Wall clock time and date at job start Sun Mar 29 2020 22:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47510 * 2 1 4 4 C 1.53006 * 109.47038 * 239.99731 * 2 1 3 5 5 C 1.50696 * 109.47084 * 175.00191 * 4 2 1 6 6 C 1.38386 * 120.00028 * 124.99990 * 5 4 2 7 7 N 1.32124 * 119.99728 * 179.97438 * 6 5 4 8 8 C 1.32149 * 120.00306 * 0.02562 * 7 6 5 9 9 C 1.38341 * 119.99880 * 0.02562 * 8 7 6 10 10 N 1.32127 * 120.00078 * 304.98097 * 5 4 2 11 11 N 1.46903 * 109.46845 * 120.00283 * 2 1 3 12 12 C 1.46894 * 110.99948 * 274.99523 * 11 2 1 13 13 C 1.53003 * 109.47262 * 180.02562 * 12 11 2 14 14 C 1.50701 * 109.47089 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00221 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99923 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00021 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00071 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47275 * 60.00164 * 18 16 14 20 20 H 1.48498 * 109.47431 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47426 * 300.00172 * 18 16 14 22 22 H 1.09002 * 109.47059 * 300.00512 * 1 2 3 23 23 H 1.09002 * 109.46788 * 59.99695 * 1 2 3 24 24 H 1.08991 * 109.47510 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46525 * 55.00305 * 4 2 1 26 26 H 1.09000 * 109.46908 * 295.00593 * 4 2 1 27 27 H 1.08005 * 120.00221 * 0.02562 * 6 5 4 28 28 H 1.08001 * 120.00494 * 179.97438 * 8 7 6 29 29 H 1.08010 * 119.99675 * 179.97438 * 9 8 7 30 30 H 1.00901 * 110.99644 * 151.04616 * 11 2 1 31 31 H 1.08998 * 109.47572 * 300.00342 * 12 11 2 32 32 H 1.09004 * 109.46968 * 60.00219 * 12 11 2 33 33 H 1.08998 * 109.46668 * 299.99956 * 13 12 11 34 34 H 1.08996 * 109.46993 * 59.99935 * 13 12 11 35 35 H 0.96998 * 120.00372 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6151 -1.3127 6 6 4.3129 -1.7598 -1.4132 7 7 5.6297 -1.6665 -1.4694 8 6 6.2104 -0.4801 -1.4291 9 6 5.4396 0.6642 -1.3275 10 7 4.1225 0.5711 -1.2728 11 7 2.0196 -0.6926 1.1994 12 6 2.0825 0.2224 2.3469 13 6 2.5962 -0.5331 3.5742 14 6 2.6601 0.4056 4.7515 15 1 2.3635 1.4376 4.6360 16 6 3.0961 -0.0535 5.9763 17 7 3.4568 -1.3103 6.1170 18 14 3.1746 1.1097 7.4357 19 1 1.8180 1.6451 7.7156 20 1 3.6733 0.3765 8.6269 21 1 4.0955 2.2325 7.1249 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6054 -0.2618 -2.1369 26 1 1.7515 -1.7716 -1.2056 27 1 3.8383 -2.7294 -1.4466 28 1 7.2867 -0.4039 -1.4745 29 1 5.9143 1.6338 -1.2942 30 1 2.9172 -1.1206 1.0287 31 1 2.7589 1.0460 2.1183 32 1 1.0871 0.6162 2.5525 33 1 1.9200 -1.3568 3.8030 34 1 3.5916 -0.9265 3.3683 35 1 3.7632 -1.6335 6.9787 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602603502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:45 Heat of formation + Delta-G solvation = 6.480146 kcal Electronic energy + Delta-G solvation = -16136.672806 eV Core-core repulsion = 13554.074167 eV Total energy + Delta-G solvation = -2582.598639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.07214 -38.55786 -35.79759 -35.07313 -33.83391 -32.29624 -29.86254 -28.31698 -26.10211 -25.58388 -23.99505 -22.45542 -21.31762 -18.63528 -18.40458 -17.88283 -16.96172 -16.90787 -16.46110 -16.26492 -15.50411 -15.10027 -14.72851 -14.37478 -13.92153 -13.61189 -13.22954 -13.14165 -12.91475 -12.83726 -12.63693 -12.48930 -12.39110 -12.28511 -12.03432 -11.66699 -11.44053 -11.26208 -10.59600 -10.15089 -10.00803 -9.33352 -8.23347 -6.35762 -0.18130 0.15782 1.37723 1.41411 1.49550 2.38061 2.71889 3.09558 3.12236 3.28300 3.38543 3.53966 3.81728 3.98736 4.27231 4.32900 4.42967 4.49112 4.50759 4.57459 4.70244 4.84245 4.91676 4.98366 5.01860 5.14524 5.40074 5.44153 5.46638 5.62024 5.74968 6.10475 6.25911 6.31912 6.46604 6.80564 6.82263 7.33677 8.88714 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.005777 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.106660 B = 4845.289866 C = 5479.197450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.086 3.914 3 H 0.035 0.965 4 C -0.061 4.061 5 C 0.069 3.931 6 C 0.045 3.955 7 N -0.461 5.461 8 C 0.038 3.962 9 C 0.046 3.954 10 N -0.462 5.462 11 N -0.685 5.685 12 C 0.089 3.911 13 C 0.036 3.964 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.267 1.267 22 H 0.039 0.961 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.189 0.811 28 H 0.199 0.801 29 H 0.195 0.805 30 H 0.327 0.673 31 H 0.005 0.995 32 H 0.061 0.939 33 H -0.003 1.003 34 H -0.018 1.018 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 2.535 -17.811 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.023 4.023 3 H 0.053 0.947 4 C -0.100 4.100 5 C -0.071 4.071 6 C -0.114 4.114 7 N -0.175 5.175 8 C -0.122 4.122 9 C -0.113 4.113 10 N -0.178 5.178 11 N -0.316 5.316 12 C -0.040 4.040 13 C -0.002 4.002 14 C -0.587 4.587 15 H 0.077 0.923 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.792 3.208 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.192 1.192 22 H 0.058 0.942 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.206 0.794 28 H 0.215 0.785 29 H 0.212 0.788 30 H 0.144 0.856 31 H 0.023 0.977 32 H 0.079 0.921 33 H 0.015 0.985 34 H 0.000 1.000 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.009 2.158 -17.538 17.671 hybrid contribution 1.140 0.875 0.843 1.666 sum 1.148 3.033 -16.695 17.008 Atomic orbital electron populations 1.21750 0.93048 1.02696 1.01623 1.21552 0.96742 0.95641 0.88402 0.94719 1.20797 0.86619 1.03898 0.98637 1.22570 0.99204 0.89637 0.95703 1.24025 0.90114 1.00825 0.96483 1.68467 1.11867 1.28143 1.09038 1.24275 1.03566 0.88338 0.95980 1.24282 0.89773 1.02032 0.95253 1.68259 1.12690 1.27496 1.09352 1.60699 1.32407 1.33661 1.04796 1.21750 0.98847 0.92951 0.90492 1.18878 0.93875 0.95119 0.92281 1.21564 1.44430 0.96918 0.95741 0.92323 1.25996 0.94576 0.96917 1.02169 1.70101 1.44965 1.16454 1.25565 0.85459 0.79060 0.78560 0.77722 1.18948 1.20541 1.19228 0.94201 0.90197 0.91539 0.87073 0.87282 0.79429 0.78459 0.78817 0.85624 0.97679 0.92104 0.98481 0.99985 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.41 71.98 0.68 -2.60 16 2 C 0.09 2.45 2.58 44.92 0.12 2.57 16 3 H 0.03 1.12 7.47 -2.39 -0.02 1.10 16 4 C -0.06 -1.31 5.23 29.85 0.16 -1.15 16 5 C 0.07 1.72 5.05 42.55 0.21 1.93 16 6 C 0.04 1.08 10.85 84.68 0.92 2.00 16 7 N -0.46 -11.85 10.50 -195.23 -2.05 -13.90 16 8 C 0.04 0.81 11.22 84.67 0.95 1.76 16 9 C 0.05 1.03 11.22 84.67 0.95 1.98 16 10 N -0.46 -12.50 9.96 -183.29 -1.83 -14.33 16 11 N -0.68 -25.17 6.31 -491.57 -3.10 -28.27 16 12 C 0.09 3.98 5.42 86.31 0.47 4.45 16 13 C 0.04 2.01 5.23 29.85 0.16 2.16 16 14 C -0.55 -32.44 9.11 25.60 0.23 -32.21 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 16 C 0.00 0.09 5.46 84.66 0.46 0.55 16 17 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 18 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H 0.04 1.12 7.45 -2.39 -0.02 1.10 16 23 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.11 1.97 7.89 -2.39 -0.02 1.95 16 27 H 0.19 3.51 7.96 -2.91 -0.02 3.48 16 28 H 0.20 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.20 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.33 12.30 7.37 -89.69 -0.66 11.64 16 31 H 0.01 0.23 8.06 -2.39 -0.02 0.21 16 32 H 0.06 2.70 7.44 -2.38 -0.02 2.68 16 33 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -71.68 298.21 1.05 -70.63 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.41 Total: 15.12 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 5.30 Total: -18.56 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -6.69 Total: -114.32 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.68 1.05 -70.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.114 kcal (2) G-P(sol) polarization free energy of solvation -71.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds