Wall clock time and date at job start Sun Mar 29 2020 21:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 112.85233 * 2 1 4 4 N 1.46496 * 109.47137 * 294.50754 * 3 2 1 5 5 C 1.35312 * 125.86825 * 123.60242 * 4 3 2 6 6 C 1.35356 * 106.17426 * 179.90544 * 5 4 3 7 7 C 1.50701 * 126.75052 * 180.12842 * 6 5 4 8 8 C 1.50699 * 109.46993 * 125.29330 * 7 6 5 9 9 H 1.07998 * 120.00347 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99744 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00310 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00176 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47123 * 90.00098 * 12 10 8 14 14 H 1.48497 * 109.47207 * 210.00275 * 12 10 8 15 15 H 1.48499 * 109.46998 * 330.00273 * 12 10 8 16 16 N 1.33772 * 106.49635 * 0.34694 * 6 5 4 17 17 N 1.28635 * 108.88663 * 359.78162 * 16 6 5 18 18 C 1.53783 * 113.61413 * 228.79981 * 2 1 3 19 19 C 1.53779 * 87.07982 * 220.02172 * 18 2 1 20 20 C 1.53777 * 87.17293 * 25.39501 * 19 18 2 21 21 H 1.09000 * 109.46976 * 186.18684 * 1 2 3 22 22 H 1.08993 * 109.47158 * 306.19165 * 1 2 3 23 23 H 1.09002 * 109.46307 * 66.18755 * 1 2 3 24 24 H 1.09006 * 109.46839 * 54.50336 * 3 2 1 25 25 H 1.08996 * 109.47474 * 174.50231 * 3 2 1 26 26 H 1.07996 * 126.91684 * 0.02562 * 5 4 3 27 27 H 1.09007 * 109.46862 * 245.28680 * 7 6 5 28 28 H 1.08991 * 109.46949 * 5.28813 * 7 6 5 29 29 H 0.96994 * 120.00415 * 179.97438 * 11 10 8 30 30 H 1.09006 * 113.61109 * 105.47477 * 18 2 1 31 31 H 1.08997 * 113.61508 * 334.57345 * 18 2 1 32 32 H 1.09001 * 113.61084 * 139.98059 * 19 18 2 33 33 H 1.08994 * 113.61579 * 270.79762 * 19 18 2 34 34 H 1.08994 * 113.61850 * 89.16236 * 20 19 18 35 35 H 1.09002 * 113.61047 * 220.05997 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 7 1.7859 2.0824 -1.2567 5 6 1.1366 3.2637 -1.3740 6 6 1.0381 3.5097 -2.7013 7 6 0.3970 4.7089 -3.3510 8 6 1.3855 5.3654 -4.2798 9 1 2.3788 4.9557 -4.3885 10 6 1.0219 6.4893 -4.9909 11 7 -0.1876 6.9887 -4.8582 12 14 2.2474 7.3037 -6.1417 13 1 2.1237 6.7098 -7.4971 14 1 1.9678 8.7604 -6.2122 15 1 3.6249 7.0882 -5.6307 16 7 1.6175 2.4767 -3.3231 17 7 2.0504 1.6483 -2.4393 18 6 2.1461 -0.9281 -1.0602 19 6 3.1923 -1.3136 -0.0012 20 6 2.1479 -0.9297 1.0602 21 1 -0.3633 -1.0217 0.1108 22 1 -0.3633 0.6068 0.8293 23 1 -0.3632 0.4149 -0.9402 24 1 1.7154 1.9764 0.8367 25 1 3.2079 1.3475 0.0985 26 1 0.7721 3.8861 -0.5702 27 1 -0.4780 4.3906 -3.9178 28 1 0.0933 5.4195 -2.5824 29 1 -0.4433 7.7796 -5.3581 30 1 2.5651 -0.3970 -1.9149 31 1 1.4945 -1.7523 -1.3506 32 1 3.4442 -2.3741 -0.0021 33 1 4.0717 -0.6697 -0.0015 34 1 1.4970 -1.7543 1.3507 35 1 2.5685 -0.3999 1.9150 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603232657.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:20 Heat of formation + Delta-G solvation = 106.376016 kcal Electronic energy + Delta-G solvation = -16417.041166 eV Core-core repulsion = 13838.774337 eV Total energy + Delta-G solvation = -2578.266829 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.52016 -39.59259 -34.16646 -33.01228 -31.02336 -30.12794 -27.76874 -26.95500 -25.71393 -23.39940 -22.75649 -21.26155 -20.28843 -18.42265 -16.71085 -16.15549 -15.90789 -15.48749 -14.53418 -14.50391 -14.10863 -13.61932 -13.33006 -12.99220 -12.52567 -12.37954 -12.08342 -11.86707 -11.62403 -11.41495 -11.11983 -10.72340 -10.70259 -10.60621 -10.26730 -10.16075 -10.02094 -9.65059 -9.36289 -9.21084 -8.40637 -8.07570 -5.96454 -3.96790 2.29375 2.83888 3.38773 3.43635 3.47364 3.56723 4.27093 4.36699 4.40099 4.53665 4.64178 4.82987 4.99313 5.17648 5.28694 5.36930 5.40884 5.50967 5.57734 5.61167 5.69822 5.75403 5.87529 5.99267 6.13445 6.16593 6.23782 6.31857 6.42012 7.18348 7.28347 7.56561 7.66055 8.01505 8.40703 9.06787 9.37891 9.65938 11.14731 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.056089 B = 0.005035 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.089595 B = 5559.227817 C = 5783.720512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 C 0.144 3.856 4 N -0.298 5.298 5 C -0.084 4.084 6 C 0.034 3.966 7 C 0.092 3.908 8 C -0.502 4.502 9 H 0.059 0.941 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.896 3.104 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.275 1.275 16 N -0.265 5.265 17 N -0.104 5.104 18 C -0.136 4.136 19 C -0.144 4.144 20 C -0.123 4.123 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.179 0.821 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.261 0.739 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -13.727 14.397 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 C 0.022 3.978 4 N -0.093 5.093 5 C -0.233 4.233 6 C -0.103 4.103 7 C 0.054 3.946 8 C -0.541 4.541 9 H 0.077 0.923 10 C -0.144 4.144 11 N -0.539 5.539 12 Si 0.724 3.276 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.200 1.200 16 N -0.132 5.132 17 N -0.083 5.083 18 C -0.174 4.174 19 C -0.182 4.182 20 C -0.161 4.161 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.196 0.804 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.552 -14.711 13.527 20.298 hybrid contribution 0.111 1.375 0.237 1.400 sum 3.663 -13.335 13.764 19.512 Atomic orbital electron populations 1.21701 0.93505 1.01877 1.02175 1.22087 0.96002 0.92944 0.99201 1.21689 1.01478 0.92356 0.82311 1.47067 1.39076 1.15737 1.07417 1.23352 1.07790 0.91766 1.00366 1.22986 0.99716 0.97782 0.89841 1.17713 0.95442 0.86222 0.95269 1.21051 0.98882 1.10248 1.23887 0.92314 1.24970 0.95380 0.97061 0.97002 1.69945 1.18406 1.23156 1.42379 0.86517 0.81500 0.78230 0.81326 1.20561 1.21313 1.19959 1.75079 1.12452 1.01969 1.23658 1.78054 1.21470 1.22424 0.86336 1.23137 0.97572 0.98688 0.97958 1.22860 0.97238 1.01362 0.96724 1.22974 0.98228 0.98698 0.96224 0.92180 0.92566 0.92338 0.88134 0.88942 0.80378 0.94394 0.94642 0.92952 0.88456 0.90260 0.91494 0.90248 0.89588 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.00 37.16 0.33 -1.11 16 2 C -0.10 -1.04 1.06 -153.60 -0.16 -1.21 16 3 C 0.14 1.62 5.78 -4.05 -0.02 1.60 16 4 N -0.30 -4.93 3.26 -61.27 -0.20 -5.13 16 5 C -0.08 -1.55 11.49 -17.04 -0.20 -1.74 16 6 C 0.03 0.79 6.44 -82.77 -0.53 0.26 16 7 C 0.09 2.44 5.55 -29.04 -0.16 2.28 16 8 C -0.50 -14.65 9.09 -34.44 -0.31 -14.97 16 9 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 12 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 16 N -0.26 -6.34 12.40 33.29 0.41 -5.93 16 17 N -0.10 -2.10 10.68 60.35 0.64 -1.45 16 18 C -0.14 -1.55 6.94 -25.92 -0.18 -1.73 16 19 C -0.14 -1.28 7.72 -25.92 -0.20 -1.48 16 20 C -0.12 -0.97 7.24 -25.83 -0.19 -1.15 16 21 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 24 H 0.10 0.88 8.07 -51.93 -0.42 0.46 16 25 H 0.09 0.94 7.32 -51.93 -0.38 0.56 16 26 H 0.18 2.63 8.06 -52.49 -0.42 2.21 16 27 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.10 1.40 5.95 -51.93 -0.31 1.09 16 31 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.70 7.62 -51.93 -0.40 0.30 16 34 H 0.09 0.61 8.04 -51.93 -0.42 0.20 16 35 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 292.29 15.07 4.40 4.40 Total: -1.00 -32.59 292.29 -6.00 -38.59 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -5.26 Total: -3.90 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -1.72 Total: -17.72 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 1.59 Total: -38.67 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.59 -6.00 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603232657.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.968 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds