Wall clock time and date at job start Sun Mar 29 2020 21:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34127 * 125.99083 * 2 1 4 4 C 1.30500 * 109.25764 * 179.97438 * 3 2 1 5 5 C 1.50692 * 125.65118 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47368 * 274.97613 * 5 4 3 7 7 C 1.36944 * 119.99841 * 90.00120 * 6 5 4 8 8 H 1.08003 * 119.99532 * 217.83447 * 7 6 5 9 9 C 1.38812 * 119.99843 * 37.83569 * 7 6 5 10 10 N 1.31612 * 120.00245 * 20.67975 * 9 7 6 11 11 Si 1.86803 * 119.99624 * 200.68263 * 9 7 6 12 12 H 1.48501 * 109.46947 * 90.00211 * 11 9 7 13 13 H 1.48491 * 109.47208 * 209.99707 * 11 9 7 14 14 H 1.48491 * 109.47306 * 330.00013 * 11 9 7 15 15 C 1.46497 * 120.00280 * 269.99936 * 6 5 4 16 16 C 1.53005 * 117.50147 * 194.24246 * 15 6 5 17 17 C 1.52997 * 117.49803 * 125.58189 * 15 6 5 18 18 N 1.35050 * 108.69683 * 0.02562 * 4 3 2 19 19 H 0.96991 * 126.39355 * 180.02562 * 18 4 3 20 20 C 1.34666 * 125.98845 * 179.97438 * 2 1 3 21 21 C 1.50707 * 126.59001 * 0.05477 * 20 2 1 22 22 H 1.09002 * 109.47396 * 90.01760 * 1 2 3 23 23 H 1.08996 * 109.47432 * 210.02394 * 1 2 3 24 24 H 1.09000 * 109.47082 * 330.02222 * 1 2 3 25 25 H 1.09004 * 109.47254 * 34.97804 * 5 4 3 26 26 H 1.09001 * 109.47185 * 154.97681 * 5 4 3 27 27 H 0.97007 * 120.00035 * 174.95035 * 10 9 7 28 28 H 1.09003 * 115.54691 * 339.91411 * 15 6 5 29 29 H 1.09001 * 117.49405 * 0.02562 * 16 15 6 30 30 H 1.09001 * 117.49725 * 145.02356 * 16 15 6 31 31 H 1.09006 * 117.50192 * 214.98176 * 17 15 6 32 32 H 1.09004 * 117.50243 * 359.97438 * 17 15 6 33 33 H 1.09003 * 109.46619 * 269.99727 * 21 20 2 34 34 H 1.08997 * 109.47067 * 29.99831 * 21 20 2 35 35 H 1.08995 * 109.47135 * 150.00263 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 0.0006 5 6 4.7386 1.6293 0.0013 6 7 5.0530 2.0225 -1.3744 7 6 4.4788 3.1422 -1.9147 8 1 4.1758 3.1469 -2.9514 9 6 4.2862 4.2709 -1.1301 10 7 4.9898 4.4355 -0.0300 11 14 3.0284 5.5562 -1.6355 12 1 1.7107 5.2208 -1.0385 13 1 3.4644 6.8916 -1.1540 14 1 2.9103 5.5780 -3.1155 15 6 5.9817 1.2180 -2.1722 16 6 6.5293 1.8393 -3.4587 17 6 5.4926 0.7154 -3.5320 18 7 3.5912 -0.6402 0.0004 19 1 4.3912 -1.1886 0.0010 20 6 2.2983 -1.0896 0.0005 21 6 1.8471 -2.5276 0.0000 22 1 -0.3634 -0.0003 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 4.5122 2.5180 0.5905 26 1 5.5946 1.1133 0.4363 27 1 4.9087 5.2572 0.4792 28 1 6.6471 0.5673 -1.6047 29 1 6.1988 2.8468 -3.7113 30 1 7.5548 1.5970 -3.7378 31 1 5.8365 -0.2658 -3.8594 32 1 4.4797 0.9829 -3.8329 33 1 1.7376 -2.8743 1.0276 34 1 0.8896 -2.6077 -0.5146 35 1 2.5879 -3.1406 -0.5133 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600115537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:11 Heat of formation + Delta-G solvation = 95.228473 kcal Electronic energy + Delta-G solvation = -16908.482190 eV Core-core repulsion = 14329.731968 eV Total energy + Delta-G solvation = -2578.750223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32020 -37.02163 -33.70697 -32.49603 -32.05459 -30.48319 -28.05015 -26.92821 -24.32444 -22.87384 -21.40428 -20.26586 -19.85343 -18.95116 -16.86897 -16.03034 -15.46182 -14.82036 -14.32527 -13.89462 -13.61279 -13.02545 -12.93495 -12.62306 -12.24795 -12.15485 -12.08636 -11.85902 -11.63113 -11.07230 -10.76473 -10.67950 -10.59615 -10.40784 -9.98730 -9.68552 -9.36620 -9.04990 -9.00100 -8.40942 -7.37638 -6.55507 -5.84103 -3.38743 2.68166 3.44198 3.50933 3.55869 3.78555 3.90392 4.51163 4.91800 5.20069 5.29257 5.35630 5.37352 5.47402 5.67587 5.78596 5.81828 5.94675 5.97544 6.08565 6.10540 6.20079 6.21743 6.37538 6.43958 6.54786 6.71697 6.92522 6.94461 7.15535 7.44857 7.52086 7.85012 8.14458 8.50061 9.04770 9.11807 9.75567 10.28108 11.20341 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.010104 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.558315 B = 2770.465153 C = 3599.742368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.005 4.005 3 N -0.477 5.477 4 C 0.231 3.769 5 C 0.219 3.781 6 N -0.535 5.535 7 C -0.258 4.258 8 H 0.060 0.940 9 C 0.028 3.972 10 N -0.889 5.889 11 Si 0.904 3.096 12 H -0.279 1.279 13 H -0.292 1.292 14 H -0.279 1.279 15 C 0.124 3.876 16 C -0.190 4.190 17 C -0.228 4.228 18 N -0.571 5.571 19 H 0.407 0.593 20 C -0.063 4.063 21 C -0.066 4.066 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.129 0.871 26 H 0.043 0.957 27 H 0.259 0.741 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 -11.411 0.452 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.135 4.135 3 N -0.196 5.196 4 C -0.035 4.035 5 C 0.090 3.910 6 N -0.251 5.251 7 C -0.387 4.387 8 H 0.078 0.922 9 C -0.173 4.173 10 N -0.531 5.531 11 Si 0.734 3.266 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.205 1.205 15 C 0.014 3.986 16 C -0.229 4.229 17 C -0.268 4.268 18 N -0.174 5.174 19 H 0.243 0.757 20 C -0.178 4.178 21 C -0.124 4.124 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.146 0.854 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.560 -10.409 0.645 10.739 hybrid contribution 0.012 -0.533 -0.468 0.709 sum -2.548 -10.942 0.177 11.236 Atomic orbital electron populations 1.19931 0.88914 1.01666 1.01393 1.20512 0.95998 0.88766 1.08225 1.70274 1.00246 1.29172 1.19915 1.25489 0.97097 0.80736 1.00227 1.19633 0.86842 0.95860 0.88666 1.43279 1.46027 1.25381 1.10382 1.18807 1.34031 0.89454 0.96454 0.92232 1.25118 0.97815 0.97047 0.97291 1.69818 1.39362 1.26024 1.17876 0.86283 0.82244 0.79904 0.78210 1.20556 1.21835 1.20464 1.21142 0.94390 0.97024 0.86026 1.23069 0.96432 0.98674 1.04748 1.23359 0.99230 0.96849 1.07410 1.43321 1.07168 1.08678 1.58249 0.75659 1.20742 0.84654 0.96489 1.15884 1.20053 1.01202 0.89519 1.01603 0.92165 0.92262 0.91626 0.85406 0.93854 0.93130 0.89586 0.88079 0.90711 0.91119 0.89784 0.91948 0.90798 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.05 36.01 0.36 -0.60 16 2 C -0.01 -0.10 7.09 -82.85 -0.59 -0.69 16 3 N -0.48 -11.39 11.25 -7.07 -0.08 -11.47 16 4 C 0.23 5.10 7.74 -155.41 -1.20 3.89 16 5 C 0.22 5.10 5.96 -5.20 -0.03 5.07 16 6 N -0.54 -13.15 2.77 -167.03 -0.46 -13.61 16 7 C -0.26 -7.07 8.04 -15.06 -0.12 -7.19 16 8 H 0.06 1.68 7.21 -52.48 -0.38 1.31 16 9 C 0.03 0.78 4.97 -17.43 -0.09 0.70 16 10 N -0.89 -25.23 11.44 55.49 0.63 -24.60 16 11 Si 0.90 22.54 29.61 -169.99 -5.03 17.51 16 12 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.12 2.60 6.61 -67.93 -0.45 2.15 16 16 C -0.19 -3.80 9.81 -26.69 -0.26 -4.06 16 17 C -0.23 -4.45 10.08 -26.69 -0.27 -4.71 16 18 N -0.57 -10.14 6.15 -6.54 -0.04 -10.18 16 19 H 0.41 5.86 8.96 -40.82 -0.37 5.50 16 20 C -0.06 -1.08 7.24 -81.60 -0.59 -1.67 16 21 C -0.07 -0.78 10.05 36.01 0.36 -0.42 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.74 7.80 -51.93 -0.40 0.34 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.13 3.43 5.51 -51.93 -0.29 3.15 16 26 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 27 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 28 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 29 H 0.10 2.25 6.96 -51.93 -0.36 1.89 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.83 7.99 -51.93 -0.41 1.42 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.80 7.81 -51.93 -0.41 0.39 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 295.71 15.07 4.46 4.46 Total: -1.00 -31.31 295.71 -8.53 -39.83 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.13 Total: 5.58 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.88 Total: -7.53 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.05 Total: -59.85 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.31 -8.53 -39.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600115537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.063 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds