Wall clock time and date at job start Sun Mar 29 2020 22:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99909 * 2 1 4 4 C 1.50704 * 109.47292 * 66.05011 * 3 2 1 5 5 C 1.39872 * 126.03599 * 269.69115 * 4 3 2 6 6 N 1.30837 * 108.19812 * 179.81408 * 5 4 3 7 7 N 1.40082 * 108.20582 * 0.44045 * 6 5 4 8 8 H 0.97003 * 126.03712 * 179.69520 * 7 6 5 9 9 C 1.34940 * 107.92863 * 359.71658 * 7 6 5 10 10 C 1.46902 * 110.99461 * 236.04622 * 2 1 3 11 11 C 1.53002 * 109.47395 * 288.63669 * 10 2 1 12 12 C 1.50699 * 115.54805 * 305.89363 * 11 10 2 13 13 H 1.07997 * 120.00184 * 144.41022 * 12 11 10 14 14 C 1.37879 * 119.99983 * 324.40078 * 12 11 10 15 15 N 1.31519 * 120.00218 * 4.59804 * 14 12 11 16 16 Si 1.86800 * 120.00037 * 184.59986 * 14 12 11 17 17 H 1.48503 * 109.47041 * 59.99951 * 16 14 12 18 18 H 1.48502 * 109.47173 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47223 * 300.00179 * 16 14 12 20 20 C 1.52998 * 117.49675 * 160.21714 * 11 10 2 21 21 C 1.52995 * 117.49678 * 91.55578 * 11 10 2 22 22 H 1.08998 * 109.47299 * 188.86363 * 1 2 3 23 23 H 1.09000 * 109.46986 * 308.86028 * 1 2 3 24 24 H 1.09002 * 109.47491 * 68.86158 * 1 2 3 25 25 H 1.09004 * 109.47061 * 186.04461 * 3 2 1 26 26 H 1.08996 * 109.47488 * 306.04406 * 3 2 1 27 27 H 1.08000 * 125.89726 * 359.97438 * 5 4 3 28 28 H 1.08006 * 126.13317 * 180.02562 * 9 7 6 29 29 H 1.08997 * 109.47187 * 48.64267 * 10 2 1 30 30 H 1.09004 * 109.46559 * 168.64045 * 10 2 1 31 31 H 0.96998 * 120.00297 * 184.99952 * 15 14 12 32 32 H 1.08994 * 117.50032 * 0.02562 * 20 11 10 33 33 H 1.09005 * 117.49178 * 145.02216 * 20 11 10 34 34 H 1.08993 * 117.50014 * 214.97874 * 21 11 10 35 35 H 1.09004 * 117.50130 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 6 0.4791 2.7915 1.5465 6 7 0.5219 3.2136 2.7842 7 7 1.7149 2.7588 3.3606 8 1 2.0102 2.9272 4.2692 9 6 2.3811 2.0457 2.4287 10 6 1.9954 -0.7660 -1.1376 11 6 1.7477 -2.2580 -0.9062 12 6 2.2684 -2.8089 0.3962 13 1 1.7179 -3.5795 0.9152 14 6 3.4478 -2.3292 0.9253 15 7 4.0717 -1.3292 0.3417 16 14 4.1598 -3.0997 2.4709 17 1 4.4357 -4.5380 2.2250 18 1 5.4230 -2.4075 2.8323 19 1 3.1865 -2.9657 3.5843 20 6 1.7854 -3.1782 -2.1280 21 6 0.4494 -2.8522 -1.4558 22 1 -0.3634 -1.0154 0.1583 23 1 -0.3633 0.6448 0.8002 24 1 -0.3634 0.3706 -0.9585 25 1 3.0798 1.3444 -0.1082 26 1 1.5612 1.9273 -0.8309 27 1 -0.3145 2.9825 0.8393 28 1 3.3369 1.5603 2.5612 29 1 1.4916 -0.4515 -2.0516 30 1 3.0662 -0.5859 -1.2326 31 1 4.9368 -1.0390 0.6706 32 1 1.9871 -2.7207 -3.0965 33 1 2.1866 -4.1822 -1.9896 34 1 -0.0279 -3.6418 -0.8756 35 1 -0.2286 -2.1800 -1.9819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602794954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:43 Heat of formation + Delta-G solvation = 99.306272 kcal Electronic energy + Delta-G solvation = -17077.381603 eV Core-core repulsion = 14498.808207 eV Total energy + Delta-G solvation = -2578.573396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.99215 -39.08480 -36.52282 -33.93001 -32.38081 -31.51953 -28.12412 -27.47255 -26.80860 -23.31241 -22.85564 -22.48272 -20.72378 -20.63041 -18.52066 -17.89640 -16.58453 -16.16269 -15.75321 -15.44305 -15.27514 -14.98520 -14.82266 -14.25231 -13.69954 -13.25921 -13.09838 -12.98062 -12.79908 -12.56895 -12.29715 -12.25983 -12.11274 -11.72727 -11.46483 -11.14857 -10.63289 -10.47289 -10.40237 -9.89931 -9.36270 -8.49862 -7.73274 -5.87726 1.06056 1.49733 1.50663 1.57047 1.90113 2.14489 2.57528 3.23276 3.68699 3.88616 3.95451 4.18426 4.43179 4.53704 4.62422 4.69862 4.78136 4.80715 4.83826 4.91509 4.99018 5.06278 5.12890 5.22228 5.27429 5.44980 5.54953 5.62424 5.78139 5.79982 6.19783 6.50701 6.56399 6.79712 6.81378 6.90641 7.12279 7.72216 9.19819 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.010173 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.455994 B = 2751.741117 C = 3645.585148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.508 5.508 3 C 0.145 3.855 4 C -0.232 4.232 5 C 0.052 3.948 6 N -0.326 5.326 7 N -0.474 5.474 8 H 0.449 0.551 9 C 0.078 3.922 10 C 0.121 3.879 11 C 0.040 3.960 12 C -0.493 4.493 13 H 0.031 0.969 14 C 0.058 3.942 15 N -0.873 5.873 16 Si 0.934 3.066 17 H -0.286 1.286 18 H -0.280 1.280 19 H -0.286 1.286 20 C -0.211 4.211 21 C -0.200 4.200 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.014 0.986 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.195 0.805 28 H 0.182 0.818 29 H -0.015 1.015 30 H 0.096 0.904 31 H 0.255 0.745 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 7.614 1.365 8.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.231 5.231 3 C 0.017 3.983 4 C -0.244 4.244 5 C -0.134 4.134 6 N -0.150 5.150 7 N -0.184 5.184 8 H 0.295 0.705 9 C -0.070 4.070 10 C -0.006 4.006 11 C 0.039 3.961 12 C -0.530 4.530 13 H 0.049 0.951 14 C -0.144 4.144 15 N -0.511 5.511 16 Si 0.762 3.238 17 H -0.212 1.212 18 H -0.205 1.205 19 H -0.212 1.212 20 C -0.249 4.249 21 C -0.238 4.238 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.033 0.967 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.212 0.788 28 H 0.199 0.801 29 H 0.002 0.998 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.631 8.224 2.757 9.064 hybrid contribution 0.653 -0.878 -0.172 1.107 sum -1.978 7.346 2.586 8.035 Atomic orbital electron populations 1.22281 0.89190 1.00910 0.98678 1.61510 1.05773 1.11494 1.44286 1.20106 0.99463 0.87349 0.91400 1.20126 0.97802 1.08239 0.98200 1.24033 0.98551 0.96871 0.93935 1.77152 1.03122 1.24351 1.10328 1.46223 1.15754 1.42428 1.13980 0.70548 1.22572 0.99514 0.95570 0.89380 1.21565 1.00880 0.91423 0.86766 1.19109 0.93857 0.91267 0.91819 1.20381 1.07411 1.19823 1.05389 0.95081 1.25155 0.97216 0.94085 0.97917 1.69938 1.14268 1.25114 1.41760 0.86053 0.77652 0.78391 0.81727 1.21228 1.20521 1.21193 1.23008 1.01986 1.01551 0.98381 1.22871 0.91071 1.04105 1.05720 0.93362 0.92026 0.96725 0.91400 0.95332 0.78827 0.80090 0.99761 0.88610 0.93520 0.90542 0.91362 0.91445 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.06 127.69 1.16 2.59 16 2 N -0.51 -21.23 4.07 -927.03 -3.78 -25.01 16 3 C 0.15 5.27 5.44 85.56 0.47 5.73 16 4 C -0.23 -7.65 4.96 -20.14 -0.10 -7.75 16 5 C 0.05 1.58 10.43 85.24 0.89 2.47 16 6 N -0.33 -10.03 12.70 -57.02 -0.72 -10.75 16 7 N -0.47 -12.81 7.36 -57.59 -0.42 -13.24 16 8 H 0.45 8.85 8.96 -213.33 -1.91 6.94 16 9 C 0.08 2.39 11.90 83.54 0.99 3.38 16 10 C 0.12 5.48 3.90 86.30 0.34 5.82 16 11 C 0.04 1.94 1.64 -52.93 -0.09 1.85 16 12 C -0.49 -26.46 8.74 25.60 0.22 -26.23 16 13 H 0.03 1.73 7.82 -2.91 -0.02 1.71 16 14 C 0.06 3.01 5.32 84.65 0.45 3.46 16 15 N -0.87 -44.42 10.12 21.45 0.22 -44.21 16 16 Si 0.93 42.23 29.54 68.60 2.03 44.25 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 C -0.21 -9.35 9.96 30.62 0.30 -9.05 16 21 C -0.20 -8.60 8.58 30.62 0.26 -8.33 16 22 H 0.05 1.98 6.66 -2.39 -0.02 1.96 16 23 H 0.06 2.16 5.86 -2.39 -0.01 2.14 16 24 H 0.01 0.50 8.02 -2.39 -0.02 0.48 16 25 H 0.07 2.64 7.87 -2.39 -0.02 2.62 16 26 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 27 H 0.19 4.80 8.06 -2.91 -0.02 4.78 16 28 H 0.18 5.23 8.06 -2.91 -0.02 5.20 16 29 H -0.02 -0.67 7.92 -2.39 -0.02 -0.68 16 30 H 0.10 4.75 5.62 -2.38 -0.01 4.74 16 31 H 0.25 12.45 8.32 -92.71 -0.77 11.68 16 32 H 0.08 3.12 8.14 -2.39 -0.02 3.11 16 33 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 34 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 Total: -1.00 -57.90 288.90 1.39 -56.51 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.83 Total: 18.48 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 4.90 Total: -26.05 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -4.71 Total: -93.20 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -57.90 1.39 -56.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602794954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.818 kcal (2) G-P(sol) polarization free energy of solvation -57.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds