Wall clock time and date at job start Sun Mar 29 2020 22:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46954 * 2 1 4 4 C 1.46901 * 111.00235 * 72.00381 * 3 2 1 5 5 C 1.50700 * 109.46802 * 285.43533 * 4 3 2 6 6 H 1.07991 * 120.00504 * 354.43482 * 5 4 3 7 7 C 1.37879 * 119.99281 * 174.43834 * 5 4 3 8 8 N 1.31519 * 119.99373 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00444 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47457 * 90.00167 * 9 7 5 11 11 H 1.48507 * 109.47028 * 210.00283 * 9 7 5 12 12 H 1.48503 * 109.47142 * 330.00156 * 9 7 5 13 13 C 1.46901 * 110.99616 * 195.95837 * 3 2 1 14 14 C 1.50700 * 109.47147 * 71.78095 * 13 3 2 15 15 N 1.32149 * 119.99985 * 82.91565 * 14 13 3 16 16 C 1.32124 * 120.00089 * 179.97438 * 15 14 13 17 17 C 1.38392 * 119.99704 * 0.02562 * 16 15 14 18 18 N 1.32120 * 119.99741 * 359.97438 * 17 16 15 19 19 C 1.32156 * 119.99876 * 359.73779 * 18 17 16 20 20 C 1.50700 * 119.99920 * 180.27301 * 19 18 17 21 21 H 1.08999 * 109.47649 * 288.08672 * 1 2 3 22 22 H 1.09009 * 109.46773 * 48.08565 * 1 2 3 23 23 H 1.09003 * 109.46920 * 168.08174 * 1 2 3 24 24 H 1.08997 * 109.47347 * 239.99781 * 2 1 3 25 25 H 1.09000 * 109.46871 * 119.99477 * 2 1 3 26 26 H 1.08998 * 109.47027 * 45.43822 * 4 3 2 27 27 H 1.08995 * 109.46745 * 165.43380 * 4 3 2 28 28 H 0.97008 * 119.99672 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46886 * 191.78083 * 13 3 2 30 30 H 1.08995 * 109.47317 * 311.77820 * 13 3 2 31 31 H 1.08003 * 120.00038 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.00088 * 180.02562 * 17 16 15 33 33 H 1.09004 * 109.47355 * 270.63099 * 20 19 18 34 34 H 1.09002 * 109.47447 * 30.62946 * 20 19 18 35 35 H 1.09002 * 109.47509 * 150.63073 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7956 2.0226 1.3043 5 6 0.3338 2.3559 1.4560 6 1 -0.3440 2.2010 0.6297 7 6 -0.1382 2.8587 2.6499 8 7 -1.4141 3.1491 2.7825 9 14 1.0340 3.1262 4.0795 10 1 1.5955 4.4991 4.0092 11 1 0.3006 2.9563 5.3596 12 1 2.1380 2.1356 4.0063 13 6 3.4383 1.4418 -0.3771 14 6 3.5796 1.1428 -1.8473 15 7 3.3950 2.1020 -2.7374 16 6 3.5194 1.8401 -4.0264 17 6 3.8425 0.5610 -4.4445 18 7 4.0272 -0.3979 -3.5546 19 6 3.9083 -0.1344 -2.2650 20 6 4.1249 -1.2268 -1.2497 21 1 -0.3634 0.3190 0.9768 22 1 -0.3633 0.6866 -0.7648 23 1 -0.3633 -1.0055 -0.2122 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.0971 1.3401 2.0989 27 1 2.3853 2.9371 1.3677 28 1 -1.7463 3.5025 3.6226 29 1 3.8298 2.4376 -0.1695 30 1 3.9972 0.7043 0.1990 31 1 3.3688 2.6241 -4.7538 32 1 3.9447 0.3469 -5.4981 33 1 3.1806 -1.7359 -1.0566 34 1 4.8512 -1.9424 -1.6351 35 1 4.4996 -0.7924 -0.3228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598678291.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:54 Heat of formation + Delta-G solvation = 35.833093 kcal Electronic energy + Delta-G solvation = -16784.486472 eV Core-core repulsion = 14203.160673 eV Total energy + Delta-G solvation = -2581.325799 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.16893 -38.83818 -35.48240 -34.95841 -33.90894 -31.72745 -30.09008 -28.98848 -26.96692 -24.14236 -23.93040 -23.37811 -21.55806 -18.95269 -18.72042 -17.37850 -17.07109 -16.63696 -16.16326 -15.73729 -15.42459 -15.13516 -14.56806 -14.45358 -13.93115 -13.77697 -13.47393 -13.26275 -13.01578 -12.94296 -12.52893 -12.41817 -12.24717 -12.22694 -11.93536 -11.88305 -11.54647 -11.14638 -10.64840 -9.99885 -9.95168 -9.00110 -8.19618 -6.19318 -0.16548 0.21071 1.38323 1.38473 1.48189 2.39303 2.66422 3.11976 3.14192 3.24782 3.31131 3.57650 3.81174 4.13284 4.20778 4.33232 4.41848 4.45962 4.54538 4.59423 4.68708 4.76475 4.81385 4.89301 4.96015 5.07289 5.13486 5.27255 5.50876 5.60051 5.68324 6.02925 6.37839 6.42017 6.67553 6.86418 6.91495 7.40467 8.95963 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036768 B = 0.006502 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.354827 B = 4305.076771 C = 4345.077777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 N -0.539 5.539 4 C 0.170 3.830 5 C -0.502 4.502 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.246 1.246 13 C 0.099 3.901 14 C 0.081 3.919 15 N -0.455 5.455 16 C 0.038 3.962 17 C 0.051 3.949 18 N -0.458 5.458 19 C 0.074 3.926 20 C -0.108 4.108 21 H 0.055 0.945 22 H 0.028 0.972 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.001 0.999 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.197 0.803 32 H 0.207 0.793 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.899 -8.112 -10.204 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 N -0.264 5.264 4 C 0.043 3.957 5 C -0.540 4.540 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.763 3.237 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.170 1.170 13 C -0.030 4.030 14 C -0.059 4.059 15 N -0.170 5.170 16 C -0.123 4.123 17 C -0.109 4.109 18 N -0.174 5.174 19 C -0.065 4.065 20 C -0.165 4.165 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.019 0.981 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.214 0.786 32 H 0.224 0.776 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.513 -7.792 -10.401 18.748 hybrid contribution 0.159 0.277 1.182 1.225 sum 13.673 -7.514 -9.219 18.122 Atomic orbital electron populations 1.21869 0.95943 0.99450 1.02175 1.22136 0.95935 0.88280 0.99967 1.61796 1.15195 1.17722 1.31659 1.20069 0.95946 0.93851 0.85828 1.21414 0.93554 1.40407 0.98665 0.92996 1.25771 0.96506 0.95341 1.01440 1.70054 1.15475 1.46750 1.26919 0.85843 0.79724 0.79561 0.78575 1.19667 1.21216 1.16953 1.21014 0.90278 1.02702 0.88980 1.21984 0.96351 0.90613 0.96957 1.68240 1.09365 1.35854 1.03495 1.24357 0.96137 0.98915 0.92853 1.24356 0.95009 0.89633 1.01929 1.68344 1.11932 1.35324 1.01772 1.22342 0.96092 0.94940 0.93156 1.21002 1.04009 0.95577 0.95944 0.92644 0.95244 0.92147 0.90644 0.94330 0.98096 0.95777 0.92759 0.90164 0.90570 0.78575 0.77609 0.89295 0.88883 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.49 71.98 0.61 -5.04 16 2 C 0.06 2.34 4.99 86.30 0.43 2.77 16 3 N -0.54 -22.08 4.43 -905.38 -4.01 -26.10 16 4 C 0.17 7.95 3.85 85.56 0.33 8.28 16 5 C -0.50 -28.42 7.42 25.60 0.19 -28.23 16 6 H 0.05 3.28 6.07 -2.92 -0.02 3.27 16 7 C 0.01 0.34 5.47 84.65 0.46 0.80 16 8 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 9 Si 0.94 43.53 27.58 68.60 1.89 45.42 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.25 -10.43 6.38 99.48 0.64 -9.79 16 13 C 0.10 3.27 5.10 85.56 0.44 3.71 16 14 C 0.08 2.56 5.81 42.54 0.25 2.81 16 15 N -0.45 -14.76 10.42 -183.30 -1.91 -16.67 16 16 C 0.04 0.89 11.23 84.69 0.95 1.84 16 17 C 0.05 1.07 11.23 84.69 0.95 2.02 16 18 N -0.46 -11.76 10.42 -183.30 -1.91 -13.67 16 19 C 0.07 2.01 6.02 42.53 0.26 2.27 16 20 C -0.11 -2.25 8.80 71.24 0.63 -1.62 16 21 H 0.05 2.70 5.88 -2.39 -0.01 2.68 16 22 H 0.03 1.32 7.68 -2.38 -0.02 1.30 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.08 2.41 4.16 -2.39 -0.01 2.40 16 25 H 0.04 1.31 7.83 -2.39 -0.02 1.29 16 26 H 0.00 0.06 6.47 -2.39 -0.02 0.05 16 27 H 0.02 1.13 7.38 -2.39 -0.02 1.11 16 28 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 29 H 0.08 2.75 7.70 -2.39 -0.02 2.73 16 30 H 0.08 2.08 5.60 -2.39 -0.01 2.07 16 31 H 0.20 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.09 1.83 6.47 -2.39 -0.02 1.81 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.70 5.87 -2.39 -0.01 1.69 16 Total: -1.00 -70.91 277.63 0.87 -70.04 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.02 Total: 10.37 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 5.49 Total: -10.39 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -7.54 Total: -115.43 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.89 Total: 45.42 kcal Total: -70.91 0.87 -70.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598678291.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.872 kcal (2) G-P(sol) polarization free energy of solvation -70.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds