Wall clock time and date at job start Sun Mar 29 2020 21:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 112.85233 * 2 1 4 4 N 1.46496 * 109.47137 * 294.50754 * 3 2 1 5 5 C 1.35312 * 125.86825 * 123.60242 * 4 3 2 6 6 C 1.35356 * 106.17426 * 179.90544 * 5 4 3 7 7 C 1.50701 * 126.75052 * 180.12842 * 6 5 4 8 8 C 1.50699 * 109.46993 * 125.29330 * 7 6 5 9 9 H 1.07998 * 120.00347 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99744 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00310 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00176 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47123 * 90.00098 * 12 10 8 14 14 H 1.48497 * 109.47207 * 210.00275 * 12 10 8 15 15 H 1.48499 * 109.46998 * 330.00273 * 12 10 8 16 16 N 1.33772 * 106.49635 * 0.34694 * 6 5 4 17 17 N 1.28635 * 108.88663 * 359.78162 * 16 6 5 18 18 C 1.53783 * 113.61413 * 228.79981 * 2 1 3 19 19 C 1.53779 * 87.07982 * 220.02172 * 18 2 1 20 20 C 1.53777 * 87.17293 * 25.39501 * 19 18 2 21 21 H 1.09000 * 109.46976 * 186.18684 * 1 2 3 22 22 H 1.08993 * 109.47158 * 306.19165 * 1 2 3 23 23 H 1.09002 * 109.46307 * 66.18755 * 1 2 3 24 24 H 1.09006 * 109.46839 * 54.50336 * 3 2 1 25 25 H 1.08996 * 109.47474 * 174.50231 * 3 2 1 26 26 H 1.07996 * 126.91684 * 0.02562 * 5 4 3 27 27 H 1.09007 * 109.46862 * 245.28680 * 7 6 5 28 28 H 1.08991 * 109.46949 * 5.28813 * 7 6 5 29 29 H 0.96994 * 120.00415 * 179.97438 * 11 10 8 30 30 H 1.09006 * 113.61109 * 105.47477 * 18 2 1 31 31 H 1.08997 * 113.61508 * 334.57345 * 18 2 1 32 32 H 1.09001 * 113.61084 * 139.98059 * 19 18 2 33 33 H 1.08994 * 113.61579 * 270.79762 * 19 18 2 34 34 H 1.08994 * 113.61850 * 89.16236 * 20 19 18 35 35 H 1.09002 * 113.61047 * 220.05997 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 7 1.7859 2.0824 -1.2567 5 6 1.1366 3.2637 -1.3740 6 6 1.0381 3.5097 -2.7013 7 6 0.3970 4.7089 -3.3510 8 6 1.3855 5.3654 -4.2798 9 1 2.3788 4.9557 -4.3885 10 6 1.0219 6.4893 -4.9909 11 7 -0.1876 6.9887 -4.8582 12 14 2.2474 7.3037 -6.1417 13 1 2.1237 6.7098 -7.4971 14 1 1.9678 8.7604 -6.2122 15 1 3.6249 7.0882 -5.6307 16 7 1.6175 2.4767 -3.3231 17 7 2.0504 1.6483 -2.4393 18 6 2.1461 -0.9281 -1.0602 19 6 3.1923 -1.3136 -0.0012 20 6 2.1479 -0.9297 1.0602 21 1 -0.3633 -1.0217 0.1108 22 1 -0.3633 0.6068 0.8293 23 1 -0.3632 0.4149 -0.9402 24 1 1.7154 1.9764 0.8367 25 1 3.2079 1.3475 0.0985 26 1 0.7721 3.8861 -0.5702 27 1 -0.4780 4.3906 -3.9178 28 1 0.0933 5.4195 -2.5824 29 1 -0.4433 7.7796 -5.3581 30 1 2.5651 -0.3970 -1.9149 31 1 1.4945 -1.7523 -1.3506 32 1 3.4442 -2.3741 -0.0021 33 1 4.0717 -0.6697 -0.0015 34 1 1.4970 -1.7543 1.3507 35 1 2.5685 -0.3999 1.9150 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603232657.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:19 Heat of formation + Delta-G solvation = 85.923366 kcal Electronic energy + Delta-G solvation = -16417.928059 eV Core-core repulsion = 13838.774337 eV Total energy + Delta-G solvation = -2579.153722 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.03700 -40.43003 -35.85210 -34.81304 -32.85732 -31.05551 -29.49951 -28.22822 -26.51478 -25.41631 -23.70428 -22.65308 -21.82875 -19.41941 -18.50072 -17.78374 -17.20344 -16.54623 -16.28050 -15.62522 -15.49967 -14.79712 -14.37797 -14.27163 -14.13563 -13.70583 -13.47865 -13.24483 -12.85266 -12.66716 -12.64910 -12.47124 -12.19394 -11.82145 -11.69639 -11.58338 -11.33744 -11.04419 -10.97700 -10.69798 -10.57169 -9.81279 -8.18531 -6.27253 0.82350 1.40037 1.42381 1.52740 1.62692 1.81261 2.44709 3.14168 3.41679 3.54470 3.58843 3.76569 3.92184 4.04894 4.18005 4.35731 4.41016 4.51444 4.60114 4.72245 4.82975 4.88072 4.90490 4.95884 5.12249 5.17452 5.25720 5.32308 5.40585 5.50925 5.52759 5.56736 5.77190 5.93847 6.23385 6.81067 7.39424 7.77959 8.92503 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.056089 B = 0.005035 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.089595 B = 5559.227817 C = 5783.720512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C 0.128 3.872 4 N -0.277 5.277 5 C -0.056 4.056 6 C -0.009 4.009 7 C 0.103 3.897 8 C -0.523 4.523 9 H 0.043 0.957 10 C 0.009 3.991 11 N -0.928 5.928 12 Si 0.962 3.038 13 H -0.276 1.276 14 H -0.273 1.273 15 H -0.271 1.271 16 N -0.315 5.315 17 N -0.108 5.108 18 C -0.151 4.151 19 C -0.139 4.139 20 C -0.103 4.103 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.019 0.981 24 H 0.139 0.861 25 H 0.110 0.890 26 H 0.221 0.779 27 H 0.005 0.995 28 H 0.033 0.967 29 H 0.266 0.734 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -14.149 16.941 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.104 4.104 3 C 0.009 3.991 4 N -0.072 5.072 5 C -0.206 4.206 6 C -0.147 4.147 7 C 0.064 3.936 8 C -0.562 4.562 9 H 0.062 0.938 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.787 3.213 13 H -0.202 1.202 14 H -0.198 1.198 15 H -0.196 1.196 16 N -0.182 5.182 17 N -0.087 5.087 18 C -0.189 4.189 19 C -0.176 4.176 20 C -0.140 4.140 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.039 0.961 24 H 0.157 0.843 25 H 0.128 0.872 26 H 0.237 0.763 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.587 -15.167 16.089 22.582 hybrid contribution -0.220 1.399 -0.470 1.492 sum 4.367 -13.768 15.619 21.274 Atomic orbital electron populations 1.21697 0.93859 1.02734 1.00759 1.22133 0.95651 0.92564 1.00076 1.22347 1.03054 0.93087 0.80657 1.47484 1.36669 1.14946 1.08129 1.23720 1.05600 0.91917 0.99400 1.22622 1.02425 0.97675 0.92014 1.17364 0.94071 0.87532 0.94616 1.21278 0.98820 1.10936 1.25127 0.93819 1.25793 0.97260 0.97505 0.98400 1.70039 1.19931 1.23626 1.43184 0.85493 0.79090 0.77718 0.78988 1.20191 1.19804 1.19596 1.74990 1.14253 1.03046 1.25885 1.77989 1.21563 1.21771 0.87327 1.23177 0.99001 0.98987 0.97748 1.22849 0.96926 1.02076 0.95776 1.22904 0.97212 0.98117 0.95790 0.91013 0.90771 0.96146 0.84319 0.87235 0.76253 0.97662 0.94890 0.92490 0.91897 0.90520 0.90526 0.90105 0.88353 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.00 71.98 0.65 -1.92 16 2 C -0.10 -1.85 1.06 -51.59 -0.05 -1.90 16 3 C 0.13 2.44 5.78 86.38 0.50 2.94 16 4 N -0.28 -8.79 3.26 -347.74 -1.14 -9.92 16 5 C -0.06 -1.99 11.49 83.49 0.96 -1.03 16 6 C -0.01 -0.44 6.44 41.60 0.27 -0.17 16 7 C 0.10 5.68 5.55 29.10 0.16 5.84 16 8 C -0.52 -31.50 9.09 25.60 0.23 -31.27 16 9 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 10 C 0.01 0.50 5.46 84.65 0.46 0.96 16 11 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 12 Si 0.96 46.19 29.54 68.60 2.03 48.22 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 15 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 16 N -0.32 -15.67 12.40 -48.60 -0.60 -16.28 16 17 N -0.11 -4.39 10.68 37.02 0.40 -3.99 16 18 C -0.15 -3.30 6.94 31.12 0.22 -3.09 16 19 C -0.14 -2.08 7.72 31.12 0.24 -1.84 16 20 C -0.10 -1.17 7.24 31.18 0.23 -0.95 16 21 H 0.07 1.19 8.06 -2.39 -0.02 1.17 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.02 0.53 8.13 -2.39 -0.02 0.51 16 24 H 0.14 1.67 8.07 -2.38 -0.02 1.65 16 25 H 0.11 1.82 7.32 -2.39 -0.02 1.80 16 26 H 0.22 5.73 8.06 -2.91 -0.02 5.71 16 27 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 28 H 0.03 1.78 8.12 -2.39 -0.02 1.76 16 29 H 0.27 15.11 8.31 -92.71 -0.77 14.33 16 30 H 0.06 1.83 5.95 -2.38 -0.01 1.81 16 31 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.20 7.62 -2.39 -0.02 1.18 16 34 H 0.10 0.95 8.04 -2.39 -0.02 0.94 16 35 H 0.09 0.70 8.10 -2.39 -0.02 0.68 16 Total: -1.00 -74.13 292.29 5.89 -68.25 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 1.06 Total: 2.19 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.86 Total: -32.42 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -1.06 Total: -86.23 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -74.13 5.89 -68.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603232657.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.169 kcal (2) G-P(sol) polarization free energy of solvation -74.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds