Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00117 * 2 1 4 4 N 1.46896 * 109.46988 * 124.19006 * 3 2 1 5 5 C 1.46905 * 111.00187 * 61.63053 * 4 3 2 6 6 C 1.50700 * 109.46774 * 66.04381 * 5 4 3 7 7 H 1.07995 * 120.00521 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99759 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00414 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00295 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47129 * 59.99533 * 10 8 6 12 12 H 1.48503 * 109.47317 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46944 * 300.00087 * 10 8 6 14 14 C 1.46899 * 111.00350 * 297.67534 * 4 3 2 15 15 C 1.50700 * 109.46762 * 288.27429 * 14 4 3 16 16 N 1.30500 * 125.64948 * 274.64161 * 15 14 4 17 17 C 1.34124 * 109.25876 * 179.90015 * 16 15 14 18 18 C 1.34670 * 108.02008 * 0.36726 * 17 16 15 19 19 C 1.50700 * 126.59300 * 179.74747 * 18 17 16 20 20 N 1.35041 * 125.65352 * 94.95768 * 15 14 4 21 21 H 0.97003 * 126.39611 * 359.93045 * 20 15 14 22 22 H 1.07999 * 120.00495 * 180.02562 * 1 2 3 23 23 H 1.08000 * 119.99951 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99631 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47307 * 4.18928 * 3 2 1 26 26 H 1.09004 * 109.46829 * 244.18681 * 3 2 1 27 27 H 1.08991 * 109.46895 * 186.04007 * 5 4 3 28 28 H 1.08994 * 109.46783 * 306.04266 * 5 4 3 29 29 H 0.96996 * 120.00513 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.47015 * 48.26863 * 14 4 3 31 31 H 1.08998 * 109.47410 * 168.27504 * 14 4 3 32 32 H 1.07999 * 125.99054 * 180.19067 * 17 16 15 33 33 H 1.09001 * 109.46920 * 270.04006 * 19 18 17 34 34 H 1.08999 * 109.47186 * 30.04339 * 19 18 17 35 35 H 1.09000 * 109.47268 * 150.04748 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9823 1.3400 1.1456 5 6 3.9746 0.2602 1.0578 6 6 4.8721 0.4983 -0.1291 7 1 4.7210 1.3651 -0.7553 8 6 5.8864 -0.3906 -0.4157 9 7 6.0710 -1.4460 0.3471 10 14 6.9995 -0.0952 -1.8864 11 1 7.6973 1.2057 -1.7258 12 1 8.0025 -1.1868 -1.9753 13 1 6.1839 -0.0695 -3.1272 14 6 2.2447 1.2750 2.4143 15 6 1.5287 2.5806 2.6463 16 7 2.0450 3.6432 3.2007 17 6 1.1210 4.6146 3.2408 18 6 -0.0134 4.1332 2.6977 19 6 -1.3167 4.8726 2.5370 20 7 0.2447 2.8429 2.3205 21 1 -0.3783 2.2313 1.8977 22 1 -0.5401 -0.9353 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8499 -0.9353 0.0004 25 1 1.3576 2.1322 0.0751 26 1 2.6327 1.3959 -0.9252 27 1 4.5734 0.2422 1.9683 28 1 3.4627 -0.6949 0.9405 29 1 6.7843 -2.0715 0.1453 30 1 1.5172 0.4645 2.3706 31 1 2.9426 1.0932 3.2316 32 1 1.2613 5.6078 3.6412 33 1 -1.9326 4.7200 3.4232 34 1 -1.1175 5.9369 2.4116 35 1 -1.8425 4.4955 1.6598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600161584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = 57.908601 kcal Electronic energy + Delta-G solvation = -16514.220716 eV Core-core repulsion = 13933.852183 eV Total energy + Delta-G solvation = -2580.368534 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.01017 -39.03751 -34.92928 -34.12541 -33.51676 -32.62159 -29.96567 -28.38465 -26.66890 -25.25712 -22.98427 -21.99438 -21.44450 -20.40330 -18.48255 -18.00673 -17.00903 -16.77029 -16.10955 -15.89956 -15.40617 -14.96245 -14.72350 -14.35279 -14.04079 -13.81084 -13.51148 -13.24070 -13.19604 -12.91507 -12.69332 -12.56431 -12.35415 -12.25044 -11.86084 -11.39420 -10.94503 -10.82953 -10.60556 -10.34543 -9.15790 -8.97623 -8.18547 -6.27544 1.07154 1.32119 1.40928 1.44170 1.51714 2.14384 2.21829 2.42270 3.14211 3.43828 3.57473 3.98482 4.11676 4.13970 4.25463 4.37197 4.45243 4.55749 4.64293 4.81214 4.85355 4.90861 5.02635 5.14727 5.23245 5.28939 5.40017 5.61272 5.67785 5.76516 5.88732 6.06220 6.29814 6.48444 6.60360 6.86123 7.25447 7.41025 8.91816 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033293 B = 0.006114 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.816324 B = 4578.802358 C = 4909.239372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.193 4.193 3 C 0.094 3.906 4 N -0.534 5.534 5 C 0.209 3.791 6 C -0.521 4.521 7 H 0.057 0.943 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.140 3.860 15 C 0.214 3.786 16 N -0.519 5.519 17 C -0.061 4.061 18 C -0.017 4.017 19 C -0.070 4.070 20 N -0.553 5.553 21 H 0.425 0.575 22 H 0.112 0.888 23 H 0.111 0.889 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.001 0.999 28 H -0.014 1.014 29 H 0.264 0.736 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.183 0.817 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.496 7.841 1.736 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.212 4.212 3 C -0.034 4.034 4 N -0.257 5.257 5 C 0.083 3.917 6 C -0.559 4.559 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.789 3.211 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.011 3.989 15 C -0.050 4.050 16 N -0.239 5.239 17 C -0.208 4.208 18 C -0.133 4.133 19 C -0.128 4.128 20 N -0.159 5.159 21 H 0.265 0.735 22 H 0.131 0.869 23 H 0.129 0.871 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.019 0.981 28 H 0.004 0.996 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.200 0.800 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.277 8.246 2.075 18.364 hybrid contribution -0.246 -1.363 -0.977 1.694 sum -16.523 6.883 1.098 17.933 Atomic orbital electron populations 1.23955 0.94386 1.02899 0.99890 1.23600 0.97339 0.99556 1.00754 1.21180 0.93724 0.93831 0.94661 1.62158 1.14588 1.48384 1.00608 1.19409 0.89177 0.87122 0.95981 1.21361 1.14512 1.08338 1.11719 0.92476 1.25800 0.98880 0.94763 0.99730 1.70058 1.33136 1.13745 1.40259 0.85517 0.78396 0.77730 0.79457 1.19828 1.20709 1.19218 1.20236 0.95919 0.88973 0.93822 1.22819 0.82950 0.97383 1.01884 1.70168 1.32928 1.00602 1.20205 1.22563 0.89953 1.00350 1.07952 1.21889 1.00456 0.85426 1.05574 1.20349 0.89184 0.99821 1.03439 1.43199 1.11991 1.12971 1.47699 0.73469 0.86949 0.87056 0.89430 0.90909 0.91516 0.98117 0.99618 0.92700 0.92106 0.90216 0.79990 0.89445 0.88584 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 14.32 67.78 0.97 -3.16 16 2 C -0.19 -6.43 7.49 25.65 0.19 -6.24 16 3 C 0.09 3.56 5.48 85.56 0.47 4.03 16 4 N -0.53 -23.66 4.65 -909.96 -4.23 -27.89 16 5 C 0.21 11.13 4.54 85.56 0.39 11.51 16 6 C -0.52 -29.84 8.49 25.60 0.22 -29.62 16 7 H 0.06 3.26 7.11 -2.91 -0.02 3.24 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 10 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 C 0.14 5.32 5.47 85.56 0.47 5.78 16 15 C 0.21 7.41 6.89 138.13 0.95 8.36 16 16 N -0.52 -19.83 11.25 -188.14 -2.12 -21.94 16 17 C -0.06 -1.79 11.79 83.52 0.98 -0.80 16 18 C -0.02 -0.39 7.24 40.95 0.30 -0.10 16 19 C -0.07 -0.87 10.44 71.24 0.74 -0.13 16 20 N -0.55 -14.07 5.74 -174.60 -1.00 -15.07 16 21 H 0.43 8.24 8.60 -92.71 -0.80 7.45 16 22 H 0.11 2.28 8.06 -2.91 -0.02 2.26 16 23 H 0.11 2.06 7.48 -2.91 -0.02 2.04 16 24 H 0.09 3.47 6.72 -2.91 -0.02 3.45 16 25 H 0.07 2.42 6.74 -2.39 -0.02 2.40 16 26 H 0.07 2.86 6.81 -2.38 -0.02 2.85 16 27 H 0.00 0.04 7.86 -2.39 -0.02 0.02 16 28 H -0.01 -0.76 6.22 -2.39 -0.01 -0.78 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.06 2.05 6.82 -2.39 -0.02 2.03 16 31 H 0.08 3.26 7.81 -2.39 -0.02 3.24 16 32 H 0.18 4.34 8.06 -2.91 -0.02 4.31 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -70.45 294.41 1.39 -69.06 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.28 Total: 14.19 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 6.14 Total: -9.53 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -7.07 Total: -120.66 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.45 1.39 -69.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600161584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.968 kcal (2) G-P(sol) polarization free energy of solvation -70.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds