Wall clock time and date at job start Sun Mar 29 2020 22:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99909 * 2 1 4 4 C 1.50704 * 109.47292 * 66.05011 * 3 2 1 5 5 C 1.39872 * 126.03599 * 269.69115 * 4 3 2 6 6 N 1.30837 * 108.19812 * 179.81408 * 5 4 3 7 7 N 1.40082 * 108.20582 * 0.44045 * 6 5 4 8 8 H 0.97003 * 126.03712 * 179.69520 * 7 6 5 9 9 C 1.34940 * 107.92863 * 359.71658 * 7 6 5 10 10 C 1.46902 * 110.99461 * 236.04622 * 2 1 3 11 11 C 1.53002 * 109.47395 * 288.63669 * 10 2 1 12 12 C 1.50699 * 115.54805 * 305.89363 * 11 10 2 13 13 H 1.07997 * 120.00184 * 144.41022 * 12 11 10 14 14 C 1.37879 * 119.99983 * 324.40078 * 12 11 10 15 15 N 1.31519 * 120.00218 * 4.59804 * 14 12 11 16 16 Si 1.86800 * 120.00037 * 184.59986 * 14 12 11 17 17 H 1.48503 * 109.47041 * 59.99951 * 16 14 12 18 18 H 1.48502 * 109.47173 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47223 * 300.00179 * 16 14 12 20 20 C 1.52998 * 117.49675 * 160.21714 * 11 10 2 21 21 C 1.52995 * 117.49678 * 91.55578 * 11 10 2 22 22 H 1.08998 * 109.47299 * 188.86363 * 1 2 3 23 23 H 1.09000 * 109.46986 * 308.86028 * 1 2 3 24 24 H 1.09002 * 109.47491 * 68.86158 * 1 2 3 25 25 H 1.09004 * 109.47061 * 186.04461 * 3 2 1 26 26 H 1.08996 * 109.47488 * 306.04406 * 3 2 1 27 27 H 1.08000 * 125.89726 * 359.97438 * 5 4 3 28 28 H 1.08006 * 126.13317 * 180.02562 * 9 7 6 29 29 H 1.08997 * 109.47187 * 48.64267 * 10 2 1 30 30 H 1.09004 * 109.46559 * 168.64045 * 10 2 1 31 31 H 0.96998 * 120.00297 * 184.99952 * 15 14 12 32 32 H 1.08994 * 117.50032 * 0.02562 * 20 11 10 33 33 H 1.09005 * 117.49178 * 145.02216 * 20 11 10 34 34 H 1.08993 * 117.50014 * 214.97874 * 21 11 10 35 35 H 1.09004 * 117.50130 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 6 0.4791 2.7915 1.5465 6 7 0.5219 3.2136 2.7842 7 7 1.7149 2.7588 3.3606 8 1 2.0102 2.9272 4.2692 9 6 2.3811 2.0457 2.4287 10 6 1.9954 -0.7660 -1.1376 11 6 1.7477 -2.2580 -0.9062 12 6 2.2684 -2.8089 0.3962 13 1 1.7179 -3.5795 0.9152 14 6 3.4478 -2.3292 0.9253 15 7 4.0717 -1.3292 0.3417 16 14 4.1598 -3.0997 2.4709 17 1 4.4357 -4.5380 2.2250 18 1 5.4230 -2.4075 2.8323 19 1 3.1865 -2.9657 3.5843 20 6 1.7854 -3.1782 -2.1280 21 6 0.4494 -2.8522 -1.4558 22 1 -0.3634 -1.0154 0.1583 23 1 -0.3633 0.6448 0.8002 24 1 -0.3634 0.3706 -0.9585 25 1 3.0798 1.3444 -0.1082 26 1 1.5612 1.9273 -0.8309 27 1 -0.3145 2.9825 0.8393 28 1 3.3369 1.5603 2.5612 29 1 1.4916 -0.4515 -2.0516 30 1 3.0662 -0.5859 -1.2326 31 1 4.9368 -1.0390 0.6706 32 1 1.9871 -2.7207 -3.0965 33 1 2.1866 -4.1822 -1.9896 34 1 -0.0279 -3.6418 -0.8756 35 1 -0.2286 -2.1800 -1.9819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602794954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:43 Heat of formation + Delta-G solvation = 116.311695 kcal Electronic energy + Delta-G solvation = -17076.644193 eV Core-core repulsion = 14498.808207 eV Total energy + Delta-G solvation = -2577.835985 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74595 -37.35291 -34.87616 -31.95863 -31.11631 -30.17517 -26.46006 -25.77519 -25.06012 -21.89612 -21.12525 -21.04784 -19.40886 -18.76357 -17.24087 -16.01342 -14.75356 -14.60777 -14.15258 -13.99326 -13.72577 -13.59742 -13.16810 -12.63981 -12.28991 -11.73006 -11.35589 -11.17297 -11.06041 -10.90693 -10.66064 -10.45807 -10.36142 -10.08330 -9.85086 -9.33446 -9.24772 -8.73645 -8.54308 -8.08153 -7.98147 -6.90091 -5.77990 -3.85928 2.30272 3.18605 3.27315 3.37055 3.38997 3.45296 4.50460 5.06381 5.18464 5.38517 5.44086 5.70772 5.88783 5.95025 6.15183 6.20754 6.30743 6.31429 6.45731 6.57226 6.68166 6.73444 6.79544 6.81541 6.94502 7.01475 7.08251 7.32641 7.41606 7.62265 7.71515 8.00786 8.11716 8.38496 8.45874 8.68198 9.08589 9.73539 11.18460 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.010173 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.455994 B = 2751.741117 C = 3645.585148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.489 5.489 3 C 0.137 3.863 4 C -0.211 4.211 5 C 0.052 3.948 6 N -0.312 5.312 7 N -0.487 5.487 8 H 0.434 0.566 9 C 0.078 3.922 10 C 0.109 3.891 11 C 0.067 3.933 12 C -0.467 4.467 13 H 0.050 0.950 14 C 0.088 3.912 15 N -0.871 5.871 16 Si 0.886 3.114 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.280 1.280 20 C -0.212 4.212 21 C -0.218 4.218 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.000 1.000 25 H 0.083 0.917 26 H 0.017 0.983 27 H 0.174 0.826 28 H 0.175 0.825 29 H -0.021 1.021 30 H 0.118 0.882 31 H 0.253 0.747 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 6.853 1.125 7.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.211 5.211 3 C 0.008 3.992 4 C -0.222 4.222 5 C -0.135 4.135 6 N -0.135 5.135 7 N -0.195 5.195 8 H 0.276 0.724 9 C -0.069 4.069 10 C -0.018 4.018 11 C 0.066 3.934 12 C -0.505 4.505 13 H 0.069 0.931 14 C -0.115 4.115 15 N -0.509 5.509 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.206 1.206 20 C -0.251 4.251 21 C -0.255 4.255 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.018 0.982 25 H 0.101 0.899 26 H 0.035 0.965 27 H 0.191 0.809 28 H 0.193 0.807 29 H -0.003 1.003 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.342 7.446 2.500 8.196 hybrid contribution 0.554 -0.640 -0.115 0.855 sum -1.788 6.806 2.385 7.430 Atomic orbital electron populations 1.22389 0.90164 1.01782 0.97535 1.61583 1.04748 1.10000 1.44763 1.20240 1.00481 0.88432 0.90040 1.20144 0.96650 1.07092 0.98352 1.23741 0.98473 0.97532 0.93738 1.77179 1.02374 1.23847 1.10052 1.46216 1.16499 1.43349 1.13428 0.72375 1.22426 0.99342 0.95858 0.89278 1.21835 1.02103 0.91940 0.85913 1.18994 0.92029 0.90252 0.92134 1.20271 1.06702 1.19488 1.03989 0.93139 1.24709 0.97071 0.93643 0.96036 1.69836 1.14358 1.25284 1.41408 0.86787 0.78144 0.79272 0.84326 1.20776 1.21537 1.20551 1.23003 1.01616 1.02184 0.98260 1.22921 0.91471 1.04532 1.06595 0.91468 0.93089 0.98159 0.89861 0.96549 0.80853 0.80741 1.00326 0.86474 0.93644 0.92017 0.90623 0.91069 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.06 60.07 0.54 1.14 16 2 N -0.49 -10.45 4.07 -244.36 -1.00 -11.45 16 3 C 0.14 2.56 5.44 -4.98 -0.03 2.54 16 4 C -0.21 -3.64 4.96 -105.05 -0.52 -4.16 16 5 C 0.05 0.84 10.43 -17.36 -0.18 0.66 16 6 N -0.31 -5.11 12.70 30.63 0.39 -4.72 16 7 N -0.49 -7.06 7.36 30.45 0.22 -6.84 16 8 H 0.43 4.73 8.96 -182.61 -1.64 3.09 16 9 C 0.08 1.26 11.90 -17.23 -0.21 1.05 16 10 C 0.11 2.51 3.90 -3.82 -0.01 2.49 16 11 C 0.07 1.62 1.64 -155.66 -0.26 1.37 16 12 C -0.47 -12.50 8.74 -34.44 -0.30 -12.80 16 13 H 0.05 1.39 7.82 -52.49 -0.41 0.98 16 14 C 0.09 2.29 5.32 -17.82 -0.09 2.19 16 15 N -0.87 -22.31 10.12 55.43 0.56 -21.75 16 16 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.21 -4.80 9.96 -26.69 -0.27 -5.06 16 21 C -0.22 -4.79 8.58 -26.69 -0.23 -5.02 16 22 H 0.07 1.42 6.66 -51.93 -0.35 1.07 16 23 H 0.05 0.94 5.86 -51.93 -0.30 0.63 16 24 H 0.00 0.00 8.02 -51.93 -0.42 -0.42 16 25 H 0.08 1.63 7.87 -51.93 -0.41 1.23 16 26 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 27 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 28 H 0.18 2.63 8.06 -52.48 -0.42 2.21 16 29 H -0.02 -0.47 7.92 -51.93 -0.41 -0.88 16 30 H 0.12 2.91 5.62 -51.93 -0.29 2.62 16 31 H 0.25 6.27 8.32 -40.82 -0.34 5.93 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -28.25 288.90 -8.36 -36.62 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.32 Total: 3.75 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.55 Total: -15.62 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.18 Total: -44.76 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.25 -8.36 -36.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602794954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.927 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds