Wall clock time and date at job start Sun Mar 29 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99972 * 2 1 4 4 C 1.50701 * 109.46952 * 293.95117 * 3 2 1 5 5 C 1.34663 * 126.59448 * 265.16674 * 4 3 2 6 6 N 1.34121 * 108.02372 * 180.28506 * 5 4 3 7 7 C 1.30503 * 109.25308 * 359.73179 * 6 5 4 8 8 N 1.35032 * 108.70011 * 359.97438 * 7 6 5 9 9 H 0.97007 * 126.39636 * 180.02562 * 8 7 6 10 10 C 1.46903 * 110.99532 * 123.95404 * 2 1 3 11 11 C 1.52994 * 109.47591 * 72.05773 * 10 2 1 12 12 C 1.50702 * 115.55159 * 55.29473 * 11 10 2 13 13 H 1.07997 * 120.00208 * 265.09916 * 12 11 10 14 14 C 1.37876 * 120.00094 * 85.09162 * 12 11 10 15 15 N 1.31514 * 119.99663 * 4.37802 * 14 12 11 16 16 Si 1.86799 * 120.00343 * 184.37828 * 14 12 11 17 17 H 1.48506 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47115 * 120.00104 * 16 14 12 19 19 H 1.48494 * 109.47031 * 240.00398 * 16 14 12 20 20 C 1.53004 * 117.49840 * 269.62920 * 11 10 2 21 21 C 1.52999 * 117.50074 * 200.96785 * 11 10 2 22 22 H 1.09002 * 109.47048 * 58.58524 * 1 2 3 23 23 H 1.08997 * 109.46880 * 178.58524 * 1 2 3 24 24 H 1.09002 * 109.47012 * 298.58461 * 1 2 3 25 25 H 1.08996 * 109.46910 * 173.95382 * 3 2 1 26 26 H 1.08999 * 109.47112 * 53.95096 * 3 2 1 27 27 H 1.08002 * 125.99019 * 359.97438 * 5 4 3 28 28 H 1.08007 * 125.64729 * 179.97438 * 7 6 5 29 29 H 1.09001 * 109.46919 * 192.05517 * 10 2 1 30 30 H 1.08996 * 109.47043 * 312.05321 * 10 2 1 31 31 H 0.97003 * 119.99811 * 185.00554 * 15 14 12 32 32 H 1.09001 * 117.49540 * 359.97438 * 20 11 10 33 33 H 1.09000 * 117.49910 * 145.01688 * 20 11 10 34 34 H 1.09000 * 117.49889 * 214.97386 * 21 11 10 35 35 H 1.08998 * 117.49654 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 6 2.4075 2.1299 -2.3998 6 7 1.7277 2.8148 -3.3313 7 6 0.5629 3.1546 -2.8509 8 7 0.4641 2.6914 -1.5864 9 1 -0.2946 2.7989 -0.9916 10 6 1.9954 -0.7660 1.1376 11 6 1.7633 -2.2592 0.8983 12 6 2.3218 -2.8054 -0.3905 13 1 1.6908 -2.8799 -1.2638 14 6 3.6383 -3.2100 -0.4547 15 7 4.3827 -3.2003 0.6295 16 14 4.3645 -3.7719 -2.0814 17 1 3.3277 -3.6890 -3.1413 18 1 5.5098 -2.8976 -2.4405 19 1 4.8334 -5.1753 -1.9556 20 6 0.4545 -2.8621 1.4127 21 6 1.7744 -3.1806 2.1197 22 1 -0.3633 0.5357 -0.8770 23 1 -0.3633 -1.0273 -0.0254 24 1 -0.3633 0.4917 0.9024 25 1 3.0797 1.3444 0.1082 26 1 1.5611 1.9274 0.8309 27 1 3.4010 1.7213 -2.5116 28 1 -0.1964 3.7138 -3.3776 29 1 3.0639 -0.5763 1.2402 30 1 1.4829 -0.4603 2.0497 31 1 5.3269 -3.4149 0.5714 32 1 -0.2409 -2.1949 1.9220 33 1 -0.0023 -3.6540 0.8192 34 1 2.1852 -4.1820 1.9910 35 1 1.9474 -2.7230 3.0937 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602883790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:10 Heat of formation + Delta-G solvation = 74.733384 kcal Electronic energy + Delta-G solvation = -16795.026929 eV Core-core repulsion = 14215.387973 eV Total energy + Delta-G solvation = -2579.638956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.89927 -39.27046 -36.81309 -33.86085 -33.33219 -31.41833 -28.56676 -27.58374 -26.95611 -23.36411 -22.84582 -22.34860 -21.58359 -20.84497 -18.66296 -17.87374 -16.68786 -16.51759 -16.10425 -15.76938 -15.21968 -15.15444 -14.87020 -14.35903 -14.24695 -13.61776 -13.46906 -13.08325 -12.81005 -12.77537 -12.58502 -12.45652 -12.27350 -11.93621 -11.24607 -10.92956 -10.87026 -10.84071 -10.26348 -9.87231 -9.33021 -8.90749 -8.00110 -6.04909 1.14354 1.40910 1.45488 1.54940 2.25054 2.33338 2.50457 3.24068 3.30393 3.65488 3.84292 4.04896 4.16094 4.35971 4.45973 4.50138 4.61359 4.65660 4.71088 4.74431 4.80792 4.85023 5.00044 5.03755 5.21563 5.33707 5.34983 5.70524 5.73190 5.81507 5.90414 6.32864 6.39272 6.60435 6.64455 6.97247 7.18880 7.59764 9.08461 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.008493 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.984929 B = 3296.156752 C = 4116.807905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.535 5.535 3 C 0.133 3.867 4 C -0.003 4.003 5 C -0.041 4.041 6 N -0.540 5.540 7 C 0.192 3.808 8 N -0.556 5.556 9 H 0.432 0.568 10 C 0.119 3.881 11 C 0.028 3.972 12 C -0.465 4.465 13 H 0.040 0.960 14 C 0.027 3.973 15 N -0.912 5.912 16 Si 0.934 3.066 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.286 1.286 20 C -0.190 4.190 21 C -0.160 4.160 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.155 0.845 28 H 0.249 0.751 29 H 0.048 0.952 30 H 0.022 0.978 31 H 0.255 0.745 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 11.967 0.383 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.258 5.258 3 C 0.004 3.996 4 C -0.120 4.120 5 C -0.189 4.189 6 N -0.260 5.260 7 C -0.092 4.092 8 N -0.161 5.161 9 H 0.273 0.727 10 C -0.008 4.008 11 C 0.027 3.973 12 C -0.504 4.504 13 H 0.058 0.942 14 C -0.172 4.172 15 N -0.552 5.552 16 Si 0.762 3.238 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.227 4.227 21 C -0.198 4.198 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.172 0.828 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.817 11.804 -0.782 14.754 hybrid contribution 0.019 -0.453 0.886 0.995 sum -8.798 11.351 0.103 14.362 Atomic orbital electron populations 1.22366 0.87298 1.02232 0.99634 1.61649 1.08050 1.11386 1.44765 1.20430 1.00815 0.87666 0.90660 1.21031 0.88669 1.03125 0.99132 1.22106 1.01723 1.04492 0.90534 1.70218 1.06384 1.17237 1.32137 1.25712 0.97748 1.02206 0.83520 1.43246 1.15200 1.42784 1.14888 0.72743 1.21377 0.97783 0.93126 0.88552 1.18910 0.95023 0.90148 0.93203 1.20449 0.95594 1.38904 0.95414 0.94208 1.25422 0.97933 0.95836 0.97980 1.70091 1.06133 1.51104 1.27836 0.85877 0.78442 0.77525 0.81945 1.20123 1.20960 1.21235 1.23016 0.90965 1.03854 1.04882 1.22408 1.00348 1.00739 0.96343 0.91933 0.92039 0.94904 0.89677 0.92802 0.82773 0.73520 0.93358 0.96045 0.93565 0.89226 0.91206 0.92558 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 9.11 127.69 1.16 2.16 16 2 N -0.53 -19.61 4.41 -927.04 -4.09 -23.70 16 3 C 0.13 4.03 5.51 85.56 0.47 4.50 16 4 C 0.00 -0.09 5.94 40.95 0.24 0.15 16 5 C -0.04 -1.39 11.79 83.52 0.98 -0.41 16 6 N -0.54 -17.17 11.25 -200.32 -2.25 -19.43 16 7 C 0.19 4.23 13.04 180.27 2.35 6.58 16 8 N -0.56 -11.70 5.23 -186.50 -0.98 -12.67 16 9 H 0.43 5.95 8.78 -92.70 -0.81 5.14 16 10 C 0.12 4.94 4.88 86.30 0.42 5.36 16 11 C 0.03 1.32 1.24 -52.93 -0.07 1.25 16 12 C -0.47 -25.39 8.54 25.60 0.22 -25.18 16 13 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 14 C 0.03 1.49 5.43 84.65 0.46 1.95 16 15 N -0.91 -52.14 12.65 21.45 0.27 -51.87 16 16 Si 0.93 45.32 29.54 68.60 2.03 47.35 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 18 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 C -0.19 -7.81 8.35 30.62 0.26 -7.55 16 21 C -0.16 -7.39 9.18 30.62 0.28 -7.11 16 22 H 0.06 1.71 6.33 -2.39 -0.02 1.69 16 23 H 0.06 2.11 6.09 -2.39 -0.01 2.09 16 24 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 2.75 7.86 -2.39 -0.02 2.73 16 26 H 0.05 1.35 8.12 -2.39 -0.02 1.33 16 27 H 0.15 5.40 8.06 -2.91 -0.02 5.37 16 28 H 0.25 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.05 2.23 7.81 -2.39 -0.02 2.22 16 30 H 0.02 0.80 8.00 -2.39 -0.02 0.78 16 31 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 32 H 0.09 3.13 8.04 -2.39 -0.02 3.11 16 33 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -66.74 293.26 2.03 -64.71 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.26 Total: 13.90 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 6.78 Total: -18.29 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -7.05 Total: -107.67 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -66.74 2.03 -64.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602883790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.443 kcal (2) G-P(sol) polarization free energy of solvation -66.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds