Wall clock time and date at job start Sun Mar 29 2020 21:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34127 * 125.99083 * 2 1 4 4 C 1.30500 * 109.25764 * 179.97438 * 3 2 1 5 5 C 1.50692 * 125.65118 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47368 * 274.97613 * 5 4 3 7 7 C 1.36944 * 119.99841 * 90.00120 * 6 5 4 8 8 H 1.08003 * 119.99532 * 217.83447 * 7 6 5 9 9 C 1.38812 * 119.99843 * 37.83569 * 7 6 5 10 10 N 1.31612 * 120.00245 * 20.67975 * 9 7 6 11 11 Si 1.86803 * 119.99624 * 200.68263 * 9 7 6 12 12 H 1.48501 * 109.46947 * 90.00211 * 11 9 7 13 13 H 1.48491 * 109.47208 * 209.99707 * 11 9 7 14 14 H 1.48491 * 109.47306 * 330.00013 * 11 9 7 15 15 C 1.46497 * 120.00280 * 269.99936 * 6 5 4 16 16 C 1.53005 * 117.50147 * 194.24246 * 15 6 5 17 17 C 1.52997 * 117.49803 * 125.58189 * 15 6 5 18 18 N 1.35050 * 108.69683 * 0.02562 * 4 3 2 19 19 H 0.96991 * 126.39355 * 180.02562 * 18 4 3 20 20 C 1.34666 * 125.98845 * 179.97438 * 2 1 3 21 21 C 1.50707 * 126.59001 * 0.05477 * 20 2 1 22 22 H 1.09002 * 109.47396 * 90.01760 * 1 2 3 23 23 H 1.08996 * 109.47432 * 210.02394 * 1 2 3 24 24 H 1.09000 * 109.47082 * 330.02222 * 1 2 3 25 25 H 1.09004 * 109.47254 * 34.97804 * 5 4 3 26 26 H 1.09001 * 109.47185 * 154.97681 * 5 4 3 27 27 H 0.97007 * 120.00035 * 174.95035 * 10 9 7 28 28 H 1.09003 * 115.54691 * 339.91411 * 15 6 5 29 29 H 1.09001 * 117.49405 * 0.02562 * 16 15 6 30 30 H 1.09001 * 117.49725 * 145.02356 * 16 15 6 31 31 H 1.09006 * 117.50192 * 214.98176 * 17 15 6 32 32 H 1.09004 * 117.50243 * 359.97438 * 17 15 6 33 33 H 1.09003 * 109.46619 * 269.99727 * 21 20 2 34 34 H 1.08997 * 109.47067 * 29.99831 * 21 20 2 35 35 H 1.08995 * 109.47135 * 150.00263 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 0.0006 5 6 4.7386 1.6293 0.0013 6 7 5.0530 2.0225 -1.3744 7 6 4.4788 3.1422 -1.9147 8 1 4.1758 3.1469 -2.9514 9 6 4.2862 4.2709 -1.1301 10 7 4.9898 4.4355 -0.0300 11 14 3.0284 5.5562 -1.6355 12 1 1.7107 5.2208 -1.0385 13 1 3.4644 6.8916 -1.1540 14 1 2.9103 5.5780 -3.1155 15 6 5.9817 1.2180 -2.1722 16 6 6.5293 1.8393 -3.4587 17 6 5.4926 0.7154 -3.5320 18 7 3.5912 -0.6402 0.0004 19 1 4.3912 -1.1886 0.0010 20 6 2.2983 -1.0896 0.0005 21 6 1.8471 -2.5276 0.0000 22 1 -0.3634 -0.0003 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 4.5122 2.5180 0.5905 26 1 5.5946 1.1133 0.4363 27 1 4.9087 5.2572 0.4792 28 1 6.6471 0.5673 -1.6047 29 1 6.1988 2.8468 -3.7113 30 1 7.5548 1.5970 -3.7378 31 1 5.8365 -0.2658 -3.8594 32 1 4.4797 0.9829 -3.8329 33 1 1.7376 -2.8743 1.0276 34 1 0.8896 -2.6077 -0.5146 35 1 2.5879 -3.1406 -0.5133 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600115537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:10 Heat of formation + Delta-G solvation = 75.915052 kcal Electronic energy + Delta-G solvation = -16909.319683 eV Core-core repulsion = 14329.731968 eV Total energy + Delta-G solvation = -2579.587715 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.80763 -38.74691 -35.47528 -33.99825 -33.55480 -32.27868 -29.26182 -28.68979 -26.12974 -24.38538 -22.98932 -21.88882 -21.59777 -20.39924 -18.60264 -17.69666 -17.27360 -16.47075 -16.00471 -15.70722 -15.08926 -14.62449 -14.29283 -13.78500 -13.68039 -13.65176 -13.29640 -13.15319 -13.04707 -12.92613 -12.74763 -12.54455 -12.31586 -12.21801 -11.92581 -11.47720 -10.98417 -10.59967 -10.56618 -10.43896 -8.80849 -8.49834 -7.90328 -5.47597 1.24983 1.39655 1.48598 1.50600 2.27324 2.43315 2.50448 3.17203 3.42460 3.56353 3.82733 4.21480 4.25256 4.30844 4.43908 4.45454 4.53455 4.65925 4.68644 4.81761 4.90291 4.91072 5.01296 5.09172 5.12274 5.25638 5.31349 5.49677 5.52777 5.57786 5.67876 6.10930 6.42907 6.78410 7.10892 7.52864 7.79208 8.26847 9.09316 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.010104 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.558315 B = 2770.465153 C = 3599.742368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.050 4.050 3 N -0.530 5.530 4 C 0.206 3.794 5 C 0.224 3.776 6 N -0.551 5.551 7 C -0.255 4.255 8 H 0.041 0.959 9 C -0.015 4.015 10 N -0.910 5.910 11 Si 0.948 3.052 12 H -0.294 1.294 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.105 3.895 16 C -0.189 4.189 17 C -0.209 4.209 18 N -0.555 5.555 19 H 0.424 0.576 20 C -0.036 4.036 21 C -0.063 4.063 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.255 0.745 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -14.375 0.063 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.179 4.179 3 N -0.251 5.251 4 C -0.061 4.061 5 C 0.096 3.904 6 N -0.268 5.268 7 C -0.385 4.385 8 H 0.059 0.941 9 C -0.213 4.213 10 N -0.553 5.553 11 Si 0.777 3.223 12 H -0.221 1.221 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.003 4.003 16 C -0.228 4.228 17 C -0.250 4.250 18 N -0.160 5.160 19 H 0.264 0.736 20 C -0.152 4.152 21 C -0.121 4.121 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.379 -13.400 0.239 13.612 hybrid contribution -0.065 0.256 -0.359 0.446 sum -2.444 -13.144 -0.120 13.370 Atomic orbital electron populations 1.19997 0.86723 1.02731 1.01961 1.21208 0.97801 0.88680 1.10162 1.70156 1.01771 1.32109 1.21057 1.24849 0.96158 0.82323 1.02806 1.19319 0.88312 0.95021 0.87753 1.43383 1.47121 1.25302 1.10971 1.18760 1.33577 0.90476 0.95680 0.94117 1.25605 0.99272 0.98653 0.97778 1.69909 1.40592 1.26215 1.18628 0.85586 0.79939 0.78759 0.77996 1.22132 1.21022 1.19916 1.21467 0.94810 0.97569 0.86490 1.23073 0.98296 0.97347 1.04033 1.23266 0.97605 0.98288 1.05802 1.43168 1.08429 1.07413 1.57017 0.73624 1.21545 0.83582 0.98441 1.11670 1.20261 1.02419 0.85843 1.03602 0.91779 0.88648 0.93109 0.89405 0.91534 0.93529 0.86521 0.91244 0.87299 0.87431 0.92825 0.89695 0.89155 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.05 71.24 0.72 -0.98 16 2 C -0.05 -1.93 7.09 41.39 0.29 -1.64 16 3 N -0.53 -25.78 11.25 -176.29 -1.98 -27.76 16 4 C 0.21 9.06 7.74 138.12 1.07 10.13 16 5 C 0.22 10.62 5.96 85.63 0.51 11.13 16 6 N -0.55 -27.32 2.77 -682.35 -1.89 -29.20 16 7 C -0.25 -14.35 8.04 84.03 0.68 -13.67 16 8 H 0.04 2.40 7.21 -2.91 -0.02 2.38 16 9 C -0.01 -0.85 4.97 84.86 0.42 -0.43 16 10 N -0.91 -53.38 11.44 21.65 0.25 -53.13 16 11 Si 0.95 47.83 29.61 68.60 2.03 49.86 16 12 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 13 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 14 H -0.27 -13.41 7.11 99.48 0.71 -12.71 16 15 C 0.10 4.24 6.61 44.99 0.30 4.54 16 16 C -0.19 -7.27 9.81 30.62 0.30 -6.96 16 17 C -0.21 -7.76 10.08 30.62 0.31 -7.45 16 18 N -0.56 -18.60 6.15 -174.60 -1.07 -19.67 16 19 H 0.42 10.93 8.96 -92.72 -0.83 10.10 16 20 C -0.04 -1.14 7.24 40.95 0.30 -0.85 16 21 C -0.06 -1.21 10.05 71.24 0.72 -0.49 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.09 2.09 7.80 -2.39 -0.02 2.07 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 25 H 0.09 4.92 5.51 -2.38 -0.01 4.91 16 26 H 0.07 2.71 8.04 -2.39 -0.02 2.69 16 27 H 0.26 14.53 8.32 -92.70 -0.77 13.76 16 28 H 0.12 3.98 8.10 -2.39 -0.02 3.96 16 29 H 0.07 3.12 6.96 -2.39 -0.02 3.11 16 30 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 32 H 0.05 2.32 7.99 -2.38 -0.02 2.30 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.50 7.81 -2.39 -0.02 1.48 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -71.02 295.71 3.19 -67.83 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.26 Total: 18.75 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.60 Total: -6.67 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -4.70 Total: -129.77 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -71.02 3.19 -67.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600115537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.745 kcal (2) G-P(sol) polarization free energy of solvation -71.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds