Wall clock time and date at job start Sun Mar 29 2020 21:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48506 * 109.47381 * 239.99984 * 3 2 1 5 5 H 1.48506 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47428 * 120.00039 * 3 2 1 7 7 C 1.37875 * 120.00511 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00661 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47409 * 180.02562 * 9 7 2 11 11 C 1.35348 * 126.75026 * 124.99927 * 10 9 7 12 12 N 1.35317 * 106.17735 * 179.78015 * 11 10 9 13 13 C 1.46497 * 125.87017 * 180.21003 * 12 11 10 14 14 C 1.52997 * 109.47042 * 125.00329 * 13 12 11 15 15 C 1.53003 * 109.46935 * 179.97438 * 14 13 12 16 16 C 1.53778 * 113.61583 * 274.13194 * 15 14 13 17 17 C 1.53952 * 87.02250 * 220.04610 * 16 15 14 18 18 C 1.53780 * 113.61485 * 176.52310 * 15 14 13 19 19 N 1.28721 * 108.26102 * 0.22816 * 12 11 10 20 20 N 1.28636 * 110.17709 * 0.02562 * 19 12 11 21 21 H 0.96998 * 120.00536 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46591 * 60.00808 * 9 7 2 23 23 H 1.08993 * 109.47564 * 300.00723 * 9 7 2 24 24 H 1.08002 * 126.91502 * 0.05047 * 11 10 9 25 25 H 1.09005 * 109.46746 * 244.99906 * 13 12 11 26 26 H 1.08999 * 109.47160 * 4.99611 * 13 12 11 27 27 H 1.09005 * 109.47005 * 299.99419 * 14 13 12 28 28 H 1.08999 * 109.47730 * 59.99630 * 14 13 12 29 29 H 1.09003 * 112.85034 * 45.33246 * 15 14 13 30 30 H 1.08998 * 113.61119 * 334.57066 * 16 15 14 31 31 H 1.09003 * 113.61308 * 105.46791 * 16 15 14 32 32 H 1.08994 * 113.54151 * 270.81320 * 17 16 15 33 33 H 1.08999 * 113.66428 * 139.93092 * 17 16 15 34 34 H 1.08998 * 113.61540 * 254.53071 * 18 15 14 35 35 H 1.09004 * 113.61316 * 25.35386 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.2838 -4.6643 0.8878 12 7 3.3113 -5.4526 0.4955 13 6 3.7477 -6.6857 1.1552 14 6 3.7582 -7.8307 0.1406 15 6 4.2146 -9.1184 0.8295 16 6 5.7426 -9.2870 0.8704 17 6 5.5058 -10.7773 0.5655 18 6 4.1792 -10.3530 -0.0866 19 7 3.8396 -4.9327 -0.5569 20 7 3.2201 -3.8515 -0.8764 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8905 23 1 0.6247 -2.5571 0.8895 24 1 1.6341 -4.8201 1.7364 25 1 4.7514 -6.5470 1.5571 26 1 3.0612 -6.9259 1.9671 27 1 2.7545 -7.9694 -0.2613 28 1 4.4447 -7.5906 -0.6714 29 1 3.7319 -9.2764 1.7940 30 1 6.2619 -8.7553 0.0731 31 1 6.1758 -9.1050 1.8539 32 1 5.3774 -11.3892 1.4582 33 1 6.2231 -11.1992 -0.1385 34 1 3.3522 -11.0306 0.1255 35 1 4.2690 -10.1133 -1.1461 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603235086.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:05 Heat of formation + Delta-G solvation = 77.431838 kcal Electronic energy + Delta-G solvation = -15749.368531 eV Core-core repulsion = 13169.846589 eV Total energy + Delta-G solvation = -2579.521943 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.01854 -39.85840 -36.37064 -35.22582 -32.90354 -31.97925 -29.34221 -26.94236 -26.37481 -25.45389 -23.45742 -22.56574 -21.35876 -20.28747 -18.52782 -17.94178 -17.31379 -16.55162 -16.34815 -15.71051 -15.56765 -15.12633 -14.52023 -14.29250 -14.07051 -13.60402 -13.30309 -13.17134 -12.85308 -12.67587 -12.57382 -12.40997 -12.19837 -11.82513 -11.66608 -11.46402 -11.37162 -11.19178 -11.02502 -10.71319 -10.57754 -9.84467 -8.18507 -6.27423 0.78912 1.40346 1.44089 1.51774 1.63476 1.78024 2.44859 3.14100 3.50135 3.59235 3.72324 3.80201 3.95411 3.99852 4.20864 4.26584 4.33561 4.48659 4.52238 4.59662 4.84949 4.89467 4.92075 4.93746 5.10902 5.14584 5.18612 5.31641 5.39909 5.46089 5.55118 5.65701 5.76928 5.88622 6.23085 6.80685 7.39193 7.73690 8.92314 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.073828 B = 0.003934 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.168467 B = 7116.620102 C = 7267.395956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.044 0.956 9 C 0.103 3.897 10 C -0.011 4.011 11 C -0.053 4.053 12 N -0.284 5.284 13 C 0.110 3.890 14 C -0.115 4.115 15 C -0.101 4.101 16 C -0.143 4.143 17 C -0.139 4.139 18 C -0.141 4.141 19 N -0.120 5.120 20 N -0.313 5.313 21 H 0.267 0.733 22 H 0.007 0.993 23 H 0.034 0.966 24 H 0.225 0.775 25 H 0.107 0.893 26 H 0.138 0.862 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.719 -21.824 6.732 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.062 0.938 9 C 0.064 3.936 10 C -0.149 4.149 11 C -0.204 4.204 12 N -0.080 5.080 13 C -0.009 4.009 14 C -0.153 4.153 15 C -0.119 4.119 16 C -0.180 4.180 17 C -0.177 4.177 18 C -0.178 4.178 19 N -0.099 5.099 20 N -0.179 5.179 21 H 0.075 0.925 22 H 0.025 0.975 23 H 0.053 0.947 24 H 0.241 0.759 25 H 0.125 0.875 26 H 0.156 0.844 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.704 -21.888 5.673 24.228 hybrid contribution -0.560 1.133 0.448 1.341 sum 8.144 -20.754 6.120 23.120 Atomic orbital electron populations 1.70027 1.07272 1.28017 1.51415 1.25797 0.95809 1.02699 0.94678 0.85551 0.78391 0.78528 0.78858 1.20140 1.19992 1.19286 1.21268 0.92787 0.91625 1.50773 0.93775 1.17374 0.91102 0.88365 0.96746 1.22690 0.98596 0.99167 0.94458 1.23793 0.97277 0.94147 1.05159 1.47684 1.21147 1.20028 1.19130 1.22560 1.04037 0.78146 0.96176 1.21801 1.02317 0.93450 0.97762 1.22521 0.96867 0.92420 1.00120 1.23064 0.95631 0.96978 1.02360 1.22843 0.97264 0.96372 1.01205 1.22948 0.98642 0.97227 0.98987 1.78027 1.21968 1.06449 1.03476 1.74978 1.08206 1.09091 1.25630 0.92451 0.97529 0.94737 0.75864 0.87467 0.84378 0.91832 0.92089 0.86842 0.91003 0.90433 0.89022 0.91558 0.90699 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 2 C 0.01 0.49 5.46 84.66 0.46 0.96 16 3 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -31.66 9.09 25.60 0.23 -31.42 16 8 H 0.04 2.72 7.74 -2.91 -0.02 2.69 16 9 C 0.10 5.66 5.55 29.10 0.16 5.82 16 10 C -0.01 -0.51 6.44 41.59 0.27 -0.24 16 11 C -0.05 -1.89 11.49 83.49 0.96 -0.93 16 12 N -0.28 -9.08 3.44 -347.74 -1.20 -10.28 16 13 C 0.11 2.03 6.45 86.38 0.56 2.59 16 14 C -0.11 -2.04 5.16 30.59 0.16 -1.88 16 15 C -0.10 -1.21 3.64 -10.27 -0.04 -1.25 16 16 C -0.14 -1.74 7.65 31.18 0.24 -1.51 16 17 C -0.14 -1.52 8.09 31.18 0.25 -1.27 16 18 C -0.14 -1.75 7.65 31.12 0.24 -1.51 16 19 N -0.12 -5.00 12.91 37.02 0.48 -4.52 16 20 N -0.31 -15.66 12.40 -48.60 -0.60 -16.26 16 21 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 22 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 23 H 0.03 1.85 8.12 -2.39 -0.02 1.83 16 24 H 0.22 5.69 8.06 -2.91 -0.02 5.67 16 25 H 0.11 1.74 8.14 -2.38 -0.02 1.73 16 26 H 0.14 1.54 8.07 -2.39 -0.02 1.52 16 27 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.06 1.36 7.85 -2.39 -0.02 1.34 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.06 7.92 -2.39 -0.02 1.04 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.04 8.10 -2.38 -0.02 1.03 16 Total: -1.00 -74.14 298.85 5.53 -68.61 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: 1.05 Total: 0.93 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.49 Total: -30.64 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -1.04 Total: -86.98 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.14 5.53 -68.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603235086.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.039 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds