Wall clock time and date at job start Sun Mar 29 2020 22:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46954 * 2 1 4 4 C 1.46901 * 111.00235 * 72.00381 * 3 2 1 5 5 C 1.50700 * 109.46802 * 285.43533 * 4 3 2 6 6 H 1.07991 * 120.00504 * 354.43482 * 5 4 3 7 7 C 1.37879 * 119.99281 * 174.43834 * 5 4 3 8 8 N 1.31519 * 119.99373 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00444 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47457 * 90.00167 * 9 7 5 11 11 H 1.48507 * 109.47028 * 210.00283 * 9 7 5 12 12 H 1.48503 * 109.47142 * 330.00156 * 9 7 5 13 13 C 1.46901 * 110.99616 * 195.95837 * 3 2 1 14 14 C 1.50700 * 109.47147 * 71.78095 * 13 3 2 15 15 N 1.32149 * 119.99985 * 82.91565 * 14 13 3 16 16 C 1.32124 * 120.00089 * 179.97438 * 15 14 13 17 17 C 1.38392 * 119.99704 * 0.02562 * 16 15 14 18 18 N 1.32120 * 119.99741 * 359.97438 * 17 16 15 19 19 C 1.32156 * 119.99876 * 359.73779 * 18 17 16 20 20 C 1.50700 * 119.99920 * 180.27301 * 19 18 17 21 21 H 1.08999 * 109.47649 * 288.08672 * 1 2 3 22 22 H 1.09009 * 109.46773 * 48.08565 * 1 2 3 23 23 H 1.09003 * 109.46920 * 168.08174 * 1 2 3 24 24 H 1.08997 * 109.47347 * 239.99781 * 2 1 3 25 25 H 1.09000 * 109.46871 * 119.99477 * 2 1 3 26 26 H 1.08998 * 109.47027 * 45.43822 * 4 3 2 27 27 H 1.08995 * 109.46745 * 165.43380 * 4 3 2 28 28 H 0.97008 * 119.99672 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46886 * 191.78083 * 13 3 2 30 30 H 1.08995 * 109.47317 * 311.77820 * 13 3 2 31 31 H 1.08003 * 120.00038 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.00088 * 180.02562 * 17 16 15 33 33 H 1.09004 * 109.47355 * 270.63099 * 20 19 18 34 34 H 1.09002 * 109.47447 * 30.62946 * 20 19 18 35 35 H 1.09002 * 109.47509 * 150.63073 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7956 2.0226 1.3043 5 6 0.3338 2.3559 1.4560 6 1 -0.3440 2.2010 0.6297 7 6 -0.1382 2.8587 2.6499 8 7 -1.4141 3.1491 2.7825 9 14 1.0340 3.1262 4.0795 10 1 1.5955 4.4991 4.0092 11 1 0.3006 2.9563 5.3596 12 1 2.1380 2.1356 4.0063 13 6 3.4383 1.4418 -0.3771 14 6 3.5796 1.1428 -1.8473 15 7 3.3950 2.1020 -2.7374 16 6 3.5194 1.8401 -4.0264 17 6 3.8425 0.5610 -4.4445 18 7 4.0272 -0.3979 -3.5546 19 6 3.9083 -0.1344 -2.2650 20 6 4.1249 -1.2268 -1.2497 21 1 -0.3634 0.3190 0.9768 22 1 -0.3633 0.6866 -0.7648 23 1 -0.3633 -1.0055 -0.2122 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.0971 1.3401 2.0989 27 1 2.3853 2.9371 1.3677 28 1 -1.7463 3.5025 3.6226 29 1 3.8298 2.4376 -0.1695 30 1 3.9972 0.7043 0.1990 31 1 3.3688 2.6241 -4.7538 32 1 3.9447 0.3469 -5.4981 33 1 3.1806 -1.7359 -1.0566 34 1 4.8512 -1.9424 -1.6351 35 1 4.4996 -0.7924 -0.3228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598678291.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:55 Heat of formation + Delta-G solvation = 59.528324 kcal Electronic energy + Delta-G solvation = -16783.458970 eV Core-core repulsion = 14203.160673 eV Total energy + Delta-G solvation = -2580.298297 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10096 -37.30059 -34.41281 -33.40455 -32.17841 -30.19324 -28.38895 -27.88623 -25.51161 -22.96589 -22.40605 -21.92658 -19.93718 -17.66062 -16.93074 -16.27824 -15.71082 -15.37306 -14.53601 -14.34616 -13.84417 -13.61612 -13.29772 -12.90868 -12.75885 -12.46145 -12.16971 -11.74901 -11.48615 -11.35487 -11.19029 -10.91583 -10.81138 -10.63159 -10.34631 -10.10576 -9.80651 -9.08595 -8.95205 -8.86655 -8.50840 -7.42837 -6.02505 -3.97643 0.86930 1.27883 3.28653 3.35971 3.36862 3.74910 4.10526 4.28398 4.42873 4.54767 4.74294 4.90497 5.16362 5.27298 5.28640 5.42742 5.46841 5.56930 5.76788 5.83037 5.89847 6.04625 6.09255 6.32498 6.49461 6.53554 6.74044 6.85519 7.01038 7.40479 7.44174 7.62455 7.85379 7.94047 8.02981 8.67398 9.08956 9.58358 11.09728 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036768 B = 0.006502 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.354827 B = 4305.076771 C = 4345.077777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.060 3.940 3 N -0.517 5.517 4 C 0.161 3.839 5 C -0.504 4.504 6 H 0.092 0.908 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.870 3.130 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.096 3.904 14 C 0.108 3.892 15 N -0.415 5.415 16 C 0.043 3.957 17 C 0.038 3.962 18 N -0.443 5.443 19 C 0.078 3.922 20 C -0.109 4.109 21 H 0.093 0.907 22 H 0.055 0.945 23 H 0.030 0.970 24 H 0.052 0.948 25 H 0.026 0.974 26 H -0.005 1.005 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.542 -6.872 -9.474 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 N -0.242 5.242 4 C 0.035 3.965 5 C -0.542 4.542 6 H 0.110 0.890 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.697 3.303 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.034 4.034 14 C -0.033 4.033 15 N -0.130 5.130 16 C -0.117 4.117 17 C -0.122 4.122 18 N -0.158 5.158 19 C -0.063 4.063 20 C -0.166 4.166 21 H 0.111 0.889 22 H 0.074 0.926 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.012 0.988 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.130 -6.528 -9.671 16.125 hybrid contribution 0.928 -0.099 1.184 1.508 sum 12.058 -6.627 -8.487 16.166 Atomic orbital electron populations 1.22026 0.94230 0.98609 1.05411 1.22138 0.97541 0.88831 0.98321 1.61983 1.12156 1.16612 1.33410 1.20316 0.98915 0.93405 0.83889 1.21206 0.91805 1.41354 0.99852 0.89038 1.24899 0.94884 0.95401 0.98251 1.69890 1.13150 1.44913 1.25999 0.86949 0.81611 0.79046 0.82658 1.20239 1.21295 1.19299 1.21029 0.92469 1.02299 0.87564 1.22123 0.94012 0.89623 0.97579 1.68328 1.08266 1.34665 1.01721 1.23777 0.96914 0.97357 0.93618 1.23656 0.97684 0.90512 1.00321 1.68228 1.11267 1.34622 1.01704 1.22066 0.96738 0.95112 0.92345 1.20938 1.03480 0.95986 0.96210 0.88872 0.92613 0.95145 0.92960 0.95625 0.98754 0.95850 0.92730 0.89215 0.93181 0.81669 0.81774 0.89461 0.90471 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.49 37.16 0.32 -2.65 16 2 C 0.06 1.12 4.99 -3.82 -0.02 1.10 16 3 N -0.52 -10.72 4.43 -237.52 -1.05 -11.78 16 4 C 0.16 3.79 3.85 -4.98 -0.02 3.77 16 5 C -0.50 -13.88 7.42 -34.44 -0.26 -14.14 16 6 H 0.09 2.74 6.07 -52.49 -0.32 2.42 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 9 Si 0.87 21.08 27.58 -169.99 -4.69 16.39 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.21 6.38 56.52 0.36 -5.85 16 13 C 0.10 1.65 5.10 -4.98 -0.03 1.62 16 14 C 0.11 1.78 5.81 -82.42 -0.48 1.30 16 15 N -0.42 -6.97 10.42 -9.29 -0.10 -7.07 16 16 C 0.04 0.56 11.23 -17.37 -0.19 0.37 16 17 C 0.04 0.46 11.23 -17.37 -0.20 0.27 16 18 N -0.44 -6.32 10.42 -9.29 -0.10 -6.41 16 19 C 0.08 1.15 6.02 -82.42 -0.50 0.65 16 20 C -0.11 -1.29 8.80 36.01 0.32 -0.97 16 21 H 0.09 2.19 5.88 -51.93 -0.31 1.89 16 22 H 0.05 1.22 7.68 -51.92 -0.40 0.82 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.88 4.16 -51.93 -0.22 0.67 16 25 H 0.03 0.46 7.83 -51.93 -0.41 0.06 16 26 H -0.01 -0.12 6.47 -51.93 -0.34 -0.46 16 27 H 0.02 0.56 7.38 -51.93 -0.38 0.17 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.09 1.56 7.70 -51.93 -0.40 1.16 16 30 H 0.05 0.75 5.60 -51.93 -0.29 0.46 16 31 H 0.17 1.56 8.06 -52.48 -0.42 1.13 16 32 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.09 1.03 6.47 -51.93 -0.34 0.69 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.91 5.87 -51.93 -0.30 0.60 16 LS Contribution 277.63 15.07 4.18 4.18 Total: -1.00 -31.76 277.63 -6.69 -38.45 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.56 Total: -0.52 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.15 Total: -6.88 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.47 Total: -51.63 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.69 Total: 16.39 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.76 -6.69 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598678291.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.980 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds