Wall clock time and date at job start Sun Mar 29 2020 21:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35654 * 120.70018 * 2 1 4 4 N 1.33773 * 120.41467 * 180.02562 * 3 2 1 5 5 C 1.30411 * 122.02535 * 359.70306 * 4 3 2 6 6 N 1.35658 * 121.41950 * 0.59281 * 5 4 3 7 7 H 0.97004 * 120.31281 * 179.69837 * 6 5 4 8 8 C 1.38031 * 119.37187 * 359.42378 * 6 5 4 9 9 N 1.31481 * 120.91582 * 180.25688 * 8 6 5 10 10 C 1.46503 * 119.99812 * 354.11239 * 9 8 6 11 11 C 1.52994 * 109.47050 * 114.84090 * 10 9 8 12 12 C 1.53000 * 109.47354 * 299.99932 * 11 10 9 13 13 C 1.52999 * 109.46968 * 60.00177 * 11 10 9 14 14 C 1.50698 * 109.47089 * 179.97438 * 11 10 9 15 15 H 1.07999 * 120.00134 * 354.80860 * 14 11 10 16 16 C 1.37881 * 120.00077 * 174.80374 * 14 11 10 17 17 N 1.31518 * 120.00510 * 199.08531 * 16 14 11 18 18 Si 1.86797 * 119.99716 * 19.08778 * 16 14 11 19 19 H 1.48506 * 109.47226 * 84.97873 * 18 16 14 20 20 H 1.48503 * 109.47242 * 204.97562 * 18 16 14 21 21 H 1.48502 * 109.47489 * 324.97569 * 18 16 14 22 22 H 1.08998 * 109.47172 * 269.97964 * 1 2 3 23 23 H 1.09000 * 109.46794 * 29.98181 * 1 2 3 24 24 H 1.09001 * 109.46639 * 149.98045 * 1 2 3 25 25 H 1.08005 * 119.78963 * 0.04055 * 3 2 1 26 26 H 1.08009 * 119.28976 * 180.29362 * 5 4 3 27 27 H 1.08998 * 109.47068 * 234.84387 * 10 9 8 28 28 H 1.08998 * 109.47080 * 354.84042 * 10 9 8 29 29 H 1.08999 * 109.47205 * 67.72324 * 12 11 10 30 30 H 1.09005 * 109.47008 * 187.72433 * 12 11 10 31 31 H 1.08997 * 109.47045 * 307.72778 * 12 11 10 32 32 H 1.08997 * 109.47720 * 60.00190 * 13 11 10 33 33 H 1.09004 * 109.47012 * 180.02562 * 13 11 10 34 34 H 1.09003 * 109.47407 * 299.99516 * 13 11 10 35 35 H 0.96992 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1664 0.0000 4 7 3.5373 1.1598 -0.0005 5 6 4.2233 0.0507 0.0047 6 7 3.6109 -1.1597 -0.0010 7 1 4.1371 -1.9747 -0.0014 8 6 2.2319 -1.2208 -0.0005 9 7 1.6069 -2.3775 -0.0009 10 6 2.3691 -3.6218 -0.1321 11 6 2.2384 -4.4380 1.1554 12 6 2.7854 -3.6264 2.3315 13 6 0.7648 -4.7663 1.4037 14 6 3.0219 -5.7182 1.0203 15 1 3.4897 -5.9682 0.0796 16 6 3.1415 -6.5702 2.0977 17 7 4.1000 -7.4704 2.1211 18 14 1.9419 -6.4460 3.5242 19 1 0.7227 -7.2358 3.2160 20 1 2.5793 -6.9797 4.7548 21 1 1.5702 -5.0240 3.7362 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3632 -0.8898 -0.5142 25 1 1.6676 2.1064 0.0007 26 1 5.3024 0.0969 0.0089 27 1 1.9794 -4.2000 -0.9699 28 1 3.4189 -3.3879 -0.3090 29 1 2.1360 -2.7706 2.5156 30 1 2.8198 -4.2546 3.2216 31 1 3.7900 -3.2759 2.0950 32 1 0.3751 -5.3445 0.5660 33 1 0.6717 -5.3473 2.3213 34 1 0.1977 -3.8405 1.5014 35 1 4.1843 -8.0695 2.8792 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603392088.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:13 Heat of formation + Delta-G solvation = 52.539589 kcal Electronic energy + Delta-G solvation = -16920.571230 eV Core-core repulsion = 14339.969878 eV Total energy + Delta-G solvation = -2580.601351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82619 -38.65431 -36.08586 -35.22008 -33.92621 -31.92294 -28.23828 -27.98327 -27.57469 -26.93145 -24.17828 -23.08843 -20.66784 -19.28059 -18.45308 -18.08972 -17.37460 -17.05203 -16.02585 -15.41752 -15.06119 -14.95157 -14.81361 -14.54927 -13.98841 -13.78767 -13.73288 -13.39604 -13.03640 -12.87758 -12.59103 -12.40149 -12.07974 -11.97917 -11.76094 -11.14777 -10.99129 -10.80311 -10.58392 -10.41556 -10.10111 -8.37343 -8.31395 -6.31602 -0.02515 1.05862 1.29138 1.34603 1.42225 1.99647 2.30122 2.77649 2.99561 3.41436 3.53379 4.07310 4.16437 4.27038 4.27791 4.46411 4.54893 4.67272 4.73098 4.81526 4.95086 4.97277 5.02655 5.08370 5.13114 5.18846 5.22676 5.44586 5.58060 5.62664 5.70296 5.76444 6.12811 6.32306 6.71019 7.06508 7.21369 7.33417 8.79925 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.037627 B = 0.007170 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.977671 B = 3904.152643 C = 4214.465394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.191 4.191 3 C 0.118 3.882 4 N -0.576 5.576 5 C 0.377 3.623 6 N -0.660 5.660 7 H 0.421 0.579 8 C 0.377 3.623 9 N -0.597 5.597 10 C 0.088 3.912 11 C 0.042 3.958 12 C -0.127 4.127 13 C -0.128 4.128 14 C -0.518 4.518 15 H 0.036 0.964 16 C 0.029 3.971 17 N -0.936 5.936 18 Si 0.925 3.075 19 H -0.285 1.285 20 H -0.307 1.307 21 H -0.219 1.219 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.056 0.944 25 H 0.183 0.817 26 H 0.241 0.759 27 H 0.055 0.945 28 H 0.026 0.974 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.024 0.976 34 H 0.055 0.945 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 18.114 -2.911 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.199 4.199 3 C -0.019 4.019 4 N -0.298 5.298 5 C 0.092 3.908 6 N -0.289 5.289 7 H 0.262 0.738 8 C 0.109 3.891 9 N -0.325 5.325 10 C -0.043 4.043 11 C 0.040 3.960 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.556 4.556 15 H 0.054 0.946 16 C -0.169 4.169 17 N -0.575 5.575 18 Si 0.755 3.245 19 H -0.213 1.213 20 H -0.236 1.236 21 H -0.144 1.144 22 H 0.082 0.918 23 H 0.106 0.894 24 H 0.075 0.925 25 H 0.200 0.800 26 H 0.256 0.744 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.023 18.357 -2.796 18.813 hybrid contribution 0.435 -2.084 0.551 2.199 sum -2.588 16.273 -2.245 16.630 Atomic orbital electron populations 1.20337 0.88376 1.02939 1.02128 1.20413 0.98668 0.89609 1.11226 1.22472 0.89306 0.98128 0.91965 1.68242 1.09144 1.26746 1.25681 1.25795 1.01200 0.78884 0.84966 1.44607 1.08133 1.11433 1.64687 0.73841 1.20564 0.80239 0.95231 0.93042 1.73236 1.33347 0.96505 1.29415 1.21619 0.94295 0.90626 0.97722 1.18450 0.92590 0.92642 0.92277 1.22115 0.98959 0.98443 0.98952 1.22035 0.98060 0.99639 0.98794 1.21117 1.32007 1.04868 0.97579 0.94565 1.25634 0.95740 0.95105 1.00458 1.70119 1.31304 1.23258 1.32784 0.86677 0.79235 0.80157 0.78435 1.21284 1.23580 1.14370 0.91794 0.89397 0.92474 0.79958 0.74362 0.92665 0.95552 0.94442 0.94079 0.94137 0.94145 0.95738 0.92597 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.84 71.24 0.70 -1.08 16 2 C -0.19 -4.86 5.93 -19.54 -0.12 -4.98 16 3 C 0.12 2.49 10.83 83.80 0.91 3.40 16 4 N -0.58 -12.18 10.36 -199.42 -2.07 -14.25 16 5 C 0.38 6.89 12.40 180.09 2.23 9.13 16 6 N -0.66 -16.19 5.28 -195.28 -1.03 -17.22 16 7 H 0.42 10.39 6.40 -92.71 -0.59 9.79 16 8 C 0.38 11.45 7.49 134.38 1.01 12.46 16 9 N -0.60 -21.76 8.36 -343.96 -2.87 -24.64 16 10 C 0.09 3.57 5.12 86.38 0.44 4.02 16 11 C 0.04 1.93 0.57 -52.93 -0.03 1.90 16 12 C -0.13 -5.51 7.53 71.98 0.54 -4.96 16 13 C -0.13 -5.78 7.68 71.98 0.55 -5.22 16 14 C -0.52 -28.96 8.61 25.60 0.22 -28.74 16 15 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 16 C 0.03 1.68 5.25 84.65 0.44 2.13 16 17 N -0.94 -57.81 13.96 21.45 0.30 -57.51 16 18 Si 0.93 45.29 22.94 68.60 1.57 46.87 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 20 H -0.31 -15.06 7.11 99.48 0.71 -14.36 16 21 H -0.22 -9.84 4.56 99.48 0.45 -9.39 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 24 H 0.06 1.52 7.62 -2.39 -0.02 1.50 16 25 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 26 H 0.24 1.93 8.06 -2.91 -0.02 1.91 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 28 H 0.03 1.00 5.58 -2.39 -0.01 0.99 16 29 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 30 H 0.04 1.86 3.83 -2.38 -0.01 1.86 16 31 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.02 1.12 2.74 -2.38 -0.01 1.11 16 34 H 0.06 2.33 7.60 -2.39 -0.02 2.32 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -69.67 275.60 3.06 -66.62 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.25 Total: 12.09 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 6.90 Total: -11.96 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -5.67 Total: -113.62 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.57 Total: 46.87 kcal Total: -69.67 3.06 -66.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603392088.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.156 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds