00977 1.21448 0.92319 1.36553 1.04399 0.92221 1.25670 1.02121 0.95366 0.95610 1.70001 1.36341 1.39878 1.09952 0.85676 0.80916 0.78411 0.77010 1.19554 1.21413 1.19931 1.60617 1.37015 1.01468 1.31422 1.20603 1.00652 0.89545 0.90027 1.21956 0.89437 0.97052 0.97975 1.68238 1.21882 1.10967 1.16417 1.24393 1.03207 0.94564 0.89825 1.24443 0.87823 0.96590 1.01995 1.68349 1.24165 1.11517 1.13743 1.22157 0.98351 0.94059 0.90572 1.20703 0.89328 1.03235 1.02063 0.92938 0.92392 0.94435 0.94522 0.91063 0.93152 0.85667 0.95433 0.89357 0.77727 0.77369 0.90245 0.89520 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 9.63 71.98 0.69 -4.66 16 2 C -0.12 -5.70 5.35 30.59 0.16 -5.54 16 3 C 0.23 11.21 2.03 44.17 0.09 11.30 16 4 H -0.03 -1.51 7.84 -2.39 -0.02 -1.53 16 5 C -0.51 -27.33 8.60 25.60 0.22 -27.11 16 6 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.57 5.29 84.66 0.45 1.01 16 8 N -0.92 -52.35 11.29 21.45 0.24 -52.11 16 9 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 N -0.67 -28.59 6.26 -499.47 -3.13 -31.72 16 14 C 0.12 4.72 5.35 85.56 0.46 5.18 16 15 C 0.08 2.57 6.34 42.54 0.27 2.84 16 16 N -0.46 -14.30 10.42 -183.29 -1.91 -16.21 16 17 C 0.04 0.91 11.23 84.69 0.95 1.86 16 18 C 0.05 1.12 11.23 84.69 0.95 2.07 16 19 N -0.46 -13.23 10.42 -183.29 -1.91 -15.14 16 20 C 0.09 2.81 6.78 42.54 0.29 3.10 16 21 C -0.10 -2.91 9.79 71.24 0.70 -2.22 16 22 H 0.05 1.82 6.66 -2.39 -0.02 1.81 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 3.81 5.95 -2.39 -0.01 3.79 16 27 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.33 13.17 6.62 -89.69 -0.59 12.57 16 29 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.09 3.53 5.77 -2.39 -0.01 3.52 16 31 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 32 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.53 5.95 -2.39 -0.01 2.51 16 Total: -1.00 -62.84 290.74 1.04 -61.80 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.49 Total: 20.35 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 5.23 Total: -12.17 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -6.71 Total: -115.18 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -62.84 1.04 -61.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598674819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.665 kcal (2) G-P(sol) polarization free energy of solvation -62.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds