Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00117 * 2 1 4 4 N 1.46896 * 109.46988 * 124.19006 * 3 2 1 5 5 C 1.46905 * 111.00187 * 61.63053 * 4 3 2 6 6 C 1.50700 * 109.46774 * 66.04381 * 5 4 3 7 7 H 1.07995 * 120.00521 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99759 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00414 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00295 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47129 * 59.99533 * 10 8 6 12 12 H 1.48503 * 109.47317 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46944 * 300.00087 * 10 8 6 14 14 C 1.46899 * 111.00350 * 297.67534 * 4 3 2 15 15 C 1.50700 * 109.46762 * 288.27429 * 14 4 3 16 16 N 1.30500 * 125.64948 * 274.64161 * 15 14 4 17 17 C 1.34124 * 109.25876 * 179.90015 * 16 15 14 18 18 C 1.34670 * 108.02008 * 0.36726 * 17 16 15 19 19 C 1.50700 * 126.59300 * 179.74747 * 18 17 16 20 20 N 1.35041 * 125.65352 * 94.95768 * 15 14 4 21 21 H 0.97003 * 126.39611 * 359.93045 * 20 15 14 22 22 H 1.07999 * 120.00495 * 180.02562 * 1 2 3 23 23 H 1.08000 * 119.99951 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99631 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47307 * 4.18928 * 3 2 1 26 26 H 1.09004 * 109.46829 * 244.18681 * 3 2 1 27 27 H 1.08991 * 109.46895 * 186.04007 * 5 4 3 28 28 H 1.08994 * 109.46783 * 306.04266 * 5 4 3 29 29 H 0.96996 * 120.00513 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.47015 * 48.26863 * 14 4 3 31 31 H 1.08998 * 109.47410 * 168.27504 * 14 4 3 32 32 H 1.07999 * 125.99054 * 180.19067 * 17 16 15 33 33 H 1.09001 * 109.46920 * 270.04006 * 19 18 17 34 34 H 1.08999 * 109.47186 * 30.04339 * 19 18 17 35 35 H 1.09000 * 109.47268 * 150.04748 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9823 1.3400 1.1456 5 6 3.9746 0.2602 1.0578 6 6 4.8721 0.4983 -0.1291 7 1 4.7210 1.3651 -0.7553 8 6 5.8864 -0.3906 -0.4157 9 7 6.0710 -1.4460 0.3471 10 14 6.9995 -0.0952 -1.8864 11 1 7.6973 1.2057 -1.7258 12 1 8.0025 -1.1868 -1.9753 13 1 6.1839 -0.0695 -3.1272 14 6 2.2447 1.2750 2.4143 15 6 1.5287 2.5806 2.6463 16 7 2.0450 3.6432 3.2007 17 6 1.1210 4.6146 3.2408 18 6 -0.0134 4.1332 2.6977 19 6 -1.3167 4.8726 2.5370 20 7 0.2447 2.8429 2.3205 21 1 -0.3783 2.2313 1.8977 22 1 -0.5401 -0.9353 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8499 -0.9353 0.0004 25 1 1.3576 2.1322 0.0751 26 1 2.6327 1.3959 -0.9252 27 1 4.5734 0.2422 1.9683 28 1 3.4627 -0.6949 0.9405 29 1 6.7843 -2.0715 0.1453 30 1 1.5172 0.4645 2.3706 31 1 2.9426 1.0932 3.2316 32 1 1.2613 5.6078 3.6412 33 1 -1.9326 4.7200 3.4232 34 1 -1.1175 5.9369 2.4116 35 1 -1.8425 4.4955 1.6598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600161584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = 79.414651 kcal Electronic energy + Delta-G solvation = -16513.288144 eV Core-core repulsion = 13933.852183 eV Total energy + Delta-G solvation = -2579.435961 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81939 -37.45182 -33.07496 -32.74292 -32.21346 -31.40922 -28.45662 -26.72801 -25.34277 -23.59633 -21.35214 -20.81978 -20.19298 -18.98911 -16.97876 -16.26358 -15.49149 -15.05986 -14.69119 -14.40538 -13.95932 -13.70358 -13.41456 -13.10314 -12.77912 -12.62579 -12.45846 -12.04368 -11.41463 -11.31278 -10.99230 -10.88173 -10.67101 -10.56312 -9.94165 -9.70483 -9.59996 -9.39106 -9.01840 -8.44838 -7.97796 -7.32598 -6.03530 -4.04615 2.22681 2.54889 3.29063 3.34241 3.38379 3.41185 3.45020 4.43227 4.78223 4.99434 5.08706 5.09784 5.27781 5.32482 5.42463 5.49680 5.57086 5.62666 5.74272 5.84393 6.00558 6.13373 6.27889 6.45103 6.51081 6.90305 6.94718 7.01186 7.26597 7.27871 7.59129 7.76854 8.01964 8.11437 8.45294 8.48380 9.01579 9.59353 11.07145 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033293 B = 0.006114 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.816324 B = 4578.802358 C = 4909.239372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.155 4.155 3 C 0.084 3.916 4 N -0.518 5.518 5 C 0.191 3.809 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.132 3.868 15 C 0.239 3.761 16 N -0.476 5.476 17 C -0.026 4.026 18 C -0.045 4.045 19 C -0.072 4.072 20 N -0.566 5.566 21 H 0.412 0.588 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.034 0.966 28 H 0.000 1.000 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 6.627 2.655 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.175 4.175 3 C -0.045 4.045 4 N -0.241 5.241 5 C 0.067 3.933 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.002 3.998 15 C -0.026 4.026 16 N -0.195 5.195 17 C -0.175 4.175 18 C -0.161 4.161 19 C -0.130 4.130 20 N -0.170 5.170 21 H 0.250 0.750 22 H 0.110 0.890 23 H 0.101 0.899 24 H 0.136 0.864 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.052 0.948 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.181 0.819 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.511 7.031 3.000 15.524 hybrid contribution -0.934 -1.056 -1.316 1.929 sum -14.446 5.975 1.684 15.723 Atomic orbital electron populations 1.23651 0.95929 1.00623 1.05798 1.24039 0.96196 1.01928 0.95311 1.21344 0.94129 0.91953 0.97035 1.62325 1.13372 1.50082 0.98331 1.19827 0.88771 0.86342 0.98391 1.21069 1.13840 1.08522 1.11075 0.91943 1.24949 0.97445 0.95094 0.96913 1.69937 1.32414 1.12879 1.38565 0.86568 0.80337 0.77823 0.82733 1.20105 1.21370 1.20353 1.20431 0.96090 0.87273 0.96016 1.23345 0.81453 0.98051 0.99711 1.70281 1.30692 0.99221 1.19291 1.22097 0.89481 0.99795 1.06094 1.21176 0.99489 0.86338 1.09065 1.20145 0.91558 0.99539 1.01755 1.43302 1.13046 1.12330 1.48351 0.75038 0.89040 0.89870 0.86374 0.92872 0.88648 0.94776 0.98244 0.92847 0.93821 0.88195 0.81855 0.91385 0.90196 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.01 14.32 29.01 0.42 -2.59 16 2 C -0.15 -2.62 7.49 -36.03 -0.27 -2.89 16 3 C 0.08 1.57 5.48 -4.98 -0.03 1.55 16 4 N -0.52 -11.04 4.65 -238.97 -1.11 -12.15 16 5 C 0.19 4.81 4.54 -4.97 -0.02 4.78 16 6 C -0.51 -13.95 8.49 -34.44 -0.29 -14.25 16 7 H 0.06 1.72 7.11 -52.49 -0.37 1.35 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 10 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.13 2.43 5.47 -4.98 -0.03 2.40 16 15 C 0.24 4.18 6.89 -155.42 -1.07 3.11 16 16 N -0.48 -9.06 11.25 -10.82 -0.12 -9.18 16 17 C -0.03 -0.40 11.79 -17.81 -0.21 -0.61 16 18 C -0.05 -0.60 7.24 -81.60 -0.59 -1.19 16 19 C -0.07 -0.62 10.44 36.01 0.38 -0.24 16 20 N -0.57 -7.92 5.74 -6.54 -0.04 -7.96 16 21 H 0.41 4.77 8.60 -40.82 -0.35 4.42 16 22 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 23 H 0.08 0.98 7.48 -52.49 -0.39 0.59 16 24 H 0.12 2.25 6.72 -52.49 -0.35 1.90 16 25 H 0.05 0.92 6.74 -51.93 -0.35 0.57 16 26 H 0.10 1.98 6.81 -51.93 -0.35 1.63 16 27 H 0.03 0.93 7.86 -51.93 -0.41 0.52 16 28 H 0.00 0.00 6.22 -51.93 -0.32 -0.33 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.04 0.73 6.82 -51.93 -0.35 0.38 16 31 H 0.10 1.91 7.81 -51.93 -0.41 1.50 16 32 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 294.41 15.07 4.44 4.44 Total: -1.00 -31.07 294.41 -7.85 -38.92 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.91 Total: 3.28 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.82 Total: -8.42 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.53 Total: -54.76 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.07 -7.85 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600161584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.333 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds