Wall clock time and date at job start Sun Mar 29 2020 22:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46811 * 2 1 4 4 C 1.30997 * 120.00267 * 126.33638 * 3 2 1 5 5 C 1.50707 * 119.99824 * 7.53331 * 4 3 2 6 6 C 1.53000 * 109.47233 * 127.62370 * 5 4 3 7 7 N 1.46493 * 109.47071 * 180.02562 * 6 5 4 8 8 C 1.35315 * 125.86989 * 124.71523 * 7 6 5 9 9 C 1.35346 * 106.17693 * 179.90315 * 8 7 6 10 10 C 1.50703 * 126.75465 * 180.12465 * 9 8 7 11 11 C 1.50696 * 109.47354 * 125.24257 * 10 9 8 12 12 H 1.07998 * 119.99794 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00013 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00091 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99771 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47346 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47034 * 120.00025 * 15 13 11 18 18 H 1.48498 * 109.47093 * 239.99853 * 15 13 11 19 19 N 1.33776 * 106.49717 * 0.34855 * 9 8 7 20 20 N 1.28631 * 108.88460 * 359.77582 * 19 9 8 21 21 H 1.08999 * 109.47083 * 60.00318 * 1 2 3 22 22 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47511 * 300.00240 * 1 2 3 24 24 H 1.08999 * 109.47216 * 239.99303 * 2 1 3 25 25 H 1.09005 * 109.46872 * 119.99288 * 2 1 3 26 26 H 1.08002 * 119.99918 * 306.32290 * 3 2 1 27 27 H 1.08001 * 120.00345 * 187.53880 * 4 3 2 28 28 H 1.09000 * 109.47101 * 7.61757 * 5 4 3 29 29 H 1.09007 * 109.46901 * 247.61937 * 5 4 3 30 30 H 1.09006 * 109.46392 * 299.99927 * 6 5 4 31 31 H 1.08993 * 109.46956 * 59.99647 * 6 5 4 32 32 H 1.07998 * 126.90997 * 0.02562 * 8 7 6 33 33 H 1.09000 * 109.46988 * 245.24583 * 10 9 8 34 34 H 1.09007 * 109.46566 * 5.24214 * 10 9 8 35 35 H 0.96994 * 120.00260 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8843 1.8144 0.9138 5 6 3.4924 0.8106 1.8593 6 6 5.0161 0.9480 1.8382 7 7 5.6071 -0.0282 2.7568 8 6 6.5426 -0.9522 2.4374 9 6 6.8023 -1.6353 3.5766 10 6 7.7792 -2.7705 3.7446 11 6 8.7410 -2.4450 4.8581 12 1 8.6533 -1.5098 5.3911 13 6 9.7328 -3.3411 5.1964 14 7 9.8392 -4.4801 4.5476 15 14 10.9245 -2.9378 6.5772 16 1 10.5935 -1.6055 7.1435 17 1 10.8172 -3.9687 7.6405 18 1 12.3107 -2.9182 6.0447 19 7 6.0176 -1.1080 4.5230 20 7 5.3219 -0.1580 4.0053 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6899 2.1146 -0.7536 27 1 3.1510 2.8582 0.9898 28 1 3.2140 -0.1964 1.5484 29 1 3.1251 0.9937 2.8691 30 1 5.3834 0.7649 0.8284 31 1 5.2944 1.9549 2.1491 32 1 6.9930 -1.1112 1.4687 33 1 7.2365 -3.6838 3.9886 34 1 8.3328 -2.9137 2.8165 35 1 10.5371 -5.1103 4.7853 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603224996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:32 Heat of formation + Delta-G solvation = 97.608950 kcal Electronic energy + Delta-G solvation = -15579.479141 eV Core-core repulsion = 13000.832143 eV Total energy + Delta-G solvation = -2578.646997 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.46970 -37.39466 -34.72525 -33.23721 -31.72981 -30.99626 -28.94392 -27.29502 -24.51163 -23.51542 -23.29482 -21.11958 -19.99181 -18.66674 -16.80246 -16.23542 -16.06243 -15.72589 -14.55728 -14.53262 -14.33925 -13.94499 -13.63604 -12.91749 -12.59390 -12.39846 -12.19808 -12.09671 -11.65659 -11.61552 -11.27599 -10.97160 -10.72385 -10.64495 -10.61619 -10.03764 -9.68072 -9.44763 -9.28618 -9.17779 -8.41698 -8.09753 -5.97119 -3.97388 1.84349 2.29187 2.87663 3.36851 3.43344 3.48198 3.55708 4.43303 4.52973 4.56754 4.72460 4.76151 4.90895 5.05489 5.11251 5.23639 5.29095 5.34144 5.40170 5.55948 5.67023 5.78687 5.83970 5.90631 5.92362 6.11681 6.33807 6.37895 6.54601 7.16430 7.23343 7.55588 7.65034 8.01102 8.39966 9.06511 9.34839 9.65396 11.14112 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.056061 B = 0.003965 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.335338 B = 7060.984994 C = 7263.012036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.151 4.151 4 C -0.159 4.159 5 C -0.113 4.113 6 C 0.128 3.872 7 N -0.305 5.305 8 C -0.083 4.083 9 C 0.033 3.967 10 C 0.092 3.908 11 C -0.502 4.502 12 H 0.059 0.941 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.285 1.285 19 N -0.262 5.262 20 N -0.109 5.109 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.181 0.819 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 11.097 -12.191 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.169 4.169 4 C -0.177 4.177 5 C -0.151 4.151 6 C 0.006 3.994 7 N -0.100 5.100 8 C -0.232 4.232 9 C -0.104 4.104 10 C 0.053 3.947 11 C -0.541 4.541 12 H 0.078 0.922 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.211 1.211 19 N -0.129 5.129 20 N -0.088 5.088 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.198 0.802 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.021 11.480 -11.033 21.890 hybrid contribution 1.344 -0.004 -0.382 1.397 sum -13.677 11.477 -11.414 21.191 Atomic orbital electron populations 1.21685 0.95004 1.01791 1.01849 1.20872 0.96274 0.94703 1.03035 1.22854 0.98238 0.97604 0.98186 1.22628 0.99101 0.99108 0.96878 1.21122 0.92960 0.99942 1.01080 1.21814 0.93828 0.91551 0.92201 1.47201 1.28617 1.25277 1.08942 1.23378 0.99984 0.96962 1.02843 1.23025 0.98684 1.00714 0.87959 1.17730 0.90136 0.88582 0.98257 1.21095 1.12342 1.03950 1.16676 0.92233 1.24977 0.97755 0.94974 0.96766 1.69953 1.33780 1.08759 1.41358 0.86459 0.80548 0.78535 0.82067 1.19699 1.20942 1.21118 1.75073 1.06875 1.04705 1.26297 1.78153 1.22058 1.17380 0.91228 0.92764 0.92472 0.92616 0.91134 0.90429 0.87093 0.86774 0.89723 0.89317 0.88216 0.89006 0.80215 0.94325 0.94571 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.67 16 2 C -0.11 -0.88 6.04 -27.88 -0.17 -1.05 16 3 C -0.15 -1.15 9.51 -36.03 -0.34 -1.49 16 4 C -0.16 -1.27 9.51 -36.02 -0.34 -1.61 16 5 C -0.11 -1.14 5.43 -27.88 -0.15 -1.30 16 6 C 0.13 1.41 6.44 -4.05 -0.03 1.38 16 7 N -0.30 -5.13 3.44 -61.27 -0.21 -5.34 16 8 C -0.08 -1.54 11.49 -17.05 -0.20 -1.73 16 9 C 0.03 0.78 6.44 -82.77 -0.53 0.25 16 10 C 0.09 2.43 5.55 -29.04 -0.16 2.27 16 11 C -0.50 -14.68 9.09 -34.44 -0.31 -14.99 16 12 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 15 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 N -0.26 -6.38 12.40 33.29 0.41 -5.96 16 20 N -0.11 -2.26 12.91 60.35 0.78 -1.48 16 21 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.70 5.28 -51.93 -0.27 0.42 16 26 H 0.11 0.71 8.06 -52.49 -0.42 0.28 16 27 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 28 H 0.08 0.91 5.30 -51.93 -0.28 0.63 16 29 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 30 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 33 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.04 0.95 8.12 -51.93 -0.42 0.52 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -33.17 301.71 -5.88 -39.05 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -5.16 Total: -4.55 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -1.96 Total: -17.41 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 1.72 Total: -38.92 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.17 -5.88 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.660 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds