Wall clock time and date at job start Sun Mar 29 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99972 * 2 1 4 4 C 1.50701 * 109.46952 * 293.95117 * 3 2 1 5 5 C 1.34663 * 126.59448 * 265.16674 * 4 3 2 6 6 N 1.34121 * 108.02372 * 180.28506 * 5 4 3 7 7 C 1.30503 * 109.25308 * 359.73179 * 6 5 4 8 8 N 1.35032 * 108.70011 * 359.97438 * 7 6 5 9 9 H 0.97007 * 126.39636 * 180.02562 * 8 7 6 10 10 C 1.46903 * 110.99532 * 123.95404 * 2 1 3 11 11 C 1.52994 * 109.47591 * 72.05773 * 10 2 1 12 12 C 1.50702 * 115.55159 * 55.29473 * 11 10 2 13 13 H 1.07997 * 120.00208 * 265.09916 * 12 11 10 14 14 C 1.37876 * 120.00094 * 85.09162 * 12 11 10 15 15 N 1.31514 * 119.99663 * 4.37802 * 14 12 11 16 16 Si 1.86799 * 120.00343 * 184.37828 * 14 12 11 17 17 H 1.48506 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47115 * 120.00104 * 16 14 12 19 19 H 1.48494 * 109.47031 * 240.00398 * 16 14 12 20 20 C 1.53004 * 117.49840 * 269.62920 * 11 10 2 21 21 C 1.52999 * 117.50074 * 200.96785 * 11 10 2 22 22 H 1.09002 * 109.47048 * 58.58524 * 1 2 3 23 23 H 1.08997 * 109.46880 * 178.58524 * 1 2 3 24 24 H 1.09002 * 109.47012 * 298.58461 * 1 2 3 25 25 H 1.08996 * 109.46910 * 173.95382 * 3 2 1 26 26 H 1.08999 * 109.47112 * 53.95096 * 3 2 1 27 27 H 1.08002 * 125.99019 * 359.97438 * 5 4 3 28 28 H 1.08007 * 125.64729 * 179.97438 * 7 6 5 29 29 H 1.09001 * 109.46919 * 192.05517 * 10 2 1 30 30 H 1.08996 * 109.47043 * 312.05321 * 10 2 1 31 31 H 0.97003 * 119.99811 * 185.00554 * 15 14 12 32 32 H 1.09001 * 117.49540 * 359.97438 * 20 11 10 33 33 H 1.09000 * 117.49910 * 145.01688 * 20 11 10 34 34 H 1.09000 * 117.49889 * 214.97386 * 21 11 10 35 35 H 1.08998 * 117.49654 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 6 2.4075 2.1299 -2.3998 6 7 1.7277 2.8148 -3.3313 7 6 0.5629 3.1546 -2.8509 8 7 0.4641 2.6914 -1.5864 9 1 -0.2946 2.7989 -0.9916 10 6 1.9954 -0.7660 1.1376 11 6 1.7633 -2.2592 0.8983 12 6 2.3218 -2.8054 -0.3905 13 1 1.6908 -2.8799 -1.2638 14 6 3.6383 -3.2100 -0.4547 15 7 4.3827 -3.2003 0.6295 16 14 4.3645 -3.7719 -2.0814 17 1 3.3277 -3.6890 -3.1413 18 1 5.5098 -2.8976 -2.4405 19 1 4.8334 -5.1753 -1.9556 20 6 0.4545 -2.8621 1.4127 21 6 1.7744 -3.1806 2.1197 22 1 -0.3633 0.5357 -0.8770 23 1 -0.3633 -1.0273 -0.0254 24 1 -0.3633 0.4917 0.9024 25 1 3.0797 1.3444 0.1082 26 1 1.5611 1.9274 0.8309 27 1 3.4010 1.7213 -2.5116 28 1 -0.1964 3.7138 -3.3776 29 1 3.0639 -0.5763 1.2402 30 1 1.4829 -0.4603 2.0497 31 1 5.3269 -3.4149 0.5714 32 1 -0.2409 -2.1949 1.9220 33 1 -0.0023 -3.6540 0.8192 34 1 2.1852 -4.1820 1.9910 35 1 1.9474 -2.7230 3.0937 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602883790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:10 Heat of formation + Delta-G solvation = 93.746938 kcal Electronic energy + Delta-G solvation = -16794.202440 eV Core-core repulsion = 14215.387973 eV Total energy + Delta-G solvation = -2578.814467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.79699 -37.65182 -35.21931 -32.22451 -31.77738 -30.19310 -27.05292 -26.10954 -25.10873 -21.96515 -21.28222 -21.02880 -20.43020 -18.97575 -17.55651 -15.96473 -15.34300 -14.76989 -14.52960 -14.15917 -13.96980 -13.85333 -13.36321 -13.09664 -12.62666 -12.38300 -11.72855 -11.33781 -11.25284 -11.13704 -10.83631 -10.62329 -10.37285 -10.09862 -9.81540 -9.76318 -9.36331 -8.87854 -8.28060 -8.19239 -7.97280 -7.52038 -5.89960 -3.91541 2.25263 3.29934 3.39094 3.42236 3.47492 3.53792 4.53648 4.66617 4.86257 5.14780 5.26820 5.38943 5.44170 5.64239 5.78035 5.81522 5.92217 5.94896 6.18067 6.25215 6.39020 6.45597 6.49917 6.60759 6.74152 6.90612 7.00570 7.15179 7.46741 7.53012 7.56469 7.74091 7.92657 8.03121 8.28185 8.58857 9.07365 9.71797 11.19390 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.008493 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.984929 B = 3296.156752 C = 4116.807905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.509 5.509 3 C 0.127 3.873 4 C 0.001 3.999 5 C -0.011 4.011 6 N -0.497 5.497 7 C 0.171 3.829 8 N -0.569 5.569 9 H 0.414 0.586 10 C 0.104 3.896 11 C 0.052 3.948 12 C -0.459 4.459 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.886 3.114 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.289 1.289 20 C -0.219 4.219 21 C -0.152 4.152 22 H 0.049 0.951 23 H 0.080 0.920 24 H 0.007 0.993 25 H 0.097 0.903 26 H 0.028 0.972 27 H 0.169 0.831 28 H 0.202 0.798 29 H 0.075 0.925 30 H 0.003 0.997 31 H 0.256 0.744 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 10.481 0.277 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.232 5.232 3 C -0.002 4.002 4 C -0.115 4.115 5 C -0.159 4.159 6 N -0.216 5.216 7 C -0.113 4.113 8 N -0.174 5.174 9 H 0.251 0.749 10 C -0.023 4.023 11 C 0.052 3.948 12 C -0.497 4.497 13 H 0.076 0.924 14 C -0.133 4.133 15 N -0.528 5.528 16 Si 0.714 3.286 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.215 1.215 20 C -0.256 4.256 21 C -0.190 4.190 22 H 0.068 0.932 23 H 0.099 0.901 24 H 0.025 0.975 25 H 0.116 0.884 26 H 0.046 0.954 27 H 0.187 0.813 28 H 0.219 0.781 29 H 0.094 0.906 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.775 10.316 -0.902 12.374 hybrid contribution -0.534 -0.024 0.963 1.101 sum -7.308 10.291 0.062 12.623 Atomic orbital electron populations 1.22417 0.88905 1.02915 0.97798 1.61796 1.06404 1.09624 1.45367 1.20530 1.01357 0.88884 0.89435 1.21271 0.87647 1.02648 0.99923 1.22088 1.01383 1.03133 0.89269 1.70252 1.04494 1.15641 1.31228 1.24820 0.98353 1.04317 0.83799 1.43341 1.15632 1.43790 1.14635 0.74896 1.21720 0.99046 0.94568 0.86928 1.18799 0.93109 0.88524 0.94400 1.20281 0.95651 1.39249 0.94561 0.92425 1.24892 0.97394 0.95276 0.95762 1.70016 1.06115 1.49927 1.26705 0.86640 0.79295 0.77905 0.84775 1.19795 1.21059 1.21537 1.23064 0.91657 1.04452 1.06446 1.22510 0.98638 1.02157 0.95685 0.93241 0.90107 0.97450 0.88431 0.95407 0.81342 0.78131 0.90627 0.97937 0.93421 0.92310 0.90640 0.89663 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.11 60.07 0.55 1.02 16 2 N -0.51 -9.69 4.41 -244.37 -1.08 -10.77 16 3 C 0.13 2.02 5.51 -4.97 -0.03 1.99 16 4 C 0.00 0.01 5.94 -81.60 -0.48 -0.48 16 5 C -0.01 -0.18 11.79 -17.82 -0.21 -0.39 16 6 N -0.50 -8.21 11.25 -14.67 -0.17 -8.38 16 7 C 0.17 2.15 13.04 -90.38 -1.18 0.97 16 8 N -0.57 -6.93 5.23 -10.30 -0.05 -6.99 16 9 H 0.41 3.75 8.78 -40.82 -0.36 3.39 16 10 C 0.10 2.21 4.88 -3.83 -0.02 2.20 16 11 C 0.05 1.25 1.24 -155.66 -0.19 1.06 16 12 C -0.46 -12.40 8.54 -34.44 -0.29 -12.70 16 13 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 14 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 15 N -0.89 -24.99 12.65 55.43 0.70 -24.29 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 C -0.22 -4.68 8.35 -26.69 -0.22 -4.90 16 21 C -0.15 -3.53 9.18 -26.69 -0.24 -3.78 16 22 H 0.05 0.75 6.33 -51.93 -0.33 0.42 16 23 H 0.08 1.49 6.09 -51.93 -0.32 1.17 16 24 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 25 H 0.10 1.57 7.86 -51.93 -0.41 1.16 16 26 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 27 H 0.17 2.79 8.06 -52.49 -0.42 2.37 16 28 H 0.20 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.08 1.74 7.81 -51.93 -0.41 1.33 16 30 H 0.00 0.05 8.00 -51.93 -0.42 -0.36 16 31 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 32 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.08 2.16 8.14 -51.93 -0.42 1.73 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -30.69 293.26 -8.78 -39.47 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.15 Total: 3.10 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.42 Total: -13.25 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.60 Total: -50.43 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.69 -8.78 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602883790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.214 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds