Wall clock time and date at job start Sun Mar 29 2020 22:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99829 * 2 1 4 4 C 1.53002 * 109.47206 * 125.00553 * 3 2 1 5 5 C 1.52995 * 109.47181 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47181 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.35309 * 125.87027 * 124.97307 * 7 6 5 9 9 C 1.35353 * 106.17498 * 179.97438 * 8 7 6 10 10 C 1.50706 * 126.75076 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46793 * 124.99895 * 10 9 8 12 12 H 1.08001 * 119.99975 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99507 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00130 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99689 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47195 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47416 * 209.99962 * 15 13 11 18 18 H 1.48503 * 109.47059 * 330.00183 * 15 13 11 19 19 N 1.33775 * 106.49785 * 359.97438 * 9 8 7 20 20 N 1.28637 * 108.88137 * 0.02562 * 19 9 8 21 21 H 1.08001 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.08004 * 119.99932 * 180.02562 * 1 2 3 23 23 H 1.08001 * 120.00207 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47154 * 5.00321 * 3 2 1 25 25 H 1.09007 * 109.46996 * 245.00291 * 3 2 1 26 26 H 1.08997 * 109.46834 * 59.99655 * 4 3 2 27 27 H 1.09004 * 109.46658 * 300.00228 * 4 3 2 28 28 H 1.09001 * 109.46985 * 59.99547 * 5 4 3 29 29 H 1.09007 * 109.47030 * 299.99742 * 5 4 3 30 30 H 1.08997 * 109.46834 * 59.99681 * 6 5 4 31 31 H 1.09007 * 109.46928 * 299.99805 * 6 5 4 32 32 H 1.08002 * 126.91313 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.46870 * 244.99788 * 10 9 8 34 34 H 1.09004 * 109.46999 * 5.00398 * 10 9 8 35 35 H 0.97003 * 119.99723 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 6 4.7726 2.6855 2.3624 7 7 5.5051 3.9543 2.3624 8 6 5.5768 4.8284 3.3927 9 6 6.3495 5.8537 2.9643 10 6 6.7305 7.0840 3.7469 11 6 8.2311 7.2208 3.7685 12 1 8.8472 6.4902 3.2654 13 6 8.8174 8.2786 4.4305 14 7 8.0671 9.1679 5.0435 15 14 10.6774 8.4487 4.4567 16 1 11.1171 9.2570 3.2911 17 1 11.0954 9.1225 5.7122 18 1 11.2986 7.1016 4.3874 19 7 6.7084 5.5603 1.7094 20 7 6.1917 4.4286 1.3825 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6212 1.4027 -0.9315 26 1 3.7400 0.5066 1.0919 27 1 2.4773 1.2355 2.1130 28 1 3.0958 3.4846 1.2705 29 1 4.3583 2.7549 0.2497 30 1 5.4772 1.8588 2.2725 31 1 4.2152 2.5883 3.2941 32 1 5.1117 4.7277 4.3623 33 1 6.2921 7.9641 3.2765 34 1 6.3591 6.9946 4.7679 35 1 8.4796 9.9123 5.5090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603195999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:28 Heat of formation + Delta-G solvation = 70.896950 kcal Electronic energy + Delta-G solvation = -15386.254852 eV Core-core repulsion = 12806.449535 eV Total energy + Delta-G solvation = -2579.805317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.01459 -37.78937 -36.08692 -35.22915 -33.27154 -32.77849 -29.77005 -28.99743 -25.65231 -25.36743 -22.65376 -22.45275 -21.41478 -20.54151 -18.52842 -17.95220 -17.28982 -16.59520 -16.48126 -15.82080 -15.54841 -14.75209 -14.66081 -14.28470 -14.05552 -13.78630 -13.55062 -13.10777 -12.83739 -12.66807 -12.52056 -12.46713 -12.13095 -11.87885 -11.70551 -11.66664 -11.52658 -11.34510 -10.79725 -10.58333 -10.18227 -9.84181 -8.18672 -6.27328 0.79098 1.40263 1.42086 1.42650 1.52995 1.65424 1.78365 2.44727 3.14003 3.54762 3.68325 3.83704 3.98819 4.15557 4.21400 4.33076 4.40829 4.49246 4.56831 4.59076 4.69610 4.84946 4.90337 5.06694 5.09547 5.26004 5.32423 5.39258 5.46678 5.55337 5.77051 5.78785 5.88839 5.92908 6.23062 6.80945 7.39249 7.73896 8.92321 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.081966 B = 0.003484 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.522318 B = 8035.100897 C = 8162.508565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.098 4.098 4 C -0.101 4.101 5 C -0.126 4.126 6 C 0.107 3.893 7 N -0.285 5.285 8 C -0.054 4.054 9 C -0.011 4.011 10 C 0.102 3.898 11 C -0.524 4.524 12 H 0.044 0.956 13 C 0.007 3.993 14 N -0.927 5.927 15 Si 0.963 3.037 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.271 1.271 19 N -0.313 5.313 20 N -0.120 5.120 21 H 0.095 0.905 22 H 0.105 0.895 23 H 0.117 0.883 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.225 0.775 33 H 0.007 0.993 34 H 0.034 0.966 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 -19.525 -4.369 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.177 4.177 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.164 4.164 6 C -0.012 4.012 7 N -0.080 5.080 8 C -0.204 4.204 9 C -0.149 4.149 10 C 0.063 3.937 11 C -0.562 4.562 12 H 0.062 0.938 13 C -0.191 4.191 14 N -0.567 5.567 15 Si 0.787 3.213 16 H -0.202 1.202 17 H -0.198 1.198 18 H -0.196 1.196 19 N -0.179 5.179 20 N -0.099 5.099 21 H 0.113 0.887 22 H 0.124 0.876 23 H 0.135 0.865 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.156 0.844 32 H 0.241 0.759 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.695 -19.646 -5.729 24.624 hybrid contribution 0.538 0.648 0.984 1.295 sum -13.157 -18.998 -4.745 23.591 Atomic orbital electron populations 1.24021 0.96172 1.02343 1.01336 1.23060 0.96178 0.98664 0.99756 1.20768 0.98226 0.95570 0.98935 1.21388 0.97761 0.95500 0.99205 1.21829 0.97459 0.99795 0.97357 1.22589 0.95085 0.79937 1.03557 1.47674 1.33259 1.18079 1.09008 1.23790 1.07097 0.91899 0.97609 1.22686 0.99364 1.00319 0.92520 1.17384 0.95676 0.87543 0.93051 1.21281 0.92313 1.09796 1.32809 0.93814 1.25804 1.03204 0.95179 0.94886 1.70039 1.37039 1.14119 1.35541 0.85486 0.79663 0.78288 0.77814 1.20167 1.19810 1.19597 1.74979 1.20564 1.07284 1.15089 1.78020 1.09909 1.07196 1.14741 0.88700 0.87636 0.86472 0.91860 0.91201 0.90141 0.90105 0.91994 0.91864 0.87106 0.84433 0.75885 0.97520 0.94734 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.32 14.32 67.78 0.97 -1.35 16 2 C -0.16 -1.85 9.52 25.65 0.24 -1.61 16 3 C -0.10 -1.23 5.66 29.85 0.17 -1.06 16 4 C -0.10 -1.10 5.20 30.59 0.16 -0.94 16 5 C -0.13 -2.10 5.34 30.59 0.16 -1.93 16 6 C 0.11 1.90 6.46 86.38 0.56 2.46 16 7 N -0.28 -8.96 3.44 -347.73 -1.20 -10.16 16 8 C -0.05 -1.88 11.49 83.49 0.96 -0.92 16 9 C -0.01 -0.50 6.44 41.60 0.27 -0.23 16 10 C 0.10 5.61 5.55 29.10 0.16 5.77 16 11 C -0.52 -31.40 9.09 25.60 0.23 -31.17 16 12 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 13 C 0.01 0.43 5.46 84.66 0.46 0.90 16 14 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 15 Si 0.96 46.05 29.54 68.60 2.03 48.07 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 19 N -0.31 -15.56 12.40 -48.59 -0.60 -16.16 16 20 N -0.12 -4.92 12.92 37.02 0.48 -4.44 16 21 H 0.09 1.08 7.84 -2.91 -0.02 1.06 16 22 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 23 H 0.12 1.13 8.06 -2.91 -0.02 1.11 16 24 H 0.06 0.85 7.79 -2.39 -0.02 0.83 16 25 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.31 8.12 -2.38 -0.02 1.29 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.14 1.46 8.07 -2.38 -0.02 1.44 16 32 H 0.22 5.64 8.06 -2.91 -0.02 5.62 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.03 1.85 8.12 -2.39 -0.02 1.83 16 35 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -74.37 306.43 6.38 -67.99 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.04 Total: 0.62 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 4.35 Total: -30.10 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -1.04 Total: -86.59 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -74.37 6.38 -67.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603195999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.891 kcal (2) G-P(sol) polarization free energy of solvation -74.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds