Wall clock time and date at job start Sun Mar 29 2020 22:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46811 * 2 1 4 4 C 1.30997 * 120.00267 * 126.33638 * 3 2 1 5 5 C 1.50707 * 119.99824 * 7.53331 * 4 3 2 6 6 C 1.53000 * 109.47233 * 127.62370 * 5 4 3 7 7 N 1.46493 * 109.47071 * 180.02562 * 6 5 4 8 8 C 1.35315 * 125.86989 * 124.71523 * 7 6 5 9 9 C 1.35346 * 106.17693 * 179.90315 * 8 7 6 10 10 C 1.50703 * 126.75465 * 180.12465 * 9 8 7 11 11 C 1.50696 * 109.47354 * 125.24257 * 10 9 8 12 12 H 1.07998 * 119.99794 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00013 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00091 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99771 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47346 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47034 * 120.00025 * 15 13 11 18 18 H 1.48498 * 109.47093 * 239.99853 * 15 13 11 19 19 N 1.33776 * 106.49717 * 0.34855 * 9 8 7 20 20 N 1.28631 * 108.88460 * 359.77582 * 19 9 8 21 21 H 1.08999 * 109.47083 * 60.00318 * 1 2 3 22 22 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47511 * 300.00240 * 1 2 3 24 24 H 1.08999 * 109.47216 * 239.99303 * 2 1 3 25 25 H 1.09005 * 109.46872 * 119.99288 * 2 1 3 26 26 H 1.08002 * 119.99918 * 306.32290 * 3 2 1 27 27 H 1.08001 * 120.00345 * 187.53880 * 4 3 2 28 28 H 1.09000 * 109.47101 * 7.61757 * 5 4 3 29 29 H 1.09007 * 109.46901 * 247.61937 * 5 4 3 30 30 H 1.09006 * 109.46392 * 299.99927 * 6 5 4 31 31 H 1.08993 * 109.46956 * 59.99647 * 6 5 4 32 32 H 1.07998 * 126.90997 * 0.02562 * 8 7 6 33 33 H 1.09000 * 109.46988 * 245.24583 * 10 9 8 34 34 H 1.09007 * 109.46566 * 5.24214 * 10 9 8 35 35 H 0.96994 * 120.00260 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8843 1.8144 0.9138 5 6 3.4924 0.8106 1.8593 6 6 5.0161 0.9480 1.8382 7 7 5.6071 -0.0282 2.7568 8 6 6.5426 -0.9522 2.4374 9 6 6.8023 -1.6353 3.5766 10 6 7.7792 -2.7705 3.7446 11 6 8.7410 -2.4450 4.8581 12 1 8.6533 -1.5098 5.3911 13 6 9.7328 -3.3411 5.1964 14 7 9.8392 -4.4801 4.5476 15 14 10.9245 -2.9378 6.5772 16 1 10.5935 -1.6055 7.1435 17 1 10.8172 -3.9687 7.6405 18 1 12.3107 -2.9182 6.0447 19 7 6.0176 -1.1080 4.5230 20 7 5.3219 -0.1580 4.0053 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6899 2.1146 -0.7536 27 1 3.1510 2.8582 0.9898 28 1 3.2140 -0.1964 1.5484 29 1 3.1251 0.9937 2.8691 30 1 5.3834 0.7649 0.8284 31 1 5.2944 1.9549 2.1491 32 1 6.9930 -1.1112 1.4687 33 1 7.2365 -3.6838 3.9886 34 1 8.3328 -2.9137 2.8165 35 1 10.5371 -5.1103 4.7853 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603224996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:31 Heat of formation + Delta-G solvation = 77.121809 kcal Electronic energy + Delta-G solvation = -15580.367530 eV Core-core repulsion = 13000.832143 eV Total energy + Delta-G solvation = -2579.535386 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.02622 -38.14559 -36.05228 -35.13183 -32.94938 -32.57164 -29.96965 -29.11042 -25.63753 -25.30393 -24.09614 -22.61453 -21.55402 -19.34234 -18.50693 -17.96418 -17.15345 -16.76602 -16.52064 -15.62067 -15.35283 -14.99684 -14.57089 -14.44708 -14.14772 -13.76698 -13.43248 -13.00231 -12.98100 -12.74232 -12.66885 -12.59230 -12.37484 -11.87638 -11.83329 -11.65221 -11.36689 -11.32243 -10.81201 -10.58321 -9.88786 -9.84486 -8.18696 -6.27279 0.76546 1.24071 1.40051 1.41582 1.54755 1.68712 1.77952 2.44875 3.14014 3.57353 3.75051 3.81715 3.95779 4.17770 4.27374 4.30078 4.33738 4.47514 4.49191 4.56402 4.73114 4.76971 4.95367 5.06418 5.11694 5.22989 5.31320 5.34335 5.45738 5.55130 5.74046 5.77336 5.86730 5.94768 6.23155 6.81270 7.39428 7.73102 8.92510 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.056061 B = 0.003965 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.335338 B = 7060.984994 C = 7263.012036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.146 4.146 4 C -0.162 4.162 5 C -0.107 4.107 6 C 0.116 3.884 7 N -0.285 5.285 8 C -0.053 4.053 9 C -0.010 4.010 10 C 0.102 3.898 11 C -0.523 4.523 12 H 0.044 0.956 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.963 3.037 16 H -0.274 1.274 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.311 5.311 20 N -0.120 5.120 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.224 0.776 33 H 0.007 0.993 34 H 0.035 0.965 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.265 12.795 -13.766 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.163 4.163 4 C -0.180 4.180 5 C -0.145 4.145 6 C -0.003 4.003 7 N -0.080 5.080 8 C -0.203 4.203 9 C -0.148 4.148 10 C 0.063 3.937 11 C -0.562 4.562 12 H 0.062 0.938 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.788 3.212 16 H -0.199 1.199 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.178 5.178 20 N -0.099 5.099 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.147 0.853 27 H 0.150 0.850 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.241 0.759 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.049 13.205 -12.616 23.664 hybrid contribution 1.232 -0.485 -0.005 1.324 sum -13.817 12.720 -12.620 22.627 Atomic orbital electron populations 1.21684 0.94498 1.01956 1.02160 1.20905 0.96794 0.95113 1.02550 1.23024 0.97573 0.97524 0.98228 1.22589 0.99618 0.99330 0.96469 1.21027 0.92437 1.00385 1.00675 1.22433 0.94212 0.91026 0.92642 1.47646 1.27142 1.24856 1.08395 1.23780 0.98584 0.95115 1.02812 1.22686 1.00069 1.01910 0.90166 1.17389 0.90174 0.88849 0.97258 1.21314 1.13535 1.03619 1.17725 0.93811 1.25799 0.99364 0.94737 0.99129 1.70041 1.34550 1.09493 1.42638 0.85435 0.78672 0.78134 0.79005 1.19899 1.20208 1.19528 1.74981 1.08300 1.06385 1.28101 1.78029 1.21983 1.16840 0.93002 0.91605 0.92473 0.93118 0.90598 0.91946 0.85280 0.84985 0.90547 0.91277 0.84655 0.87000 0.75927 0.97459 0.94719 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.89 71.98 0.71 -1.13 16 2 C -0.12 -1.64 6.04 29.85 0.18 -1.46 16 3 C -0.15 -1.81 9.51 25.65 0.24 -1.57 16 4 C -0.16 -2.12 9.51 25.65 0.24 -1.88 16 5 C -0.11 -1.96 5.43 29.85 0.16 -1.80 16 6 C 0.12 2.18 6.44 86.38 0.56 2.73 16 7 N -0.28 -9.07 3.44 -347.75 -1.20 -10.26 16 8 C -0.05 -1.85 11.49 83.49 0.96 -0.89 16 9 C -0.01 -0.47 6.44 41.60 0.27 -0.21 16 10 C 0.10 5.59 5.55 29.10 0.16 5.76 16 11 C -0.52 -31.42 9.09 25.60 0.23 -31.18 16 12 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 13 C 0.01 0.46 5.46 84.66 0.46 0.92 16 14 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 15 Si 0.96 46.06 29.54 68.60 2.03 48.08 16 16 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 N -0.31 -15.50 12.40 -48.60 -0.60 -16.10 16 20 N -0.12 -4.94 12.91 37.02 0.48 -4.46 16 21 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.07 5.28 -2.38 -0.01 1.06 16 26 H 0.13 1.18 8.06 -2.91 -0.02 1.16 16 27 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 28 H 0.08 1.54 5.30 -2.39 -0.01 1.53 16 29 H 0.07 1.54 8.12 -2.38 -0.02 1.52 16 30 H 0.14 1.66 8.07 -2.38 -0.02 1.64 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.22 5.69 8.06 -2.91 -0.02 5.67 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.03 1.86 8.12 -2.38 -0.02 1.84 16 35 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -73.74 301.71 6.23 -67.51 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 1.06 Total: 1.68 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 4.18 Total: -30.72 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -1.04 Total: -86.56 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.74 6.23 -67.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.631 kcal (2) G-P(sol) polarization free energy of solvation -73.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds