Wall clock time and date at job start Sun Mar 29 2020 22:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99829 * 2 1 4 4 C 1.53002 * 109.47206 * 125.00553 * 3 2 1 5 5 C 1.52995 * 109.47181 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47181 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.35309 * 125.87027 * 124.97307 * 7 6 5 9 9 C 1.35353 * 106.17498 * 179.97438 * 8 7 6 10 10 C 1.50706 * 126.75076 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46793 * 124.99895 * 10 9 8 12 12 H 1.08001 * 119.99975 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99507 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00130 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99689 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47195 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47416 * 209.99962 * 15 13 11 18 18 H 1.48503 * 109.47059 * 330.00183 * 15 13 11 19 19 N 1.33775 * 106.49785 * 359.97438 * 9 8 7 20 20 N 1.28637 * 108.88137 * 0.02562 * 19 9 8 21 21 H 1.08001 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.08004 * 119.99932 * 180.02562 * 1 2 3 23 23 H 1.08001 * 120.00207 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47154 * 5.00321 * 3 2 1 25 25 H 1.09007 * 109.46996 * 245.00291 * 3 2 1 26 26 H 1.08997 * 109.46834 * 59.99655 * 4 3 2 27 27 H 1.09004 * 109.46658 * 300.00228 * 4 3 2 28 28 H 1.09001 * 109.46985 * 59.99547 * 5 4 3 29 29 H 1.09007 * 109.47030 * 299.99742 * 5 4 3 30 30 H 1.08997 * 109.46834 * 59.99681 * 6 5 4 31 31 H 1.09007 * 109.46928 * 299.99805 * 6 5 4 32 32 H 1.08002 * 126.91313 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.46870 * 244.99788 * 10 9 8 34 34 H 1.09004 * 109.46999 * 5.00398 * 10 9 8 35 35 H 0.97003 * 119.99723 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 6 4.7726 2.6855 2.3624 7 7 5.5051 3.9543 2.3624 8 6 5.5768 4.8284 3.3927 9 6 6.3495 5.8537 2.9643 10 6 6.7305 7.0840 3.7469 11 6 8.2311 7.2208 3.7685 12 1 8.8472 6.4902 3.2654 13 6 8.8174 8.2786 4.4305 14 7 8.0671 9.1679 5.0435 15 14 10.6774 8.4487 4.4567 16 1 11.1171 9.2570 3.2911 17 1 11.0954 9.1225 5.7122 18 1 11.2986 7.1016 4.3874 19 7 6.7084 5.5603 1.7094 20 7 6.1917 4.4286 1.3825 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6212 1.4027 -0.9315 26 1 3.7400 0.5066 1.0919 27 1 2.4773 1.2355 2.1130 28 1 3.0958 3.4846 1.2705 29 1 4.3583 2.7549 0.2497 30 1 5.4772 1.8588 2.2725 31 1 4.2152 2.5883 3.2941 32 1 5.1117 4.7277 4.3623 33 1 6.2921 7.9641 3.2765 34 1 6.3591 6.9946 4.7679 35 1 8.4796 9.9123 5.5090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603195999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:29 Heat of formation + Delta-G solvation = 91.569885 kcal Electronic energy + Delta-G solvation = -15385.358406 eV Core-core repulsion = 12806.449535 eV Total energy + Delta-G solvation = -2578.908871 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.46430 -37.05400 -34.95980 -33.34743 -32.15727 -30.99745 -28.67610 -27.28314 -24.66315 -23.37237 -21.71641 -21.11985 -20.24124 -19.73332 -16.80019 -16.40592 -16.04642 -15.50020 -15.17417 -14.49506 -14.13885 -13.92645 -13.50638 -13.10438 -12.57995 -12.39975 -12.11186 -11.88882 -11.57821 -11.48020 -11.18276 -10.97595 -10.88835 -10.71046 -10.60710 -10.04874 -9.70566 -9.65409 -9.39035 -9.24176 -8.41480 -8.09477 -5.97012 -3.97356 1.93196 2.27442 2.85008 3.38512 3.43203 3.46720 3.55105 4.34425 4.47923 4.53346 4.61317 4.75348 4.89889 5.01912 5.13483 5.20580 5.29255 5.39057 5.40943 5.45725 5.57402 5.73266 5.82280 5.92183 6.02542 6.12195 6.28384 6.37645 6.42681 7.16625 7.23787 7.55566 7.65157 8.00963 8.39952 9.06160 9.35135 9.65321 11.14166 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.081966 B = 0.003484 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.522318 B = 8035.100897 C = 8162.508565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.121 3.879 7 N -0.304 5.304 8 C -0.084 4.084 9 C 0.033 3.967 10 C 0.092 3.908 11 C -0.502 4.502 12 H 0.059 0.941 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.275 1.275 19 N -0.263 5.263 20 N -0.109 5.109 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.181 0.819 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.718 -17.457 -5.189 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.149 4.149 5 C -0.171 4.171 6 C 0.000 4.000 7 N -0.100 5.100 8 C -0.232 4.232 9 C -0.104 4.104 10 C 0.053 3.947 11 C -0.541 4.541 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.200 1.200 19 N -0.130 5.130 20 N -0.088 5.088 21 H 0.114 0.886 22 H 0.114 0.886 23 H 0.126 0.874 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.198 0.802 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.233 -17.545 -6.524 22.923 hybrid contribution 0.523 0.107 1.264 1.372 sum -12.709 -17.438 -5.260 22.210 Atomic orbital electron populations 1.23873 0.96032 1.01835 1.01709 1.22989 0.96041 0.98568 0.99433 1.20770 0.98219 0.95374 0.98950 1.21455 0.97854 0.96868 0.98721 1.21897 0.97972 0.98532 0.98729 1.21927 0.94569 0.82407 1.01145 1.47200 1.35058 1.17158 1.10584 1.23379 1.09785 0.93764 0.96321 1.23026 0.96013 0.99342 0.91999 1.17725 0.97148 0.86801 0.92997 1.21052 0.90798 1.09667 1.32589 0.92306 1.24976 0.98345 0.95685 0.95463 1.69947 1.35064 1.13695 1.35157 0.86508 0.85501 0.78206 0.77305 1.20546 1.21303 1.19955 1.75072 1.18512 1.05358 1.14086 1.78147 1.09083 1.07946 1.13625 0.88592 0.88618 0.87407 0.91354 0.90672 0.91319 0.91490 0.91054 0.89951 0.89081 0.88320 0.80222 0.94341 0.94575 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 14.32 29.01 0.42 -0.89 16 2 C -0.15 -1.04 9.52 -36.03 -0.34 -1.39 16 3 C -0.10 -0.68 5.66 -27.88 -0.16 -0.84 16 4 C -0.11 -0.77 5.20 -26.73 -0.14 -0.91 16 5 C -0.13 -1.26 5.34 -26.73 -0.14 -1.40 16 6 C 0.12 1.29 6.46 -4.04 -0.03 1.27 16 7 N -0.30 -5.12 3.44 -61.26 -0.21 -5.33 16 8 C -0.08 -1.55 11.49 -17.05 -0.20 -1.75 16 9 C 0.03 0.79 6.44 -82.77 -0.53 0.25 16 10 C 0.09 2.44 5.55 -29.03 -0.16 2.28 16 11 C -0.50 -14.70 9.09 -34.44 -0.31 -15.02 16 12 H 0.06 1.76 7.74 -52.49 -0.41 1.36 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 15 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 19 N -0.26 -6.41 12.40 33.29 0.41 -6.00 16 20 N -0.11 -2.26 12.92 60.35 0.78 -1.48 16 21 H 0.10 0.61 7.84 -52.49 -0.41 0.20 16 22 H 0.10 0.54 8.06 -52.48 -0.42 0.11 16 23 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 24 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.18 2.64 8.06 -52.49 -0.42 2.21 16 33 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.04 0.95 8.12 -51.93 -0.42 0.52 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -33.42 306.43 -5.80 -39.22 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -5.42 Total: -5.31 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -1.69 Total: -16.87 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 1.72 Total: -38.98 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.42 -5.80 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603195999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.789 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds