Wall clock time and date at job start Sun Mar 29 2020 22:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47510 * 2 1 4 4 C 1.53006 * 109.47038 * 239.99731 * 2 1 3 5 5 C 1.50696 * 109.47084 * 175.00191 * 4 2 1 6 6 C 1.38386 * 120.00028 * 124.99990 * 5 4 2 7 7 N 1.32124 * 119.99728 * 179.97438 * 6 5 4 8 8 C 1.32149 * 120.00306 * 0.02562 * 7 6 5 9 9 C 1.38341 * 119.99880 * 0.02562 * 8 7 6 10 10 N 1.32127 * 120.00078 * 304.98097 * 5 4 2 11 11 N 1.46903 * 109.46845 * 120.00283 * 2 1 3 12 12 C 1.46894 * 110.99948 * 274.99523 * 11 2 1 13 13 C 1.53003 * 109.47262 * 180.02562 * 12 11 2 14 14 C 1.50701 * 109.47089 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00221 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99923 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00021 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00071 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47275 * 60.00164 * 18 16 14 20 20 H 1.48498 * 109.47431 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47426 * 300.00172 * 18 16 14 22 22 H 1.09002 * 109.47059 * 300.00512 * 1 2 3 23 23 H 1.09002 * 109.46788 * 59.99695 * 1 2 3 24 24 H 1.08991 * 109.47510 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46525 * 55.00305 * 4 2 1 26 26 H 1.09000 * 109.46908 * 295.00593 * 4 2 1 27 27 H 1.08005 * 120.00221 * 0.02562 * 6 5 4 28 28 H 1.08001 * 120.00494 * 179.97438 * 8 7 6 29 29 H 1.08010 * 119.99675 * 179.97438 * 9 8 7 30 30 H 1.00901 * 110.99644 * 151.04616 * 11 2 1 31 31 H 1.08998 * 109.47572 * 300.00342 * 12 11 2 32 32 H 1.09004 * 109.46968 * 60.00219 * 12 11 2 33 33 H 1.08998 * 109.46668 * 299.99956 * 13 12 11 34 34 H 1.08996 * 109.46993 * 59.99935 * 13 12 11 35 35 H 0.96998 * 120.00372 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6151 -1.3127 6 6 4.3129 -1.7598 -1.4132 7 7 5.6297 -1.6665 -1.4694 8 6 6.2104 -0.4801 -1.4291 9 6 5.4396 0.6642 -1.3275 10 7 4.1225 0.5711 -1.2728 11 7 2.0196 -0.6926 1.1994 12 6 2.0825 0.2224 2.3469 13 6 2.5962 -0.5331 3.5742 14 6 2.6601 0.4056 4.7515 15 1 2.3635 1.4376 4.6360 16 6 3.0961 -0.0535 5.9763 17 7 3.4568 -1.3103 6.1170 18 14 3.1746 1.1097 7.4357 19 1 1.8180 1.6451 7.7156 20 1 3.6733 0.3765 8.6269 21 1 4.0955 2.2325 7.1249 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6054 -0.2618 -2.1369 26 1 1.7515 -1.7716 -1.2056 27 1 3.8383 -2.7294 -1.4466 28 1 7.2867 -0.4039 -1.4745 29 1 5.9143 1.6338 -1.2942 30 1 2.9172 -1.1206 1.0287 31 1 2.7589 1.0460 2.1183 32 1 1.0871 0.6162 2.5525 33 1 1.9200 -1.3568 3.8030 34 1 3.5916 -0.9265 3.3683 35 1 3.7632 -1.6335 6.9787 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602603502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:45 Heat of formation + Delta-G solvation = 30.083926 kcal Electronic energy + Delta-G solvation = -16135.649269 eV Core-core repulsion = 13554.074167 eV Total energy + Delta-G solvation = -2581.575102 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15072 -37.23246 -34.39498 -33.55247 -32.34132 -30.91715 -28.06528 -27.35286 -24.68647 -24.09597 -22.94127 -20.50262 -20.13377 -17.56507 -17.01224 -16.29085 -16.02168 -15.47588 -15.08084 -14.49668 -14.16092 -14.01722 -13.20232 -12.84638 -12.48312 -12.25919 -12.08674 -11.73442 -11.60419 -11.51349 -11.16300 -11.02685 -10.92000 -10.73160 -10.51876 -9.91518 -9.40836 -9.21405 -9.11848 -9.07250 -8.33682 -7.79760 -5.97988 -4.00653 0.71722 1.09717 3.34293 3.38393 3.40975 3.63456 3.98098 4.22962 4.38091 4.45481 4.68876 4.73511 5.01656 5.14924 5.26728 5.37650 5.38132 5.52909 5.61184 5.79516 5.88991 6.04190 6.22370 6.33012 6.38924 6.44021 6.56876 7.02326 7.22635 7.51614 7.73345 7.74265 7.84321 7.97001 8.10076 8.45647 9.06347 9.62894 11.13473 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.005777 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.106660 B = 4845.289866 C = 5479.197450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 H 0.051 0.949 4 C -0.069 4.069 5 C 0.083 3.917 6 C 0.054 3.946 7 N -0.436 5.436 8 C 0.039 3.961 9 C 0.055 3.945 10 N -0.434 5.434 11 N -0.685 5.685 12 C 0.068 3.932 13 C 0.027 3.973 14 C -0.522 4.522 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.278 1.278 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.170 0.830 28 H 0.168 0.832 29 H 0.168 0.832 30 H 0.329 0.671 31 H 0.013 0.987 32 H 0.059 0.941 33 H 0.025 0.975 34 H 0.010 0.990 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 1.598 -17.283 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.069 0.931 4 C -0.108 4.108 5 C -0.057 4.057 6 C -0.106 4.106 7 N -0.150 5.150 8 C -0.120 4.120 9 C -0.105 4.105 10 N -0.150 5.150 11 N -0.316 5.316 12 C -0.060 4.060 13 C -0.011 4.011 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.187 0.813 28 H 0.185 0.815 29 H 0.185 0.815 30 H 0.147 0.853 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.028 0.972 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.182 1.221 -16.985 17.030 hybrid contribution 1.048 1.185 0.727 1.741 sum 1.230 2.406 -16.258 16.481 Atomic orbital electron populations 1.21766 0.94500 1.02173 1.01085 1.21465 0.95745 0.96482 0.88721 0.93106 1.20810 0.87272 1.03095 0.99651 1.22376 0.98565 0.89608 0.95195 1.23687 0.90110 1.00022 0.96781 1.68434 1.11349 1.27068 1.08146 1.23735 1.02044 0.88949 0.97288 1.23773 0.90235 1.00573 0.95938 1.68264 1.11440 1.26786 1.08496 1.60739 1.32566 1.34170 1.04150 1.22170 0.99540 0.93471 0.90866 1.19047 0.96000 0.95800 0.90214 1.21141 1.43984 0.96333 0.94591 0.92842 1.25002 0.95404 0.95104 0.98832 1.69963 1.44411 1.14375 1.24535 0.86648 0.78431 0.80880 0.81972 1.20174 1.21243 1.20327 0.92316 0.93143 0.92074 0.89308 0.88972 0.81312 0.81497 0.81472 0.85338 0.96863 0.92228 0.95659 0.97214 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.41 37.16 0.35 -1.46 16 2 C 0.09 1.27 2.58 -67.71 -0.17 1.10 16 3 H 0.05 0.83 7.47 -51.93 -0.39 0.44 16 4 C -0.07 -0.81 5.23 -27.88 -0.15 -0.96 16 5 C 0.08 1.08 5.05 -82.41 -0.42 0.66 16 6 C 0.05 0.67 10.85 -17.37 -0.19 0.49 16 7 N -0.44 -5.78 10.50 -13.06 -0.14 -5.92 16 8 C 0.04 0.44 11.22 -17.38 -0.20 0.25 16 9 C 0.05 0.64 11.22 -17.37 -0.20 0.44 16 10 N -0.43 -6.05 9.96 -9.29 -0.09 -6.15 16 11 N -0.68 -12.57 6.31 -106.72 -0.67 -13.24 16 12 C 0.07 1.49 5.42 -3.83 -0.02 1.47 16 13 C 0.03 0.73 5.23 -27.88 -0.15 0.58 16 14 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.06 0.86 7.45 -51.93 -0.39 0.47 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.09 0.94 7.89 -51.93 -0.41 0.53 16 27 H 0.17 1.67 7.96 -52.48 -0.42 1.25 16 28 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.33 6.13 7.37 -39.29 -0.29 5.84 16 31 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 32 H 0.06 1.31 7.44 -51.93 -0.39 0.92 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 298.21 15.07 4.49 4.49 Total: -1.00 -32.96 298.21 -7.43 -40.40 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.20 Total: 1.47 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.54 Total: -11.36 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.17 Total: -52.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.96 -7.43 -40.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.480 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds