Wall clock time and date at job start Sun Mar 29 2020 21:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48506 * 109.47381 * 239.99984 * 3 2 1 5 5 H 1.48506 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47428 * 120.00039 * 3 2 1 7 7 C 1.37875 * 120.00511 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00661 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47409 * 180.02562 * 9 7 2 11 11 C 1.35348 * 126.75026 * 124.99927 * 10 9 7 12 12 N 1.35317 * 106.17735 * 179.78015 * 11 10 9 13 13 C 1.46497 * 125.87017 * 180.21003 * 12 11 10 14 14 C 1.52997 * 109.47042 * 125.00329 * 13 12 11 15 15 C 1.53003 * 109.46935 * 179.97438 * 14 13 12 16 16 C 1.53778 * 113.61583 * 274.13194 * 15 14 13 17 17 C 1.53952 * 87.02250 * 220.04610 * 16 15 14 18 18 C 1.53780 * 113.61485 * 176.52310 * 15 14 13 19 19 N 1.28721 * 108.26102 * 0.22816 * 12 11 10 20 20 N 1.28636 * 110.17709 * 0.02562 * 19 12 11 21 21 H 0.96998 * 120.00536 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46591 * 60.00808 * 9 7 2 23 23 H 1.08993 * 109.47564 * 300.00723 * 9 7 2 24 24 H 1.08002 * 126.91502 * 0.05047 * 11 10 9 25 25 H 1.09005 * 109.46746 * 244.99906 * 13 12 11 26 26 H 1.08999 * 109.47160 * 4.99611 * 13 12 11 27 27 H 1.09005 * 109.47005 * 299.99419 * 14 13 12 28 28 H 1.08999 * 109.47730 * 59.99630 * 14 13 12 29 29 H 1.09003 * 112.85034 * 45.33246 * 15 14 13 30 30 H 1.08998 * 113.61119 * 334.57066 * 16 15 14 31 31 H 1.09003 * 113.61308 * 105.46791 * 16 15 14 32 32 H 1.08994 * 113.54151 * 270.81320 * 17 16 15 33 33 H 1.08999 * 113.66428 * 139.93092 * 17 16 15 34 34 H 1.08998 * 113.61540 * 254.53071 * 18 15 14 35 35 H 1.09004 * 113.61316 * 25.35386 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.2838 -4.6643 0.8878 12 7 3.3113 -5.4526 0.4955 13 6 3.7477 -6.6857 1.1552 14 6 3.7582 -7.8307 0.1406 15 6 4.2146 -9.1184 0.8295 16 6 5.7426 -9.2870 0.8704 17 6 5.5058 -10.7773 0.5655 18 6 4.1792 -10.3530 -0.0866 19 7 3.8396 -4.9327 -0.5569 20 7 3.2201 -3.8515 -0.8764 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8905 23 1 0.6247 -2.5571 0.8895 24 1 1.6341 -4.8201 1.7364 25 1 4.7514 -6.5470 1.5571 26 1 3.0612 -6.9259 1.9671 27 1 2.7545 -7.9694 -0.2613 28 1 4.4447 -7.5906 -0.6714 29 1 3.7319 -9.2764 1.7940 30 1 6.2619 -8.7553 0.0731 31 1 6.1758 -9.1050 1.8539 32 1 5.3774 -11.3892 1.4582 33 1 6.2231 -11.1992 -0.1385 34 1 3.3522 -11.0306 0.1255 35 1 4.2690 -10.1133 -1.1461 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603235086.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:06 Heat of formation + Delta-G solvation = 97.986859 kcal Electronic energy + Delta-G solvation = -15748.477199 eV Core-core repulsion = 13169.846589 eV Total energy + Delta-G solvation = -2578.630610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.45426 -39.25000 -35.02764 -33.23315 -31.07477 -30.79659 -27.42642 -26.09940 -25.68026 -23.40894 -22.52941 -21.08126 -19.85948 -19.69818 -16.81125 -16.32731 -16.04455 -15.44510 -14.90274 -14.54072 -14.40657 -13.90880 -13.22505 -12.82134 -12.72869 -12.38131 -12.10818 -11.88587 -11.56393 -11.40227 -10.98659 -10.88257 -10.69095 -10.62895 -10.55241 -10.41923 -10.03194 -9.65939 -9.39121 -9.23148 -8.40327 -8.08685 -5.96303 -3.96799 2.28612 2.86278 3.40543 3.43067 3.46014 3.55863 4.21119 4.30177 4.41526 4.53624 4.54195 4.62641 4.96095 5.05856 5.15799 5.20866 5.35682 5.41004 5.45102 5.47942 5.57609 5.61600 5.69931 5.87512 5.95179 5.98881 6.13040 6.21793 6.39120 7.17612 7.25179 7.56139 7.65839 8.01496 8.40639 9.06481 9.36359 9.65839 11.14855 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.073828 B = 0.003934 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.168467 B = 7116.620102 C = 7267.395956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.092 3.908 10 C 0.033 3.967 11 C -0.084 4.084 12 N -0.304 5.304 13 C 0.123 3.877 14 C -0.122 4.122 15 C -0.109 4.109 16 C -0.140 4.140 17 C -0.143 4.143 18 C -0.136 4.136 19 N -0.109 5.109 20 N -0.263 5.263 21 H 0.262 0.738 22 H 0.039 0.961 23 H 0.036 0.964 24 H 0.180 0.820 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.122 -20.592 4.771 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.104 4.104 11 C -0.233 4.233 12 N -0.100 5.100 13 C 0.001 3.999 14 C -0.160 4.160 15 C -0.128 4.128 16 C -0.177 4.177 17 C -0.181 4.181 18 C -0.173 4.173 19 N -0.088 5.088 20 N -0.131 5.131 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.198 0.802 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.080 -20.618 3.714 22.454 hybrid contribution -0.391 0.898 1.030 1.421 sum 7.688 -19.720 4.744 21.691 Atomic orbital electron populations 1.69932 1.05971 1.26853 1.51133 1.24969 0.94876 0.99208 0.95358 0.86574 0.79488 0.82748 0.78729 1.20082 1.21326 1.20349 1.21021 0.93234 0.89815 1.50161 0.92341 1.17714 0.90887 0.87576 0.98444 1.23021 0.97768 0.97771 0.91857 1.23376 0.97700 0.96262 1.05932 1.47220 1.22694 1.19394 1.20655 1.21918 1.02042 0.80578 0.95375 1.21871 1.03269 0.92537 0.98329 1.22509 0.96727 0.94024 0.99512 1.23058 0.95840 0.96584 1.02225 1.22835 0.97818 0.96639 1.00799 1.22925 0.97854 0.97042 0.99515 1.78148 1.21757 1.07008 1.01892 1.75070 1.06978 1.07145 1.23860 0.92877 0.94345 0.94601 0.80250 0.89128 0.88411 0.91000 0.89929 0.88961 0.89736 0.91448 0.90305 0.91487 0.91490 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.50 -14.79 9.09 -34.44 -0.31 -15.10 16 8 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 9 C 0.09 2.47 5.55 -29.04 -0.16 2.30 16 10 C 0.03 0.78 6.44 -82.78 -0.53 0.25 16 11 C -0.08 -1.57 11.49 -17.05 -0.20 -1.76 16 12 N -0.30 -5.16 3.44 -61.26 -0.21 -5.37 16 13 C 0.12 1.35 6.45 -4.05 -0.03 1.32 16 14 C -0.12 -1.20 5.16 -26.73 -0.14 -1.34 16 15 C -0.11 -0.81 3.64 -89.81 -0.33 -1.13 16 16 C -0.14 -1.01 7.65 -25.83 -0.20 -1.21 16 17 C -0.14 -0.94 8.09 -25.83 -0.21 -1.15 16 18 C -0.14 -0.98 7.65 -25.92 -0.20 -1.17 16 19 N -0.11 -2.28 12.91 60.35 0.78 -1.50 16 20 N -0.26 -6.45 12.40 33.29 0.41 -6.04 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.04 1.09 8.14 -51.92 -0.42 0.67 16 23 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 24 H 0.18 2.66 8.06 -52.49 -0.42 2.23 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.10 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.94 7.85 -51.93 -0.41 0.54 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 298.85 15.07 4.50 4.50 Total: -1.00 -33.26 298.85 -6.62 -39.88 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -5.43 Total: -5.13 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.40 Total: -17.45 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 1.72 Total: -39.14 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.26 -6.62 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603235086.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.864 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds